AlfalfaGEDB | MsaG043252

M. sativa ssp. caerulea / MsaG043252

KEGG: -
GO: -
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043252	XP_013445709.1	95.729	398	13	2	1	397	1	395	0.0	787

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043252	sp\|Q9ZVH0\|FEZ_ARATH	60.727	275	89	5	1	263	1	268	3.38e-107	325

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043252	tr\|A0A072U1R3\|A0A072U1R3_MEDTR	95.729	398	13	2	1	397	1	395	0.0	787

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TFs/TRs:

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Gene ID	Type	Classification
MsaG043252	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043252	MtrunA17_Chr8g0361731	95.729	398	13	2	1	397	1	395	0.0	787
MsaG043252	MtrunA17_Chr5g0417001	59.861	431	99	11	1	397	1	391	4.92e-165	468
MsaG043252	MtrunA17_Chr6g0453131	49.392	411	174	11	1	397	1	391	1.14e-124	365
MsaG043252	MtrunA17_Chr5g0442771	50.439	228	104	3	8	232	12	233	6.10e-75	235
MsaG043252	MtrunA17_Chr2g0311651	60.753	186	63	6	11	190	19	200	6.11e-74	233
MsaG043252	MtrunA17_Chr2g0311661	63.314	169	55	4	11	173	18	185	2.55e-72	228
MsaG043252	MtrunA17_Chr2g0318101	45.455	209	101	3	16	212	17	224	1.57e-60	199
MsaG043252	MtrunA17_Chr4g0047841	52.273	176	70	2	16	177	17	192	2.16e-60	199
MsaG043252	MtrunA17_Chr4g0076731	51.163	172	72	3	11	182	51	210	4.40e-59	198
MsaG043252	MtrunA17_Chr7g0252971	46.698	212	86	6	16	217	10	204	2.12e-58	193

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043252	AT1G26870.1	60.727	275	89	5	1	263	1	268	3.43e-108	325
MsaG043252	AT5G39820.1	67.980	203	52	4	2	191	8	210	1.22e-98	297
MsaG043252	AT2G43000.1	60.116	173	57	3	8	180	12	172	1.20e-72	228
MsaG043252	AT3G12910.1	56.897	174	68	4	7	174	14	186	4.51e-61	199
MsaG043252	AT2G02450.1	47.087	206	85	5	13	218	50	231	1.33e-59	198
MsaG043252	AT2G02450.2	47.087	206	85	5	13	218	50	231	1.61e-59	199
MsaG043252	AT3G15510.1	42.857	224	107	3	18	239	21	225	4.10e-59	196
MsaG043252	AT1G69490.1	45.813	203	103	4	16	218	11	206	3.20e-58	191
MsaG043252	AT3G04070.2	53.529	170	64	3	16	177	12	174	8.83e-58	192
MsaG043252	AT1G61110.1	53.143	175	71	4	16	182	18	189	2.48e-57	191

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Find 95 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCTCTCTCTCACTCA+TGG	0.486372	8:-41799456	MsaT043252.1:CDS
AAAGTGTAGTACTACTAGAA+GGG	0.579468	8:+41799272	None:intergenic
AAGAGCTCTCTCTCACTCAT+GGG	0.573676	8:-41799455	MsaT043252.1:CDS
AAGGGGTTAAGTGTTGTGTT+AGG	0.408400	8:+41799290	None:intergenic
AAGTGTAGTACTACTAGAAG+GGG	0.613840	8:+41799273	None:intergenic
AATACACTTAGAACCTTCTG+AGG	0.638711	8:+41800475	None:intergenic
ACACGAGACACGTTCGCATT+AGG	0.344052	8:+41798983	None:intergenic
ACACTGAATGGGAATCCAAC+CGG	0.532760	8:+41798929	None:intergenic
ACTACCAAGTGTTATACTTA+GGG	0.437461	8:-41798818	None:intergenic
AGAATACTAAGCCAGTGCTA+AGG	0.618095	8:+41799152	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	41798820	41801426	41798820	ID=MsaG043252
Chr8	mRNA	41798820	41801426	41798820	ID=MsaT043252.1;Parent=MsaG043252
Chr8	exon	41798820	41799527	41798820	ID=MsaT043252.1.exon3;Parent=MsaT043252.1
Chr8	CDS	41798820	41799527	41798820	ID=cds.MsaT043252.1;Parent=MsaT043252.1
Chr8	exon	41800328	41800632	41800328	ID=MsaT043252.1.exon2;Parent=MsaT043252.1
Chr8	CDS	41800328	41800632	41800328	ID=cds.MsaT043252.1;Parent=MsaT043252.1
Chr8	exon	41801246	41801426	41801246	ID=MsaT043252.1.exon1;Parent=MsaT043252.1
Chr8	CDS	41801246	41801426	41801246	ID=cds.MsaT043252.1;Parent=MsaT043252.1

Gene Sequence

>MsaT043252.1

ATGGAAGAGAGAAATGGTTGTGAGAAACTTGAAGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTTGTTGGATTTTACCTAAAGAAAAAGATTCAACAACGCCCTCTTGCTATTGAGCTCATCAAGCAGCTTGATATTTATAAATTTGATCCATGGGATCTACCAAAGTTGGCAAGTACAGGGGAGAAGGAGTGGTATTTTTATTGTCCAAGAGACAGAAAGTACAGGAACAGTGCAAGACCTAATAGGGTAACAAGAGCTGGGTTTTGGAAAGCAACAGGAACAGACAGACCTATTTATTCCTCAGAAGGTTCTAAGTGTATTGGCTTGAAAAAATCCTTAGTTTTCTACAAAGGTAGAGCTGCAAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCATAGATTCATCATCATCTCCAAAGAAATATGTAGACAAGACCATTCCAGCCAATGAATCTTGGGCAATATGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCTCACTCATGGGTCCCACCTTTACTTGAAACATCAACCTCCAATGTTCTAACAAATGATGCAAACCACAACCAATTTTGTTCCTCAAACATGATGATAACAAAGAAACCTAGCTTTGCAAGTCACTCTAGTACTACTAATAATAACCACAATAACCTAACACAACACTTAACCCCTTCTAGTAGTACTACACTTTGTCCCTTAGATGTTCCATCTTATAATAATCCAATTATTGATCCATTGATTTACAAACCCTTATACCGGTTACCAATTTCAAATGATCAAGATCTTAACCTTAGCACTGGCTTAGTATTCTCATCTCCTCTTGAAACATCATGTAACAAAACTTCAATGGATTTTTCTTCTTTGCTATTAGGTATGTCATCTGAAGTAACAACTTCAAACTACATTGGTAATTTACAAGACCATTACAATAATGGGTATCCATTAATGGCTAACATTCCTAATGCGAACGTGTCTCGTGTTGATGATCAACAAGAGTTGGATACGGTTCGACCGGTTGGATTCCCATTCAGTGTACCTCTCAATATTGGTGATGCATGGAAGTCATCAAGTCTTGTTTGGGATACTTCCTCTTGTACTTCTGATGAACCCTCTAGTTATTCTACTACCAAGTGTTATACTTAG

Protein sequence

>MsaT043252.1

MEERNGCEKLEEVMLPGFRFHPTDEELVGFYLKKKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLIDSSSSPKKYVDKTIPANESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLTNDANHNQFCSSNMMITKKPSFASHSSTTNNNHNNLTQHLTPSSSTTLCPLDVPSYNNPIIDPLIYKPLYRLPISNDQDLNLSTGLVFSSPLETSCNKTSMDFSSLLLGMSSEVTTSNYIGNLQDHYNNGYPLMANIPNANVSRVDDQQELDTVRPVGFPFSVPLNIGDAWKSSSLVWDTSSCTSDEPSSYSTTKCYT*