AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG043252

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG043252 MtrunA17_Chr8g0361731 95.729 398 13 2 1 397 1 395 0.0 787
MsaG043252 MtrunA17_Chr5g0417001 59.861 431 99 11 1 397 1 391 4.92e-165 468
MsaG043252 MtrunA17_Chr6g0453131 49.392 411 174 11 1 397 1 391 1.14e-124 365
MsaG043252 MtrunA17_Chr5g0442771 50.439 228 104 3 8 232 12 233 6.10e-75 235
MsaG043252 MtrunA17_Chr2g0311651 60.753 186 63 6 11 190 19 200 6.11e-74 233
MsaG043252 MtrunA17_Chr2g0311661 63.314 169 55 4 11 173 18 185 2.55e-72 228
MsaG043252 MtrunA17_Chr2g0318101 45.455 209 101 3 16 212 17 224 1.57e-60 199
MsaG043252 MtrunA17_Chr4g0047841 52.273 176 70 2 16 177 17 192 2.16e-60 199
MsaG043252 MtrunA17_Chr4g0076731 51.163 172 72 3 11 182 51 210 4.40e-59 198
MsaG043252 MtrunA17_Chr7g0252971 46.698 212 86 6 16 217 10 204 2.12e-58 193
MsaG043252 MtrunA17_Chr5g0417791 54.321 162 67 3 16 177 5 159 2.44e-57 188
MsaG043252 MtrunA17_Chr2g0326361 51.445 173 79 2 1 173 1 168 1.02e-56 189
MsaG043252 MtrunA17_Chr4g0018391 44.762 210 99 5 16 222 9 204 2.93e-56 188
MsaG043252 MtrunA17_Chr8g0384721 53.165 158 66 3 16 173 9 158 8.10e-56 185
MsaG043252 MtrunA17_Chr4g0042561 55.000 160 65 3 16 175 11 163 1.63e-55 184
MsaG043252 MtrunA17_Chr3g0124761 48.634 183 67 4 16 185 9 177 4.14e-55 183
MsaG043252 MtrunA17_Chr5g0398971 49.133 173 74 3 16 185 9 170 1.60e-54 184
MsaG043252 MtrunA17_Chr6g0453451 40.530 264 123 7 8 257 16 259 9.29e-54 181
MsaG043252 MtrunA17_Chr4g0060931 45.876 194 83 3 16 196 19 203 2.77e-53 181
MsaG043252 MtrunA17_Chr3g0091921 35.667 300 126 6 8 252 10 297 4.07e-53 179
MsaG043252 MtrunA17_Chr7g0263931 50.595 168 73 4 12 176 8 168 4.40e-53 179
MsaG043252 MtrunA17_Chr2g0318081 49.451 182 80 5 16 197 18 187 5.35e-53 180
MsaG043252 MtrunA17_Chr4g0038751 48.649 185 76 5 1 184 4 170 6.28e-53 178
MsaG043252 MtrunA17_Chr8g0372121 43.367 196 93 5 10 201 2 183 6.67e-53 178
MsaG043252 MtrunA17_Chr4g0056541 47.619 168 72 3 16 180 9 163 2.47e-52 178
MsaG043252 MtrunA17_Chr3g0130731 51.266 158 68 3 16 173 9 157 2.63e-52 176
MsaG043252 MtrunA17_Chr5g0405211 45.109 184 83 5 8 186 2 172 3.91e-52 177
MsaG043252 MtrunA17_Chr8g0359921 51.497 167 71 5 16 182 16 172 6.45e-52 176
MsaG043252 MtrunA17_Chr2g0309891 50.932 161 67 4 16 174 8 158 7.05e-52 177
MsaG043252 MtrunA17_Chr6g0461661 45.455 176 88 2 11 185 14 182 1.11e-50 174
MsaG043252 MtrunA17_Chr2g0316971 50.000 162 70 2 16 175 25 177 3.64e-50 173
MsaG043252 MtrunA17_Chr3g0139331 48.864 176 76 3 1 176 1 162 8.88e-50 171
MsaG043252 MtrunA17_Chr7g0253011 39.464 261 123 7 1 237 1 250 1.16e-49 172
MsaG043252 MtrunA17_Chr6g0484441 46.471 170 78 3 10 179 1 157 3.57e-49 169
MsaG043252 MtrunA17_Chr6g0481091 42.328 189 95 4 16 202 8 184 3.74e-49 166
MsaG043252 MtrunA17_Chr4g0017921 50.000 164 63 4 16 175 10 158 9.76e-49 169
MsaG043252 MtrunA17_Chr1g0200561 45.977 174 78 4 3 173 8 168 1.65e-48 168
MsaG043252 MtrunA17_Chr3g0109821 45.596 193 81 6 16 205 8 179 2.06e-48 174
MsaG043252 MtrunA17_Chr2g0309331 35.688 269 144 8 16 275 12 260 2.51e-48 167
MsaG043252 MtrunA17_Chr8g0346001 46.988 166 77 4 16 175 17 177 6.15e-48 169
MsaG043252 MtrunA17_Chr7g0214071 47.253 182 81 4 1 181 1 168 8.54e-48 163
MsaG043252 MtrunA17_Chr5g0428991 50.307 163 68 4 17 177 28 179 2.44e-47 171
MsaG043252 MtrunA17_Chr1g0147421 46.243 173 81 3 3 174 16 177 3.33e-47 165
MsaG043252 MtrunA17_Chr5g0433781 46.584 161 73 3 16 174 8 157 7.75e-47 169
MsaG043252 MtrunA17_Chr5g0400461 46.707 167 66 4 16 173 8 160 1.07e-46 162
MsaG043252 MtrunA17_Chr1g0183741 37.179 234 121 4 16 246 12 222 2.48e-46 160
MsaG043252 MtrunA17_Chr3g0130101 45.732 164 76 4 12 173 5 157 1.24e-45 160
MsaG043252 MtrunA17_Chr3g0128151 47.273 165 74 4 17 179 25 178 1.64e-45 165
MsaG043252 MtrunA17_Chr4g0054791 46.784 171 79 4 16 183 8 169 1.76e-45 159
MsaG043252 MtrunA17_Chr7g0217721 46.061 165 81 3 17 175 22 184 4.12e-45 159
MsaG043252 MtrunA17_Chr2g0312321 39.256 242 117 8 10 241 7 228 4.70e-45 157
MsaG043252 MtrunA17_Chr3g0144271 34.551 301 118 7 8 233 17 313 1.24e-44 159
MsaG043252 MtrunA17_Chr8g0364791 43.827 162 78 4 14 173 6 156 1.34e-44 160
MsaG043252 MtrunA17_Chr1g0201021 47.024 168 72 5 12 174 15 170 3.08e-44 161
MsaG043252 MtrunA17_Chr3g0128111 43.636 165 80 4 17 179 45 198 3.49e-44 153
MsaG043252 MtrunA17_Chr7g0217711 51.562 128 60 1 17 144 22 147 9.62e-43 147
MsaG043252 MtrunA17_Chr7g0261411 40.964 166 85 1 6 171 2 154 1.10e-42 151
MsaG043252 MtrunA17_Chr8g0384201 41.975 162 81 4 14 173 6 156 3.97e-42 154
MsaG043252 MtrunA17_Chr1g0197361 44.311 167 72 5 16 176 10 161 4.44e-42 155
MsaG043252 MtrunA17_Chr8g0385991 43.114 167 85 3 4 170 8 164 1.07e-41 146
MsaG043252 MtrunA17_Chr1g0197351 42.857 168 81 4 14 175 42 200 3.12e-41 151
MsaG043252 MtrunA17_Chr3g0092671 39.785 186 95 6 16 198 7 178 4.37e-40 149
MsaG043252 MtrunA17_Chr3g0131911 42.222 180 93 4 4 181 8 178 1.19e-37 136
MsaG043252 MtrunA17_Chr8g0345671 49.254 134 64 3 17 147 14 146 1.05e-36 137
MsaG043252 MtrunA17_Chr4g0026141 35.023 217 124 6 10 221 1 205 1.78e-36 134
MsaG043252 MtrunA17_Chr7g0266701 31.602 231 141 8 14 237 4 224 8.08e-35 129
MsaG043252 MtrunA17_Chr2g0321631 40.000 165 80 6 16 171 6 160 2.01e-32 122
MsaG043252 MtrunA17_Chr8g0345691 47.244 127 63 3 17 140 15 140 3.72e-32 125
MsaG043252 MtrunA17_Chr3g0113001 37.255 204 93 6 59 245 10 195 1.79e-29 115
MsaG043252 MtrunA17_Chr8g0345711 40.146 137 78 3 17 150 15 150 2.38e-29 112
MsaG043252 MtrunA17_Chr4g0050701 37.342 158 88 2 16 173 13 159 1.29e-28 110
MsaG043252 MtrunA17_Chr8g0345731 41.844 141 76 5 14 148 23 163 4.15e-27 106
MsaG043252 MtrunA17_Chr8g0345721 35.976 164 72 3 17 148 38 200 6.15e-26 103
MsaG043252 MtrunA17_Chr2g0321741 43.925 107 57 2 34 139 12 116 7.37e-26 107
MsaG043252 MtrunA17_Chr8g0345741 41.176 119 66 3 25 140 2 119 1.57e-23 95.9
MsaG043252 MtrunA17_Chr8g0345701 36.879 141 69 5 17 140 10 147 1.07e-20 88.6
MsaG043252 MtrunA17_Chr8g0384351 32.738 168 82 6 16 183 12 148 1.25e-19 85.9
MsaG043252 MtrunA17_Chr3g0113031 40.566 106 52 3 77 180 3 99 2.56e-19 87.0
MsaG043252 MtrunA17_Chr7g0243371 45.455 77 42 0 67 143 17 93 3.07e-19 82.8
MsaG043252 MtrunA17_Chr3g0130321 31.481 162 96 5 16 172 9 160 2.04e-17 80.5
MsaG043252 MtrunA17_Chr7g0251651 29.518 166 100 6 17 180 21 171 3.40e-16 76.6
MsaG043252 MtrunA17_Chr7g0251671 31.818 132 82 5 17 145 13 139 1.31e-15 73.9
MsaG043252 MtrunA17_Chr7g0251661 31.884 138 87 5 12 146 7 140 2.88e-15 72.8
MsaG043252 MtrunA17_Chr1g0194791 60.417 48 18 1 16 62 48 95 2.48e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG043252 AT1G26870.1 60.727 275 89 5 1 263 1 268 3.43e-108 325
MsaG043252 AT5G39820.1 67.980 203 52 4 2 191 8 210 1.22e-98 297
MsaG043252 AT2G43000.1 60.116 173 57 3 8 180 12 172 1.20e-72 228
MsaG043252 AT3G12910.1 56.897 174 68 4 7 174 14 186 4.51e-61 199
MsaG043252 AT2G02450.1 47.087 206 85 5 13 218 50 231 1.33e-59 198
MsaG043252 AT2G02450.2 47.087 206 85 5 13 218 50 231 1.61e-59 199
MsaG043252 AT3G15510.1 42.857 224 107 3 18 239 21 225 4.10e-59 196
MsaG043252 AT1G69490.1 45.813 203 103 4 16 218 11 206 3.20e-58 191
MsaG043252 AT3G04070.2 53.529 170 64 3 16 177 12 174 8.83e-58 192
MsaG043252 AT1G61110.1 53.143 175 71 4 16 182 18 189 2.48e-57 191
MsaG043252 AT3G04070.1 51.397 179 70 3 16 177 12 190 6.93e-57 190
MsaG043252 AT5G63790.1 45.098 204 94 5 12 214 47 233 4.66e-55 184
MsaG043252 AT5G63790.2 45.098 204 94 5 12 214 57 243 4.89e-55 184
MsaG043252 AT1G01720.1 52.410 166 71 3 16 181 9 166 5.75e-55 183
MsaG043252 AT1G76420.1 45.989 187 91 1 1 187 9 185 1.11e-54 184
MsaG043252 AT5G61430.1 48.108 185 85 3 1 183 1 176 1.93e-54 183
MsaG043252 AT4G27410.2 50.595 168 72 3 16 183 16 172 3.34e-54 181
MsaG043252 AT2G17040.1 50.286 175 70 4 11 184 3 161 5.24e-54 180
MsaG043252 AT5G08790.1 51.534 163 71 4 12 173 4 159 2.27e-53 179
MsaG043252 AT1G12260.2 48.810 168 70 4 16 180 9 163 4.30e-53 180
MsaG043252 AT5G07680.2 43.868 212 100 3 16 217 5 207 4.78e-53 179
MsaG043252 AT1G12260.1 48.810 168 70 4 16 180 9 163 4.85e-53 181
MsaG043252 AT4G36160.2 47.701 174 75 4 16 186 16 176 5.34e-53 181
MsaG043252 AT4G36160.1 47.701 174 75 4 16 186 12 172 5.44e-53 181
MsaG043252 AT4G36160.3 47.701 174 75 4 16 186 12 172 5.44e-53 181
MsaG043252 AT5G07680.1 43.868 212 100 3 16 217 19 221 6.78e-53 179
MsaG043252 AT1G52880.1 54.438 169 66 3 18 180 21 184 1.03e-52 178
MsaG043252 AT5G39610.1 44.554 202 89 4 16 205 22 212 1.08e-52 177
MsaG043252 AT2G18060.3 47.701 174 74 5 16 186 11 170 2.89e-52 179
MsaG043252 AT2G18060.1 47.701 174 74 5 16 186 11 170 2.89e-52 179
MsaG043252 AT3G15500.1 51.190 168 67 4 16 181 16 170 5.60e-52 176
MsaG043252 AT1G77450.1 49.697 165 74 3 16 180 12 167 6.27e-52 174
MsaG043252 AT2G24430.2 47.093 172 81 1 8 179 10 171 8.16e-52 176
MsaG043252 AT2G24430.1 47.093 172 81 1 8 179 10 171 8.16e-52 176
MsaG043252 AT1G52890.1 51.479 169 66 5 16 182 16 170 1.23e-51 176
MsaG043252 AT1G62700.1 43.077 195 88 4 16 200 9 190 5.40e-51 176
MsaG043252 AT1G62700.2 43.077 195 88 4 16 200 9 190 5.40e-51 176
MsaG043252 AT3G17730.1 48.193 166 73 3 16 179 8 162 6.25e-51 171
MsaG043252 AT4G10350.1 50.307 163 67 3 16 175 11 162 6.52e-51 174
MsaG043252 AT5G66300.1 44.240 217 98 7 16 224 14 215 2.03e-50 171
MsaG043252 AT5G18270.1 47.368 171 81 3 5 175 13 174 2.48e-50 172
MsaG043252 AT3G18400.1 48.235 170 76 3 10 179 1 158 3.58e-50 171
MsaG043252 AT3G04060.1 48.256 172 77 3 16 183 22 185 4.05e-50 172
MsaG043252 AT5G62380.2 47.826 161 68 4 16 173 9 156 4.12e-50 172
MsaG043252 AT5G62380.1 47.826 161 68 4 16 173 9 156 4.12e-50 172
MsaG043252 AT4G27410.3 45.946 185 72 4 16 183 16 189 6.34e-50 171
MsaG043252 AT1G65910.1 49.693 163 69 3 14 174 6 157 7.13e-50 178
MsaG043252 AT1G33280.1 50.307 163 64 3 16 175 10 158 7.47e-50 171
MsaG043252 AT5G18270.2 46.784 171 82 3 5 175 13 174 1.64e-49 171
MsaG043252 AT3G29035.1 47.120 191 86 6 7 194 16 194 2.37e-49 169
MsaG043252 AT3G03200.1 45.604 182 86 5 16 194 8 179 3.69e-49 173
MsaG043252 AT1G71930.2 37.743 257 137 8 10 262 5 242 3.73e-49 169
MsaG043252 AT1G71930.1 37.743 257 137 8 10 262 5 242 3.73e-49 169
MsaG043252 AT4G17980.1 47.500 160 75 2 16 173 8 160 4.83e-49 167
MsaG043252 AT4G17980.2 47.500 160 75 2 16 173 8 160 5.66e-49 168
MsaG043252 AT3G15170.1 47.337 169 82 2 11 179 17 178 1.25e-48 167
MsaG043252 AT5G17260.1 46.199 171 80 4 16 184 8 168 1.36e-48 172
MsaG043252 AT5G53950.1 45.930 172 86 2 12 183 15 179 1.96e-48 169
MsaG043252 AT3G61910.1 46.707 167 80 4 16 175 13 177 4.73e-48 167
MsaG043252 AT2G46770.1 46.108 167 81 3 16 175 18 182 1.43e-47 166
MsaG043252 AT3G10500.1 46.667 165 75 4 14 176 9 162 3.59e-46 166
MsaG043252 AT4G35580.3 48.824 170 73 5 6 173 2 159 1.22e-45 165
MsaG043252 AT1G33060.2 46.951 164 74 3 12 173 22 174 1.26e-45 166
MsaG043252 AT4G35580.1 48.824 170 73 5 6 173 2 159 1.33e-45 164
MsaG043252 AT4G35580.2 48.824 170 73 5 6 173 2 159 1.37e-45 165
MsaG043252 AT1G32770.1 45.122 164 84 3 16 175 18 179 1.40e-45 160
MsaG043252 AT1G33060.1 46.951 164 74 3 12 173 22 174 1.44e-45 166
MsaG043252 AT1G54330.1 46.707 167 73 3 16 180 8 160 1.53e-45 159
MsaG043252 AT1G34180.3 45.143 175 83 3 4 176 6 169 1.55e-45 163
MsaG043252 AT5G13180.1 47.399 173 74 3 4 176 8 163 1.97e-45 157
MsaG043252 AT1G79580.3 46.626 163 71 4 16 175 19 168 2.45e-45 160
MsaG043252 AT1G79580.5 46.626 163 71 4 16 175 19 168 2.45e-45 160
MsaG043252 AT1G79580.4 46.626 163 71 4 16 175 19 168 2.45e-45 160
MsaG043252 AT1G79580.2 46.626 163 71 4 16 175 19 168 2.45e-45 160
MsaG043252 AT1G79580.1 46.626 163 71 4 16 175 19 168 2.45e-45 160
MsaG043252 AT1G32510.1 39.035 228 118 6 16 232 8 225 2.61e-45 158
MsaG043252 AT5G46590.2 54.688 128 55 2 16 141 8 134 5.52e-45 157
MsaG043252 AT5G46590.1 54.688 128 55 2 16 141 8 134 7.44e-45 157
MsaG043252 AT1G34180.1 45.143 175 83 3 4 176 6 169 1.05e-44 163
MsaG043252 AT3G10490.1 43.023 172 86 4 6 175 19 180 1.40e-44 154
MsaG043252 AT1G56010.2 47.368 171 69 5 10 173 15 171 1.42e-44 157
MsaG043252 AT1G34190.1 44.571 175 82 4 5 176 7 169 4.11e-44 161
MsaG043252 AT3G12977.1 43.820 178 89 4 2 178 5 172 7.61e-44 154
MsaG043252 AT5G04410.1 45.055 182 83 7 14 192 9 176 1.03e-43 160
MsaG043252 AT3G10480.1 44.578 166 76 4 14 175 27 180 1.50e-43 157
MsaG043252 AT3G10480.2 44.048 168 73 4 14 175 27 179 1.87e-43 157
MsaG043252 AT1G34180.4 41.711 187 84 3 4 176 6 181 3.96e-43 157
MsaG043252 AT3G10490.2 44.512 164 79 4 14 175 27 180 6.04e-43 156
MsaG043252 AT5G24590.2 46.199 171 79 4 8 175 6 166 7.65e-43 155
MsaG043252 AT1G34180.2 41.711 187 84 3 4 176 6 181 1.96e-42 157
MsaG043252 AT5G09330.5 41.975 162 81 4 14 173 6 156 3.23e-41 152
MsaG043252 AT5G09330.2 41.975 162 81 4 14 173 6 156 3.23e-41 152
MsaG043252 AT5G09330.4 41.975 162 81 4 14 173 6 156 3.23e-41 152
MsaG043252 AT5G09330.3 41.975 162 81 4 14 173 6 156 3.23e-41 152
MsaG043252 AT5G09330.1 41.975 162 81 4 14 173 6 156 3.23e-41 152
MsaG043252 AT5G64060.1 33.582 268 150 10 14 272 6 254 7.71e-41 148
MsaG043252 AT3G49530.2 36.620 213 112 5 17 216 16 218 1.24e-40 149
MsaG043252 AT4G28530.1 39.674 184 82 3 6 173 2 172 1.40e-40 147
MsaG043252 AT3G49530.1 36.620 213 112 5 17 216 16 218 3.80e-40 149
MsaG043252 AT2G33480.1 42.458 179 88 5 1 178 1 165 1.29e-39 142
MsaG043252 AT5G22290.1 39.535 172 83 4 14 181 21 175 5.07e-39 143
MsaG043252 AT2G33480.2 41.899 179 87 5 1 178 1 163 2.27e-38 139
MsaG043252 AT3G10480.3 37.563 197 78 4 14 175 27 213 6.08e-38 144
MsaG043252 AT3G44290.2 46.825 126 64 2 15 139 15 138 1.04e-37 136
MsaG043252 AT2G27300.1 44.531 128 68 2 13 139 13 138 2.47e-37 138
MsaG043252 AT3G44290.1 46.825 126 64 2 15 139 15 138 4.78e-37 137
MsaG043252 AT5G04395.1 39.024 164 84 3 6 155 20 181 5.82e-35 127
MsaG043252 AT5G61430.2 51.327 113 46 2 62 174 1 104 1.73e-34 129
MsaG043252 AT1G32870.2 50.769 130 58 3 14 141 10 135 4.39e-33 130
MsaG043252 AT1G32870.1 50.769 130 58 3 14 141 10 135 4.60e-33 130
MsaG043252 AT2G43000.2 58.095 105 32 3 76 180 2 94 4.71e-33 123
MsaG043252 AT1G32870.3 50.769 130 58 3 14 141 46 171 9.56e-33 129
MsaG043252 AT5G22380.1 35.052 194 105 8 17 203 8 187 1.66e-30 117
MsaG043252 AT4G10350.2 48.696 115 48 2 61 175 12 115 3.76e-30 118
MsaG043252 AT5G64530.1 39.264 163 82 3 16 173 5 155 5.71e-30 114
MsaG043252 AT3G44350.2 35.429 175 95 5 10 177 1 164 1.95e-29 114
MsaG043252 AT3G12977.2 45.833 120 55 3 59 178 10 119 5.26e-29 113
MsaG043252 AT1G56010.1 49.138 116 43 3 62 173 1 104 7.67e-29 113
MsaG043252 AT5G64530.2 43.307 127 60 2 16 142 5 119 1.01e-28 110
MsaG043252 AT4G01550.1 43.284 134 72 3 15 144 5 138 2.22e-28 116
MsaG043252 AT3G44350.1 38.000 150 83 4 10 152 1 147 6.55e-28 108
MsaG043252 AT4G01520.1 34.737 190 102 7 17 201 7 179 7.31e-25 103
MsaG043252 AT4G01540.3 41.481 135 74 4 15 144 5 139 1.81e-24 104
MsaG043252 AT4G01540.4 40.411 146 79 5 15 155 5 147 2.58e-24 103
MsaG043252 AT4G01540.1 41.481 135 74 4 15 144 5 139 3.70e-24 104
MsaG043252 AT4G01540.2 41.481 135 74 4 15 144 5 139 3.91e-24 103
MsaG043252 AT1G02250.1 34.673 199 113 8 17 210 6 192 3.42e-23 100
MsaG043252 AT4G28530.2 38.235 136 68 2 6 125 2 137 2.05e-22 97.1
MsaG043252 AT1G02230.1 38.806 134 74 5 17 145 6 136 1.05e-21 95.9
MsaG043252 AT3G04420.2 38.583 127 72 3 17 139 6 130 5.88e-21 92.4
MsaG043252 AT2G33480.3 42.056 107 51 3 67 173 8 103 6.44e-21 90.5
MsaG043252 AT2G18060.2 47.368 95 36 4 92 186 2 82 1.01e-20 91.7
MsaG043252 AT3G04420.1 38.583 127 72 3 17 139 6 130 2.31e-20 91.7
MsaG043252 AT1G01010.1 29.084 251 149 8 17 255 6 239 6.16e-19 88.6
MsaG043252 AT1G02220.1 37.795 127 70 4 17 139 6 127 8.79e-17 82.0
MsaG043252 AT5G50820.1 36.641 131 71 5 16 143 19 140 7.63e-16 75.9
MsaG043252 AT3G04430.1 36.842 133 70 5 20 140 6 136 3.16e-15 74.3
MsaG043252 AT5G14000.2 31.579 133 85 3 17 147 18 146 1.18e-14 71.6
MsaG043252 AT5G14000.1 27.108 166 103 4 17 180 18 167 1.43e-14 72.4
MsaG043252 AT3G56530.1 30.189 159 95 5 16 171 54 199 3.07e-14 73.6
MsaG043252 AT3G10490.4 38.202 89 45 3 87 175 2 80 7.46e-14 72.8
MsaG043252 AT3G10490.3 38.202 89 45 3 87 175 2 80 7.46e-14 72.8
MsaG043252 AT5G22290.2 36.957 92 38 3 93 181 2 76 4.37e-12 65.9

Find 95 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATCAATGGATCAATAAT+TGG 0.177383 8:+41799220 None:intergenic
TGAAATTGGTAACCGGTATA+AGG 0.232151 8:+41799192 None:intergenic
TTAGGAATGTTAGCCATTAA+TGG 0.250578 8:+41799001 None:intergenic
GTCTTGTCTACATATTTCTT+TGG 0.251750 8:+41800341 None:intergenic
CCAGCTCTTGTTACCCTATT+AGG 0.256540 8:+41800536 None:intergenic
CTTGAAGAGGTTATGCTTCC+AGG 0.267006 8:-41801377 MsaT043252.1:CDS
AGATCTTGATCATTTGAAAT+TGG 0.267969 8:+41799178 None:intergenic
TCATGTTTGAGGAACAAAAT+TGG 0.269676 8:+41799374 None:intergenic
TTACAAGACCATTACAATAA+TGG 0.289925 8:-41799028 MsaT043252.1:CDS
CAATAATGGGTATCCATTAA+TGG 0.291946 8:-41799014 MsaT043252.1:CDS
ATTATAAGATGGAACATCTA+AGG 0.299587 8:+41799246 None:intergenic
TACAAGACCATTACAATAAT+GGG 0.299937 8:-41799027 MsaT043252.1:CDS
TATTCCACTTGTAGGAATCT+TGG 0.310338 8:-41799519 MsaT043252.1:intron
TTCCTGTACTTTCTGTCTCT+TGG 0.313082 8:+41800569 None:intergenic
GGAACAGTGCAAGACCTAAT+AGG 0.314506 8:-41800550 MsaT043252.1:CDS
GGGTAACAAGAGCTGGGTTT+TGG 0.314918 8:-41800529 MsaT043252.1:CDS
AGGTTATGCTTCCAGGGTTT+AGG 0.326370 8:-41801370 MsaT043252.1:CDS
GGAAGTCATCAAGTCTTGTT+TGG 0.332787 8:-41798883 MsaT043252.1:CDS
ACACGAGACACGTTCGCATT+AGG 0.344052 8:+41798983 None:intergenic
GAACCTTCTGAGGAATAAAT+AGG 0.364933 8:+41800485 None:intergenic
ATTCCACTTGTAGGAATCTT+GGG 0.366315 8:-41799518 MsaT043252.1:intron
TTCAGTGTACCTCTCAATAT+TGG 0.371396 8:-41798914 MsaT043252.1:CDS
CTTTGTTATCATCATGTTTG+AGG 0.377564 8:+41799363 None:intergenic
CCAACTGATGAAGAACTTGT+TGG 0.382953 8:-41801341 MsaT043252.1:CDS
GAAATTGGTAACCGGTATAA+GGG 0.389296 8:+41799193 None:intergenic
TCAGAAGGTTCTAAGTGTAT+TGG 0.394447 8:-41800473 MsaT043252.1:CDS
TGTATAGAGTTGGCAAGTAC+AGG 0.404014 8:-41800617 MsaT043252.1:intron
AAGGGGTTAAGTGTTGTGTT+AGG 0.408400 8:+41799290 None:intergenic
CAAAGTGTAGTACTACTAGA+AGG 0.410066 8:+41799271 None:intergenic
ATGGATACCCATTATTGTAA+TGG 0.426120 8:+41799020 None:intergenic
TACTACCAAGTGTTATACTT+AGG 0.432517 8:-41798819 None:intergenic
GATCATTTGAAATTGGTAAC+CGG 0.434751 8:+41799185 None:intergenic
ACTACCAAGTGTTATACTTA+GGG 0.437461 8:-41798818 None:intergenic
TCTACCTTTGTAGAAAACTA+AGG 0.437881 8:+41800439 None:intergenic
GAACAGTGCAAGACCTAATA+GGG 0.447391 8:-41800549 MsaT043252.1:CDS
ATAATTGGATTATTATAAGA+TGG 0.450751 8:+41799235 None:intergenic
TTTACTTACATTGGCTGGAA+TGG 0.458070 8:+41800319 None:intergenic
GAAGTCATCAAGTCTTGTTT+GGG 0.460153 8:-41798882 MsaT043252.1:CDS
CAAAAGGAGTCAAAACTGAT+TGG 0.462657 8:-41800412 MsaT043252.1:CDS
GAGGTTGATGTTTCAAGTAA+AGG 0.463138 8:+41799427 None:intergenic
CCTAATAGGGTAACAAGAGC+TGG 0.463143 8:-41800536 MsaT043252.1:CDS
TATAAGGGTTTGTAAATCAA+TGG 0.465297 8:+41799208 None:intergenic
TAGGATATGGAAGAGAGAAA+TGG 0.474701 8:-41801410 None:intergenic
ATATTTATAAATTTGATCCA+TGG 0.478110 8:-41801256 MsaT043252.1:CDS
GTTGGCAAGTACAGGGGAGA+AGG 0.480074 8:-41800609 MsaT043252.1:CDS
AAAGAGCTCTCTCTCACTCA+TGG 0.486372 8:-41799456 MsaT043252.1:CDS
TATTTATAAATTTGATCCAT+GGG 0.487821 8:-41801255 MsaT043252.1:CDS
CCAACAAGTTCTTCATCAGT+TGG 0.490455 8:+41801341 None:intergenic
ATCATTTGTTAGAACATTGG+AGG 0.492381 8:+41799408 None:intergenic
ATCATGTAACAAAACTTCAA+TGG 0.495840 8:-41799113 MsaT043252.1:CDS
TGCATCATTTGTTAGAACAT+TGG 0.496772 8:+41799405 None:intergenic
TTGGATACGGTTCGACCGGT+TGG 0.497539 8:-41798944 MsaT043252.1:CDS
TGATTTACAAACCCTTATAC+CGG 0.505584 8:-41799204 MsaT043252.1:CDS
ATATTGAGAGGTACACTGAA+TGG 0.506196 8:+41798917 None:intergenic
CTAGAGTGACTTGCAAAGCT+AGG 0.507948 8:+41799337 None:intergenic
TATTGAGAGGTACACTGAAT+GGG 0.512022 8:+41798918 None:intergenic
GTCTTACTTGGTAGATCCCA+TGG 0.514805 8:+41801239 None:intergenic
AGGAATCTTGGGCAATATGC+AGG 0.518840 8:-41799507 MsaT043252.1:CDS
AGCTCTTTGAGCTGTAGCAT+TGG 0.520084 8:+41799471 None:intergenic
TTGAAGAGGTTATGCTTCCA+GGG 0.523265 8:-41801376 MsaT043252.1:CDS
TGTTGATGATCAACAAGAGT+TGG 0.526593 8:-41798963 MsaT043252.1:CDS
TACAAAGGTAGAGCTGCAAA+AGG 0.527371 8:-41800428 MsaT043252.1:CDS
AGACCTATTTATTCCTCAGA+AGG 0.528476 8:-41800488 MsaT043252.1:CDS
CTCTCAATATTGGTGATGCA+TGG 0.529075 8:-41798904 MsaT043252.1:CDS
ACACTGAATGGGAATCCAAC+CGG 0.532760 8:+41798929 None:intergenic
AGTGTTGTGTTAGGTTATTG+TGG 0.533214 8:+41799299 None:intergenic
TTGAGGAACAAAATTGGTTG+TGG 0.548581 8:+41799380 None:intergenic
GATGATGAATCTATGAGAGA+AGG 0.549029 8:+41800368 None:intergenic
TTGTTACATGATGTTTCAAG+AGG 0.556658 8:+41799124 None:intergenic
CAAGATCTTAACCTTAGCAC+TGG 0.557408 8:-41799163 MsaT043252.1:CDS
GTTGATGTTTCAAGTAAAGG+TGG 0.562150 8:+41799430 None:intergenic
GTATAGAGTTGGCAAGTACA+GGG 0.573043 8:-41800616 MsaT043252.1:intron
AAGAGCTCTCTCTCACTCAT+GGG 0.573676 8:-41799455 MsaT043252.1:CDS
TTATAAGATGGAACATCTAA+GGG 0.574187 8:+41799247 None:intergenic
AGAGTTGGATACGGTTCGAC+CGG 0.576420 8:-41798948 MsaT043252.1:CDS
AAAGTGTAGTACTACTAGAA+GGG 0.579468 8:+41799272 None:intergenic
GGGTTCATCAGAAGTACAAG+AGG 0.581707 8:+41798853 None:intergenic
TGATCAACAAGAGTTGGATA+CGG 0.594638 8:-41798957 MsaT043252.1:CDS
GTAACAACTTCAAACTACAT+TGG 0.595345 8:-41799055 MsaT043252.1:CDS
CAAGTACAGGGGAGAAGGAG+TGG 0.600593 8:-41800604 MsaT043252.1:CDS
CTAATAGGGTAACAAGAGCT+GGG 0.601926 8:-41800535 MsaT043252.1:CDS
TTGATGTTTCAAGTAAAGGT+GGG 0.610295 8:+41799431 None:intergenic
AAGTGTAGTACTACTAGAAG+GGG 0.613840 8:+41799273 None:intergenic
GTCCAAGAGACAGAAAGTAC+AGG 0.615144 8:-41800571 MsaT043252.1:CDS
AGAATACTAAGCCAGTGCTA+AGG 0.618095 8:+41799152 None:intergenic
GTTGGATGAAACCTAAACCC+TGG 0.628808 8:+41801359 None:intergenic
CATGCATCACCAATATTGAG+AGG 0.629735 8:+41798905 None:intergenic
AATACACTTAGAACCTTCTG+AGG 0.638711 8:+41800475 None:intergenic
TTGATGAGCTCAATAGCAAG+AGG 0.641698 8:+41801287 None:intergenic
TGGTTGTGAGAAACTTGAAG+AGG 0.645223 8:-41801390 MsaT043252.1:CDS
CTTGGTAGTAGAATAACTAG+AGG 0.660558 8:+41798832 None:intergenic
TAAACCCTAAGTATAACACT+TGG 0.675221 8:+41798814 None:intergenic
TGATGAGCTCAATAGCAAGA+GGG 0.682356 8:+41801288 None:intergenic
TATAGAGTTGGCAAGTACAG+GGG 0.692122 8:-41800615 MsaT043252.1:intron
TTGGTAGTAGAATAACTAGA+GGG 0.705649 8:+41798833 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 41798820 41801426 41798820 ID=MsaG043252
Chr8 mRNA 41798820 41801426 41798820 ID=MsaT043252.1;Parent=MsaG043252
Chr8 exon 41798820 41799527 41798820 ID=MsaT043252.1.exon3;Parent=MsaT043252.1
Chr8 CDS 41798820 41799527 41798820 ID=cds.MsaT043252.1;Parent=MsaT043252.1
Chr8 exon 41800328 41800632 41800328 ID=MsaT043252.1.exon2;Parent=MsaT043252.1
Chr8 CDS 41800328 41800632 41800328 ID=cds.MsaT043252.1;Parent=MsaT043252.1
Chr8 exon 41801246 41801426 41801246 ID=MsaT043252.1.exon1;Parent=MsaT043252.1
Chr8 CDS 41801246 41801426 41801246 ID=cds.MsaT043252.1;Parent=MsaT043252.1
Gene Sequence

>MsaT043252.1

ATGGAAGAGAGAAATGGTTGTGAGAAACTTGAAGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTTGTTGGATTTTACCTAAAGAAAAAGATTCAACAACGCCCTCTTGCTATTGAGCTCATCAAGCAGCTTGATATTTATAAATTTGATCCATGGGATCTACCAAAGTTGGCAAGTACAGGGGAGAAGGAGTGGTATTTTTATTGTCCAAGAGACAGAAAGTACAGGAACAGTGCAAGACCTAATAGGGTAACAAGAGCTGGGTTTTGGAAAGCAACAGGAACAGACAGACCTATTTATTCCTCAGAAGGTTCTAAGTGTATTGGCTTGAAAAAATCCTTAGTTTTCTACAAAGGTAGAGCTGCAAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCATAGATTCATCATCATCTCCAAAGAAATATGTAGACAAGACCATTCCAGCCAATGAATCTTGGGCAATATGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCTCACTCATGGGTCCCACCTTTACTTGAAACATCAACCTCCAATGTTCTAACAAATGATGCAAACCACAACCAATTTTGTTCCTCAAACATGATGATAACAAAGAAACCTAGCTTTGCAAGTCACTCTAGTACTACTAATAATAACCACAATAACCTAACACAACACTTAACCCCTTCTAGTAGTACTACACTTTGTCCCTTAGATGTTCCATCTTATAATAATCCAATTATTGATCCATTGATTTACAAACCCTTATACCGGTTACCAATTTCAAATGATCAAGATCTTAACCTTAGCACTGGCTTAGTATTCTCATCTCCTCTTGAAACATCATGTAACAAAACTTCAATGGATTTTTCTTCTTTGCTATTAGGTATGTCATCTGAAGTAACAACTTCAAACTACATTGGTAATTTACAAGACCATTACAATAATGGGTATCCATTAATGGCTAACATTCCTAATGCGAACGTGTCTCGTGTTGATGATCAACAAGAGTTGGATACGGTTCGACCGGTTGGATTCCCATTCAGTGTACCTCTCAATATTGGTGATGCATGGAAGTCATCAAGTCTTGTTTGGGATACTTCCTCTTGTACTTCTGATGAACCCTCTAGTTATTCTACTACCAAGTGTTATACTTAG
Protein sequence

>MsaT043252.1

MEERNGCEKLEEVMLPGFRFHPTDEELVGFYLKKKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLIDSSSSPKKYVDKTIPANESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLTNDANHNQFCSSNMMITKKPSFASHSSTTNNNHNNLTQHLTPSSSTTLCPLDVPSYNNPIIDPLIYKPLYRLPISNDQDLNLSTGLVFSSPLETSCNKTSMDFSSLLLGMSSEVTTSNYIGNLQDHYNNGYPLMANIPNANVSRVDDQQELDTVRPVGFPFSVPLNIGDAWKSSSLVWDTSSCTSDEPSSYSTTKCYT*