AlfalfaGEDB | MsaG043297

M. sativa ssp. caerulea / MsaG043297

KEGG: K09338
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043565 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	XP_013445749.1	100.000	282	0	0	1	282	1	282	0.0	586

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	sp\|Q8LC03\|ATB13_ARATH	64.189	296	84	8	1	282	7	294	8.44e-119	345

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	tr\|A0A072U1W4\|A0A072U1W4_MEDTR	100.000	282	0	0	1	282	1	282	0.0	586

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TFs/TRs:

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Gene ID	Type	Classification
MsaG043297	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002069	MsaG043297	0.838766	4.355970e-57	1.636107e-54
MsaG002292	MsaG043297	0.801226	1.666597e-48	2.316526e-46
MsaG003214	MsaG043297	0.817703	5.003996e-52	1.036442e-49
MsaG003793	MsaG043297	0.803714	5.148323e-49	7.575851e-47
MsaG004047	MsaG043297	0.853880	3.435381e-61	2.132366e-58
MsaG004715	MsaG043297	0.803395	5.988524e-49	8.747530e-47
MsaG006267	MsaG043297	0.844663	1.231593e-58	5.581231e-56
MsaG007614	MsaG043297	0.848594	1.051670e-59	5.432889e-57
MsaG007744	MsaG043297	0.818260	3.750209e-52	7.880090e-50
MsaG007880	MsaG043297	0.807128	9.984150e-50	1.591237e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	MtrunA17_Chr8g0362151	100.000	282	0	0	1	282	1	282	0.0	586
MsaG043297	MtrunA17_Chr5g0416391	81.818	286	42	6	1	282	4	283	1.33e-150	422
MsaG043297	MtrunA17_Chr6g0453021	50.498	301	98	10	1	279	1	272	1.69e-84	254
MsaG043297	MtrunA17_Chr7g0217111	52.465	284	113	9	1	275	1	271	3.95e-82	248
MsaG043297	MtrunA17_Chr3g0123691	51.656	151	60	4	33	180	26	166	3.66e-39	139
MsaG043297	MtrunA17_Chr6g0450991	64.948	97	34	0	76	172	66	162	6.53e-39	137
MsaG043297	MtrunA17_Chr3g0119291	49.689	161	62	3	64	213	46	198	1.03e-37	134
MsaG043297	MtrunA17_Chr5g0415941	66.667	96	32	0	77	172	87	182	4.74e-37	134
MsaG043297	MtrunA17_Chr4g0060031	58.475	118	46	2	52	169	73	187	9.47e-37	133
MsaG043297	MtrunA17_Chr8g0381741	62.245	98	37	0	75	172	52	149	2.19e-36	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	AT1G69780.1	64.189	296	84	8	1	282	7	294	8.58e-120	345
MsaG043297	AT1G26960.1	55.363	289	81	9	1	282	8	255	5.23e-95	281
MsaG043297	AT3G01220.1	48.057	283	114	9	1	275	16	273	1.07e-74	230
MsaG043297	AT5G15150.1	44.300	307	111	11	1	275	22	300	1.47e-71	223
MsaG043297	AT4G40060.1	57.576	132	52	2	59	186	39	170	4.71e-40	141
MsaG043297	AT5G65310.2	48.824	170	70	4	52	206	19	186	7.52e-40	140
MsaG043297	AT5G65310.1	48.824	170	70	4	52	206	37	204	8.71e-40	141
MsaG043297	AT3G01470.1	48.052	154	65	1	34	172	10	163	6.06e-39	137
MsaG043297	AT2G22430.1	66.667	99	33	0	74	172	59	157	8.64e-39	138
MsaG043297	AT1G27045.1	40.306	196	94	5	8	195	12	192	2.63e-31	116

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Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTTCAGATATCAAGC+TGG	0.622724	8:-42877709	MsaT043297.1:CDS
AAAGTACCATGGTAATCTTG+AGG	0.656226	8:+42879268	None:intergenic
AACCATATTGCAATCTGTCT+TGG	0.512659	8:+42878806	None:intergenic
AACCTTAATAAAGAAACAGA+AGG	0.601474	8:-42877753	MsaT043297.1:CDS
AAGACAATATGATACTATTA+AGG	0.363112	8:-42878723	MsaT043297.1:CDS
AAGTGTTGTTGCTCCAACCA+TGG	0.605144	8:+42877468	None:intergenic
AATATGGTTTCAAAACAGAA+GGG	0.618611	8:-42878792	MsaT043297.1:CDS
AGCCAAGACAGATTGCAATA+TGG	0.402938	8:-42878808	MsaT043297.1:CDS
AGCTGATGAGGAACTCCTGC+TGG	0.491266	8:+42877603	None:intergenic
AGTTAGGGGAGAAGAAGAGA+AGG	0.602528	8:-42878931	MsaT043297.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	42877461	42879389	42877461	ID=MsaG043297
Chr8	mRNA	42877461	42879389	42877461	ID=MsaT043297.1;Parent=MsaG043297
Chr8	exon	42877461	42877814	42877461	ID=MsaT043297.1.exon3;Parent=MsaT043297.1
Chr8	CDS	42877461	42877814	42877461	ID=cds.MsaT043297.1;Parent=MsaT043297.1
Chr8	exon	42878676	42879055	42878676	ID=MsaT043297.1.exon2;Parent=MsaT043297.1
Chr8	CDS	42878676	42879055	42878676	ID=cds.MsaT043297.1;Parent=MsaT043297.1
Chr8	exon	42879275	42879389	42879275	ID=MsaT043297.1.exon1;Parent=MsaT043297.1
Chr8	CDS	42879275	42879389	42879275	ID=cds.MsaT043297.1;Parent=MsaT043297.1

Gene Sequence

>MsaT043297.1

ATGGCGTTCTTTCCAGCAAATTTCATGCTACAAACTTCTCATCAAGATGAACATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCACCTCAAGATTACCATGGAGGAGGAGTATCCTTTTTAGGAAAGAGATCTATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCGAATGTCGAGGAAGAATTATCCGATGATGGATCACAGTTAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTAGCAAGAGCTCTTGGATTGCAGCCAAGACAGATTGCAATATGGTTTCAAAACAGAAGGGCTAGGTGGAAGACAAAACAGTTAGAGAAAGACTATGATGTTCTCAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAATCAAAAACTTCAGACTGAGATATTGGCACTGAAAAATAGAGAACCAACTGAATCAATCAACCTTAATAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGATATCAAGCTGGATATTTCAACAAGGACACAAGCTATTGATAGTCCTTTATCTACTCAACAGACAAGCATAAACCTATTTCCATCTTCTTCAAGACCAGCAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACATTCAGTGTCAAAAAATTGATCACATGGTTAAGGAAGAGAGCTTGAGTAACATGTTTTGTGCCATGGATGATCAATCTGGACTATGGCCATGGTTGGAGCAACAACACTTCAATTAA

Protein sequence

>MsaT043297.1

MAFFPANFMLQTSHQDEHHQPPPSLNSIITSCAPQDYHGGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDTIKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDSPLSTQQTSINLFPSSSRPAGVPHQLFQTNSRQDIQCQKIDHMVKEESLSNMFCAMDDQSGLWPWLEQQHFN*