AlfalfaGEDB | MsaG043297

M. sativa ssp. caerulea / MsaG043297

KEGG: K09338
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043565 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	XP_013445749.1	100.000	282	0	0	1	282	1	282	0.0	586

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	sp\|Q8LC03\|ATB13_ARATH	64.189	296	84	8	1	282	7	294	8.44e-119	345

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	tr\|A0A072U1W4\|A0A072U1W4_MEDTR	100.000	282	0	0	1	282	1	282	0.0	586

TFs/TRs:

Gene ID	Type	Classification
MsaG043297	TF	HB-HD-ZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002069	MsaG043297	0.838766	4.355970e-57	1.636107e-54
MsaG002292	MsaG043297	0.801226	1.666597e-48	2.316526e-46
MsaG003214	MsaG043297	0.817703	5.003996e-52	1.036442e-49
MsaG003793	MsaG043297	0.803714	5.148323e-49	7.575851e-47
MsaG004047	MsaG043297	0.853880	3.435381e-61	2.132366e-58
MsaG004715	MsaG043297	0.803395	5.988524e-49	8.747530e-47
MsaG006267	MsaG043297	0.844663	1.231593e-58	5.581231e-56
MsaG007614	MsaG043297	0.848594	1.051670e-59	5.432889e-57
MsaG007880	MsaG043297	0.807128	9.984150e-50	1.591237e-47
MsaG007744	MsaG043297	0.818260	3.750209e-52	7.880090e-50
MsaG010394	MsaG043297	0.801304	1.606782e-48	2.237367e-46
MsaG011974	MsaG043297	0.833565	8.993714e-56	2.886675e-53
MsaG042126	MsaG043297	0.811940	9.346943e-51	1.673828e-48
MsaG043297	MsaG045452	0.852038	1.149077e-60	6.684344e-58
MsaG043297	MsaG045890	0.801406	1.531593e-48	2.137636e-46
MsaG043297	MsaG046193	0.808008	6.505438e-50	1.058894e-47
MsaG043297	MsaG046367	0.803724	5.123355e-49	7.540944e-47
MsaG043297	MsaG046471	0.817616	5.233769e-52	1.081621e-49
MsaG043297	MsaG046695	0.806246	1.530238e-49	2.388658e-47
MsaG043297	MsaG011676	0.807414	8.687175e-50	1.393978e-47
MsaG043297	MsaG012695	0.802399	9.598365e-49	1.370319e-46
MsaG043297	MsaG019142	0.803288	6.301411e-49	9.181750e-47
MsaG043297	MsaG028289	0.826192	5.524000e-54	1.436169e-51
MsaG043297	MsaG034730	0.825056	1.023689e-53	2.579102e-51
MsaG043297	MsaG032473	0.806514	1.344237e-49	2.111643e-47
MsaG043297	MsaG033344	0.836363	1.787900e-56	6.239070e-54
MsaG013845	MsaG043297	0.800175	2.724942e-48	3.698732e-46
MsaG017058	MsaG043297	0.818330	3.617483e-52	7.614956e-50
MsaG017095	MsaG043297	0.813803	3.669388e-51	6.883206e-49
MsaG017886	MsaG043297	0.844549	1.321091e-58	5.964059e-56
MsaG021668	MsaG043297	0.814222	2.969010e-51	5.628154e-49
MsaG023719	MsaG043297	0.804581	3.404287e-49	5.111082e-47
MsaG025969	MsaG043297	0.854471	2.323152e-61	1.472858e-58
MsaG028044	MsaG043297	0.809895	2.578669e-50	4.392511e-48
MsaG029385	MsaG043297	0.815825	1.313731e-51	2.593181e-49
MsaG029324	MsaG043297	0.803817	4.900984e-49	7.229085e-47
MsaG030327	MsaG043297	0.822681	3.666372e-53	8.659693e-51
MsaG033247	MsaG043297	0.824713	1.232706e-53	3.076529e-51
MsaG035200	MsaG043297	0.807463	8.484587e-50	1.363055e-47
MsaG038016	MsaG043297	0.802717	8.258871e-49	1.187640e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	MtrunA17_Chr8g0362151	100.000	282	0	0	1	282	1	282	0.0	586
MsaG043297	MtrunA17_Chr5g0416391	81.818	286	42	6	1	282	4	283	1.33e-150	422
MsaG043297	MtrunA17_Chr6g0453021	50.498	301	98	10	1	279	1	272	1.69e-84	254
MsaG043297	MtrunA17_Chr7g0217111	52.465	284	113	9	1	275	1	271	3.95e-82	248
MsaG043297	MtrunA17_Chr3g0123691	51.656	151	60	4	33	180	26	166	3.66e-39	139
MsaG043297	MtrunA17_Chr6g0450991	64.948	97	34	0	76	172	66	162	6.53e-39	137
MsaG043297	MtrunA17_Chr3g0119291	49.689	161	62	3	64	213	46	198	1.03e-37	134
MsaG043297	MtrunA17_Chr5g0415941	66.667	96	32	0	77	172	87	182	4.74e-37	134
MsaG043297	MtrunA17_Chr4g0060031	58.475	118	46	2	52	169	73	187	9.47e-37	133
MsaG043297	MtrunA17_Chr8g0381741	62.245	98	37	0	75	172	52	149	2.19e-36	132
MsaG043297	MtrunA17_Chr8g0362751	65.625	96	33	0	77	172	89	184	3.70e-36	130
MsaG043297	MtrunA17_Chr7g0265521	45.652	138	59	2	44	172	21	151	5.79e-33	120
MsaG043297	MtrunA17_Chr1g0179581	56.522	92	38	1	65	156	18	107	1.03e-27	103
MsaG043297	MtrunA17_Chr3g0127511	53.846	91	42	0	79	169	40	130	3.88e-27	105
MsaG043297	MtrunA17_Chr8g0346251	38.000	150	82	3	84	222	48	197	4.85e-25	100
MsaG043297	MtrunA17_Chr4g0055851	40.496	121	69	1	43	163	89	206	5.94e-21	90.1
MsaG043297	MtrunA17_Chr5g0403691	46.809	94	50	0	77	170	53	146	2.30e-19	84.3
MsaG043297	MtrunA17_Chr5g0403701	47.778	90	47	0	77	166	53	142	2.34e-19	84.0
MsaG043297	MtrunA17_Chr5g0399491	41.463	123	70	2	43	163	100	222	7.10e-19	84.3
MsaG043297	MtrunA17_Chr4g0054421	45.263	95	52	0	69	163	119	213	8.27e-19	84.0
MsaG043297	MtrunA17_Chr7g0258831	46.939	98	48	1	77	174	160	253	3.29e-18	82.8
MsaG043297	MtrunA17_Chr5g0400781	44.000	100	56	0	69	168	115	214	3.74e-18	82.0
MsaG043297	MtrunA17_Chr1g0175651	42.609	115	62	1	60	174	137	247	4.34e-18	82.4
MsaG043297	MtrunA17_Chr2g0308611	39.669	121	69	1	54	174	177	293	1.64e-17	81.3
MsaG043297	MtrunA17_Chr8g0335131	46.739	92	49	0	77	168	146	237	2.28e-17	80.5
MsaG043297	MtrunA17_Chr4g0071411	45.882	85	46	0	80	164	91	175	6.05e-17	77.8
MsaG043297	MtrunA17_Chr1g0151971	45.455	88	48	0	77	164	130	217	1.11e-16	78.2
MsaG043297	MtrunA17_Chr4g0044091	43.434	99	52	1	77	175	65	159	2.40e-15	72.8
MsaG043297	MtrunA17_Chr3g0135331	48.611	72	37	0	77	148	145	216	4.26e-14	71.2
MsaG043297	MtrunA17_Chr2g0299031	37.615	109	64	2	59	163	60	168	9.34e-12	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043297	AT1G69780.1	64.189	296	84	8	1	282	7	294	8.58e-120	345
MsaG043297	AT1G26960.1	55.363	289	81	9	1	282	8	255	5.23e-95	281
MsaG043297	AT3G01220.1	48.057	283	114	9	1	275	16	273	1.07e-74	230
MsaG043297	AT5G15150.1	44.300	307	111	11	1	275	22	300	1.47e-71	223
MsaG043297	AT4G40060.1	57.576	132	52	2	59	186	39	170	4.71e-40	141
MsaG043297	AT5G65310.2	48.824	170	70	4	52	206	19	186	7.52e-40	140
MsaG043297	AT5G65310.1	48.824	170	70	4	52	206	37	204	8.71e-40	141
MsaG043297	AT3G01470.1	48.052	154	65	1	34	172	10	163	6.06e-39	137
MsaG043297	AT2G22430.1	66.667	99	33	0	74	172	59	157	8.64e-39	138
MsaG043297	AT1G27045.1	40.306	196	94	5	8	195	12	192	2.63e-31	116
MsaG043297	AT1G27045.4	42.857	161	75	4	8	166	12	157	1.64e-29	112
MsaG043297	AT1G27045.2	48.800	125	58	1	77	195	17	141	4.02e-28	107
MsaG043297	AT1G27045.5	48.800	125	58	1	77	195	25	149	4.60e-28	107
MsaG043297	AT1G27045.3	48.800	125	58	1	77	195	25	149	4.60e-28	107
MsaG043297	AT2G46680.1	52.688	93	44	0	78	170	33	125	8.27e-28	108
MsaG043297	AT2G46680.2	53.333	90	42	0	78	167	33	122	4.57e-27	106
MsaG043297	AT3G61890.1	51.111	90	44	0	80	169	33	122	1.28e-25	102
MsaG043297	AT5G03790.1	52.273	88	42	0	77	164	77	164	1.58e-24	99.0
MsaG043297	AT5G03790.2	55.000	80	36	0	77	156	77	156	1.49e-23	95.5
MsaG043297	AT2G18550.1	46.341	123	56	3	77	196	61	176	1.65e-22	93.2
MsaG043297	AT2G36610.1	43.590	117	51	3	58	166	59	168	1.95e-22	92.0
MsaG043297	AT4G36740.1	48.544	103	46	1	68	170	46	141	6.98e-22	91.3
MsaG043297	AT4G36740.2	48.544	103	46	1	68	170	47	142	7.50e-22	91.3
MsaG043297	AT5G66700.1	45.378	119	56	2	61	172	57	173	3.41e-21	89.7
MsaG043297	AT5G53980.1	44.554	101	56	0	72	172	6	106	1.04e-20	86.7
MsaG043297	AT2G01430.1	43.396	106	60	0	58	163	120	225	5.02e-18	82.0
MsaG043297	AT5G47370.1	42.708	96	55	0	69	164	122	217	2.26e-17	80.5
MsaG043297	AT4G37790.1	41.228	114	63	1	61	174	110	219	3.87e-17	79.7
MsaG043297	AT2G22800.1	46.667	90	48	0	75	164	111	200	4.95e-17	79.3
MsaG043297	AT5G06710.1	43.434	99	56	0	66	164	179	277	8.23e-17	79.7
MsaG043297	AT4G17460.1	41.414	99	58	0	65	163	123	221	1.18e-16	78.6
MsaG043297	AT3G60390.1	42.991	107	57	1	64	170	149	251	1.62e-16	78.6
MsaG043297	AT2G44910.1	44.681	94	48	1	77	170	163	252	5.28e-15	74.3
MsaG043297	AT4G16780.1	42.157	102	55	1	69	170	121	218	8.91e-15	73.2
MsaG043297	AT1G70920.1	37.903	124	69	2	57	180	50	165	9.54e-15	71.6
MsaG043297	AT1G70920.2	37.903	124	69	2	57	180	20	135	1.71e-14	70.5
MsaG043297	AT2G01430.2	50.704	71	35	0	59	129	121	191	2.56e-13	67.8

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCCTTCTGTTTCTTTATTA+AGG	0.139873	8:+42877751	None:intergenic
CATAGATCTCTTTCCTAAAA+AGG	0.254932	8:+42879021	None:intergenic
CTGAATGTCTTGTCTTGAAT+TGG	0.288821	8:+42877572	None:intergenic
AAGACAATATGATACTATTA+AGG	0.363112	8:-42878723	MsaT043297.1:CDS
GTTTGTAGCATGAAATTTGC+TGG	0.365160	8:+42879355	None:intergenic
TCCGATGATGGATCACAGTT+AGG	0.393627	8:-42878947	MsaT043297.1:CDS
GTCTTGAAGAAGATGGAAAT+AGG	0.399749	8:+42877625	None:intergenic
AGCCAAGACAGATTGCAATA+TGG	0.402938	8:-42878808	MsaT043297.1:CDS
ATGCAGCTAGCAAGAGCTCT+TGG	0.439885	8:-42878836	MsaT043297.1:CDS
TGGATGATCAATCTGGACTA+TGG	0.444127	8:-42877491	MsaT043297.1:CDS
CCATCTTCTTCAAGACCAGC+AGG	0.460199	8:-42877618	MsaT043297.1:CDS
CCGATGATGGATCACAGTTA+GGG	0.466027	8:-42878946	MsaT043297.1:CDS
CTTGTCTGTTGAGTAGATAA+AGG	0.476490	8:+42877654	None:intergenic
AGCTGATGAGGAACTCCTGC+TGG	0.491266	8:+42877603	None:intergenic
TGTGCCATGGATGATCAATC+TGG	0.494499	8:-42877498	MsaT043297.1:CDS
CAATATGGTTTCAAAACAGA+AGG	0.502644	8:-42878793	MsaT043297.1:CDS
ATAATTGAGTTGAGTGAAGG+TGG	0.507171	8:+42879304	None:intergenic
AACCATATTGCAATCTGTCT+TGG	0.512659	8:+42878806	None:intergenic
CCTGCTGGTCTTGAAGAAGA+TGG	0.521993	8:+42877618	None:intergenic
ATCTGGACTATGGCCATGGT+TGG	0.522424	8:-42877481	MsaT043297.1:CDS
TTAAGGTTGATTGATTCAGT+TGG	0.542418	8:+42877768	None:intergenic
CCCTAACTGTGATCCATCAT+CGG	0.548112	8:+42878946	None:intergenic
GAGGAAGAATTATCCGATGA+TGG	0.563562	8:-42878959	MsaT043297.1:CDS
GGTTTCAAAACAGAAGGGCT+AGG	0.568856	8:-42878787	MsaT043297.1:CDS
TAGTCCAGATTGATCATCCA+TGG	0.576768	8:+42877494	None:intergenic
TTGGTTTGAAAGAGCTGATG+AGG	0.592238	8:+42877591	None:intergenic
AACCTTAATAAAGAAACAGA+AGG	0.601474	8:-42877753	MsaT043297.1:CDS
GTTATAATTGAGTTGAGTGA+AGG	0.601931	8:+42879301	None:intergenic
AGTTAGGGGAGAAGAAGAGA+AGG	0.602528	8:-42878931	MsaT043297.1:CDS
AAGTGTTGTTGCTCCAACCA+TGG	0.605144	8:+42877468	None:intergenic
GAAGAAGAGAAGGCTTAACA+TGG	0.612268	8:-42878921	MsaT043297.1:CDS
ATCAATCTGGACTATGGCCA+TGG	0.615676	8:-42877485	MsaT043297.1:CDS
AATATGGTTTCAAAACAGAA+GGG	0.618611	8:-42878792	MsaT043297.1:CDS
ATTGAGTTGAGTGAAGGTGG+AGG	0.620969	8:+42879307	None:intergenic
AAACAGTTCAGATATCAAGC+TGG	0.622724	8:-42877709	MsaT043297.1:CDS
GTAATCTTGAGGTGCACATG+AGG	0.639812	8:+42879279	None:intergenic
GAAACAAGCTTGAACCTGAG+AGG	0.652955	8:-42878862	MsaT043297.1:CDS
AAAGTACCATGGTAATCTTG+AGG	0.656226	8:+42879268	None:intergenic
TGGAGAAGAAGCGAATGTCG+AGG	0.659383	8:-42878978	MsaT043297.1:CDS
CGATGATGGATCACAGTTAG+GGG	0.661316	8:-42878945	MsaT043297.1:CDS
TTCAAAACAGAAGGGCTAGG+TGG	0.663747	8:-42878784	MsaT043297.1:CDS
TGTGCACCTCAAGATTACCA+TGG	0.714676	8:-42879274	MsaT043297.1:intron
TCAAGCTGGATATTTCAACA+AGG	0.727961	8:-42877695	MsaT043297.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	42877461	42879389	42877461	ID=MsaG043297
Chr8	mRNA	42877461	42879389	42877461	ID=MsaT043297.1;Parent=MsaG043297
Chr8	exon	42877461	42877814	42877461	ID=MsaT043297.1.exon3;Parent=MsaT043297.1
Chr8	CDS	42877461	42877814	42877461	ID=cds.MsaT043297.1;Parent=MsaT043297.1
Chr8	exon	42878676	42879055	42878676	ID=MsaT043297.1.exon2;Parent=MsaT043297.1
Chr8	CDS	42878676	42879055	42878676	ID=cds.MsaT043297.1;Parent=MsaT043297.1
Chr8	exon	42879275	42879389	42879275	ID=MsaT043297.1.exon1;Parent=MsaT043297.1
Chr8	CDS	42879275	42879389	42879275	ID=cds.MsaT043297.1;Parent=MsaT043297.1

Gene Sequence

>MsaT043297.1

ATGGCGTTCTTTCCAGCAAATTTCATGCTACAAACTTCTCATCAAGATGAACATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCACCTCAAGATTACCATGGAGGAGGAGTATCCTTTTTAGGAAAGAGATCTATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCGAATGTCGAGGAAGAATTATCCGATGATGGATCACAGTTAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTAGCAAGAGCTCTTGGATTGCAGCCAAGACAGATTGCAATATGGTTTCAAAACAGAAGGGCTAGGTGGAAGACAAAACAGTTAGAGAAAGACTATGATGTTCTCAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAATCAAAAACTTCAGACTGAGATATTGGCACTGAAAAATAGAGAACCAACTGAATCAATCAACCTTAATAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGATATCAAGCTGGATATTTCAACAAGGACACAAGCTATTGATAGTCCTTTATCTACTCAACAGACAAGCATAAACCTATTTCCATCTTCTTCAAGACCAGCAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACATTCAGTGTCAAAAAATTGATCACATGGTTAAGGAAGAGAGCTTGAGTAACATGTTTTGTGCCATGGATGATCAATCTGGACTATGGCCATGGTTGGAGCAACAACACTTCAATTAA

Protein sequence

>MsaT043297.1

MAFFPANFMLQTSHQDEHHQPPPSLNSIITSCAPQDYHGGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDTIKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDSPLSTQQTSINLFPSSSRPAGVPHQLFQTNSRQDIQCQKIDHMVKEESLSNMFCAMDDQSGLWPWLEQQHFN*