AlfalfaGEDB | MsaG043228

M. sativa ssp. caerulea / MsaG043228

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564
PFAM: PF12819.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043228	XP_013445689.1	92.904	761	51	1	1	761	1	758	0.0	1461

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043228	sp\|Q9LK35\|THE1_ARATH	48.363	794	338	14	10	735	4	793	0.0	678

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043228	tr\|A0A072U1N9\|A0A072U1N9_MEDTR	92.904	761	51	1	1	761	1	758	0.0	1461

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000286	MsaG043228	0.803433	5.883757e-49	8.601878e-47
MsaG000472	MsaG043228	0.815726	1.382221e-51	2.721527e-49
MsaG000715	MsaG043228	0.816287	1.037415e-51	2.071978e-49
MsaG001147	MsaG043228	0.819443	2.025759e-52	4.390323e-50
MsaG002781	MsaG043228	0.836286	1.869567e-56	6.508966e-54
MsaG003274	MsaG043228	0.814835	2.175621e-51	4.188209e-49
MsaG003293	MsaG043228	0.814082	3.187757e-51	6.021475e-49
MsaG004005	MsaG043228	0.811693	1.057696e-50	1.882549e-48
MsaG004571	MsaG043228	0.834484	5.309384e-56	1.751224e-53
MsaG005052	MsaG043228	0.822384	4.296330e-53	1.006677e-50

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043228	MtrunA17_Chr8g0361611	92.904	761	51	1	1	761	1	758	0.0	1461
MsaG043228	MtrunA17_Chr1g0165521	64.080	799	219	14	1	761	1	769	0.0	983
MsaG043228	MtrunA17_Chr2g0318301	52.129	775	313	12	16	735	14	785	0.0	729
MsaG043228	MtrunA17_Chr8g0352381	42.424	759	373	17	29	731	59	809	0.0	562
MsaG043228	MtrunA17_Chr4g0030441	42.298	766	369	18	27	731	26	779	0.0	555
MsaG043228	MtrunA17_Chr2g0327671	41.583	796	385	19	2	731	1	782	0.0	544
MsaG043228	MtrunA17_Chr1g0202711	41.301	753	380	16	28	729	40	781	1.36e-172	517
MsaG043228	MtrunA17_Chr4g0061081	39.821	781	388	18	28	732	31	805	1.38e-171	516
MsaG043228	MtrunA17_Chr2g0292501	38.499	826	414	20	12	756	12	824	1.69e-167	505
MsaG043228	MtrunA17_Chr6g0468691	39.589	778	401	18	25	742	19	787	1.30e-166	500

Showing 1 to 10 of 507 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043228	AT5G54380.1	48.363	794	338	14	10	735	4	793	0.0	678
MsaG043228	AT2G21480.1	42.105	760	380	16	27	731	49	803	0.0	569
MsaG043228	AT4G39110.1	42.140	757	380	15	29	731	52	804	0.0	569
MsaG043228	AT5G59700.1	42.783	769	373	18	14	731	9	761	0.0	553
MsaG043228	AT3G46290.1	40.256	780	398	17	4	731	1	764	5.72e-180	536
MsaG043228	AT5G61350.1	41.310	794	375	20	24	732	23	810	1.23e-179	536
MsaG043228	AT1G30570.1	38.247	787	414	13	34	749	32	817	3.96e-170	511
MsaG043228	AT5G24010.1	38.970	757	398	17	25	729	22	766	3.42e-163	493
MsaG043228	AT2G39360.1	37.468	774	406	19	14	729	12	765	3.92e-163	492
MsaG043228	AT3G51550.1	37.888	805	410	21	25	742	26	827	1.70e-151	464

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 174 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTAAACCACCGTG+AGG	0.724745	8:-41191548	None:intergenic
AAACAAGTAAACCACCGTGA+GGG	0.671182	8:-41191547	None:intergenic
AAAGTAAGTTTGGCCTTACA+GGG	0.539938	8:-41191901	None:intergenic
AAATCAGATGTTTACTCGTT+CGG	0.345898	8:+41192937	MsaT043228.1:CDS
AACAAAACGTCCTTGTAATA+TGG	0.262578	8:-41192043	None:intergenic
AACAACCTACAAGAGAGACA+AGG	0.699791	8:-41192561	None:intergenic
AACAGTGTATCGATTGAATG+TGG	0.613919	8:+41191661	MsaT043228.1:CDS
AACGAGATTGAGTTGTTGTC+TGG	0.458041	8:+41192523	MsaT043228.1:CDS
AACGTCTTGTGATAGGCATA+GGG	0.502585	8:+41192686	MsaT043228.1:CDS
AACTTAGTCCTAAAATATTC+TGG	0.311222	8:-41192904	None:intergenic

Showing 1 to 10 of 174 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	41191041	41193326	41191041	ID=MsaG043228
Chr8	mRNA	41191041	41193326	41191041	ID=MsaT043228.1;Parent=MsaG043228
Chr8	exon	41191041	41193326	41191041	ID=MsaT043228.1.exon1;Parent=MsaT043228.1
Chr8	CDS	41191041	41193326	41191041	ID=cds.MsaT043228.1;Parent=MsaT043228.1

Gene Sequence

>MsaT043228.1

ATGGTGATGCTAGAAGTTGCCAAGTGTACACCGTTTGTTCTTATTCTTTTACTAAACCTCACATGTCAAGAGTCATTCGCGTCATTCCATCCCGTTGATAATTATTTGGTCGCTTGTGGTTCTTCCCACAGTGTCACGTTTCAGGGTCGAACTTTCGTACCTGACATTGATTTTGAACATTCCAACTTTCAAATAAAAGGAGAAAAATCTTTGGTTGCTACCTCTAAACTGAACAATACCCTTTCACCACTTTATAACTCGGCTCGAATCTTCTTTGAAAAGGCATCCTATATATTCAAAATTCAACAACATGGGAGACACTGGATCCGTCTCCATTTTCACCCTTTACCCGATTCCAACCACAACATGACCTTTGCCTTAATAACGGTAATCGTTGATGGTTATGTGCTTCTTGATTACTTCACTTTTGCAAACTATAGTAACTCTCACTTGATGAAGGAGTATGCCATCAGTGTCACATCTGATGAATTGATTGTCACATTCATCCCTCACGGTGGTTTACTTGTTTTTGTTAATGCCATTGAAGTTGTAACTATGCCAGATGTGCTCTTTCCTGACAATCTAAATCCATCTACCCCTTTCACAGAATCCGTCCTTGAAACAGTGTATCGATTGAATGTGGGAGGCGCAAGTATCAATGCTCAAAATGACACGCTTAGTAGGAGTTGGGAGAGTGATGAAACTTACTTTCGCTCCACCATTACTGCGCTGAATATTTCAACAAGCGTTTCTGCTATAAAGCATCCTGATTTCTTAGAAATTGCAGCACCACCAATGGTTTATGCTACTGCTAAAGCCATGGGAAGTCCCTCAAGGGGTTACCACTTAAATTGGGTATTCCCTGTAAGGCCAAACTTACTTTATTTTGTTCGCGTGCATTTCTGTGACATGATTAGCAACACTACTAACTATATGGTCGTGGATCTATTTATGAATGGTAACAGAATCACGGAGATAAGGGTTTCTGGTGACTTTGTTGAACCATATTACAAGGACGTTTTGTTCAACGCTACAGAGGAGACTCTCACAGTAAGTGTTGGTCCTGCAACAATGTCTACTATAGAAAATGCAACCTTGAATGGGATAGAGATAATGAAGTTCATTAACAGAGTTGACAGTGTTCTAACAAAATCTTCAGGAAGAATTCAAAGAAACAAGAAATTAAAATTAGTCATTATAATTGGAAGTGGTGTATCTGTTTTAACAATTCTAGCATTTCTTGGACTATCATTTTGTTATCTAAAATCCTGCAGGTCCAAGAAAAATTCAGTAAATGCTTACGAATTTCTGAGGCATTTTACTTTGCATGAGATCAAACAAGCAACGAATAATTTTGATGCTCAGCTGCTTATTGGAGCAGGAGGATTTGGAAAGGTGTATAAAGGAAAACTAGAAAATGGGAAAATAGTAGCAATCAAAGTAGCAAATCCTGAATCTAGACAAGGTCTCGGTGAATTCCACAACGAGATTGAGTTGTTGTCTGGTCTTCGTCATTCAAACCTTGTCTCTCTTGTAGGTTGTTGTAATGAAAACTCGGAACTGATTCTAGTGTACAATTACATGGCAAATGGATCTCTCAGTAGTCATCTATATGGGAGAGACTTTGTTCCGCTGTCTTGGAAGCAACGTCTTGTGATAGGCATAGGGGCTGCGAAGGGACTTCTTTATCTTCACACTGGAGCTAAACAAAGCATAATTCACCGTGATGTGAAGACAACAAACATTCTCTTGGATGAAAACCTTGTGCCAAAAGTTGCTGATTTTGGCATATCAAAAAAGGGTCCTCTTCTTGATAAGAGCCACGTTACAACCCATGTAAAGGGTAGCTTTGGCTATCTTGATCCAGAATATTTTAGGACTAAGTTTCTTACTAAGAAATCAGATGTTTACTCGTTCGGGGTGGTGTTGCTTGAAGTTATATGTGGGAAGCCTGCTCTAGATGATGCCCTTCCAACGCAGCAGATGAATTTGGCATTGTGGGCATTAAGCTGCAATAAAAAGGGTACTTTTCATGAAATGATGGACCCTTATTTGATTGGCAAAGTGAATATGGAGTCTGTAAACAAGGTTTTAGAGTTGGCTTGGAAGTGCTTGGAGGAGCGCCGGGCGAACCGACCACCAATGGGGTACATATTATGTCAACTAGAAGAGGCTCTCCATCTTGAGTTGGCATCAGATGTTTTGAATAACAATAAAAATGGGGATTCTTCTACTTATGGCAGTGAAGGAAACGGATTTATAGATGACACAGAAGATGTTGTATGA

Protein sequence

>MsaT043228.1

MVMLEVAKCTPFVLILLLNLTCQESFASFHPVDNYLVACGSSHSVTFQGRTFVPDIDFEHSNFQIKGEKSLVATSKLNNTLSPLYNSARIFFEKASYIFKIQQHGRHWIRLHFHPLPDSNHNMTFALITVIVDGYVLLDYFTFANYSNSHLMKEYAISVTSDELIVTFIPHGGLLVFVNAIEVVTMPDVLFPDNLNPSTPFTESVLETVYRLNVGGASINAQNDTLSRSWESDETYFRSTITALNISTSVSAIKHPDFLEIAAPPMVYATAKAMGSPSRGYHLNWVFPVRPNLLYFVRVHFCDMISNTTNYMVVDLFMNGNRITEIRVSGDFVEPYYKDVLFNATEETLTVSVGPATMSTIENATLNGIEIMKFINRVDSVLTKSSGRIQRNKKLKLVIIIGSGVSVLTILAFLGLSFCYLKSCRSKKNSVNAYEFLRHFTLHEIKQATNNFDAQLLIGAGGFGKVYKGKLENGKIVAIKVANPESRQGLGEFHNEIELLSGLRHSNLVSLVGCCNENSELILVYNYMANGSLSSHLYGRDFVPLSWKQRLVIGIGAAKGLLYLHTGAKQSIIHRDVKTTNILLDENLVPKVADFGISKKGPLLDKSHVTTHVKGSFGYLDPEYFRTKFLTKKSDVYSFGVVLLEVICGKPALDDALPTQQMNLALWALSCNKKGTFHEMMDPYLIGKVNMESVNKVLELAWKCLEERRANRPPMGYILCQLEEALHLELASDVLNNNKNGDSSTYGSEGNGFIDDTEDVV*