AlfalfaGEDB | MsaG043315

M. sativa ssp. caerulea / MsaG043315

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043315	XP_013445764.1	98.812	421	5	0	1	421	301	721	0.0	858

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043315	sp\|Q9M9S4\|Y1143_ARATH	50.572	437	174	12	7	417	301	721	9.19e-127	385

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043315	tr\|A0A072U1Y6\|A0A072U1Y6_MEDTR	98.812	421	5	0	1	421	301	721	0.0	858

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG043081	MsaG043315	0.869969	4.225410e-66	4.890973e-63

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043315	MtrunA17_Chr8g0362301	98.812	421	5	0	1	421	301	721	0.0	858
MsaG043315	MtrunA17_Chr5g0416151	61.512	291	102	5	7	292	268	553	1.77e-102	315
MsaG043315	MtrunA17_Chr6g0460961	40.380	421	229	8	7	411	348	762	3.56e-100	315
MsaG043315	MtrunA17_Chr7g0253951	41.981	424	218	9	7	411	337	751	1.13e-99	314
MsaG043315	MtrunA17_Chr8g0355271	41.509	318	176	6	100	411	507	820	2.06e-77	256
MsaG043315	MtrunA17_Chr7g0226051	33.816	414	248	7	7	408	359	758	2.62e-67	228
MsaG043315	MtrunA17_Chr6g0459201	33.575	414	257	7	2	408	358	760	2.59e-64	220
MsaG043315	MtrunA17_Chr3g0116231	34.063	411	242	8	11	410	362	754	6.51e-63	216
MsaG043315	MtrunA17_Chr8g0352381	35.161	310	168	6	120	412	518	811	7.71e-46	169
MsaG043315	MtrunA17_Chr6g0468691	29.973	377	238	5	51	410	409	776	8.12e-45	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043315	AT1G14390.1	50.572	437	174	12	7	417	301	721	9.34e-128	385
MsaG043315	AT2G02780.1	50.340	441	186	11	3	416	298	732	4.03e-120	366
MsaG043315	AT3G03770.2	39.813	427	239	7	7	421	348	768	4.90e-98	310
MsaG043315	AT3G03770.3	39.813	427	239	7	7	421	348	768	4.90e-98	310
MsaG043315	AT3G03770.1	39.813	427	239	7	7	421	348	768	4.90e-98	310
MsaG043315	AT2G02780.3	48.493	365	157	9	3	341	298	657	2.30e-87	280
MsaG043315	AT2G02780.2	48.598	321	136	7	3	298	298	614	5.12e-76	248
MsaG043315	AT5G14210.1	33.172	413	249	5	11	408	362	762	1.21e-64	221
MsaG043315	AT5G63410.1	32.542	421	248	10	9	408	267	672	5.08e-62	213
MsaG043315	AT5G14210.2	31.306	444	247	7	11	408	362	793	1.50e-58	205

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Find 78 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGATATGCTGAAA+TGG	0.439784	8:+43228336	MsaT043315.1:CDS
AAAGATGATATTTATCAGCT+AGG	0.507327	8:+43228767	MsaT043315.1:CDS
AAATTGTTGCCAAATATTCC+AGG	0.425805	8:-43228425	None:intergenic
AAATTTGAGGCATAGACATA+TGG	0.512080	8:+43228017	MsaT043315.1:CDS
AACCATCAATTGTCTCTCTA+AGG	0.289045	8:+43229470	MsaT043315.1:CDS
AACCTTAGAGAGACAATTGA+TGG	0.389723	8:-43229472	None:intergenic
AAGACTGTGCTTGTTACTTG+AGG	0.616865	8:-43228081	None:intergenic
AAGAGAATTGGACCAGCAGT+GGG	0.613884	8:+43229556	MsaT043315.1:CDS
AAGGAATCAAGTATGAAATT+AGG	0.321319	8:+43226830	MsaT043315.1:CDS
AAGGGTAAAGTATTGTATTC+TGG	0.214301	8:+43226716	MsaT043315.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	43226707	43229599	43226707	ID=MsaG043315
Chr8	mRNA	43226707	43229599	43226707	ID=MsaT043315.1;Parent=MsaG043315
Chr8	exon	43226707	43227010	43226707	ID=MsaT043315.1.exon1;Parent=MsaT043315.1
Chr8	CDS	43226707	43227010	43226707	ID=cds.MsaT043315.1;Parent=MsaT043315.1
Chr8	exon	43227675	43227808	43227675	ID=MsaT043315.1.exon2;Parent=MsaT043315.1
Chr8	CDS	43227675	43227808	43227675	ID=cds.MsaT043315.1;Parent=MsaT043315.1
Chr8	exon	43227910	43228153	43227910	ID=MsaT043315.1.exon3;Parent=MsaT043315.1
Chr8	CDS	43227910	43228153	43227910	ID=cds.MsaT043315.1;Parent=MsaT043315.1
Chr8	exon	43228330	43228523	43228330	ID=MsaT043315.1.exon4;Parent=MsaT043315.1
Chr8	CDS	43228330	43228523	43228330	ID=cds.MsaT043315.1;Parent=MsaT043315.1
Chr8	exon	43228624	43228664	43228624	ID=MsaT043315.1.exon5;Parent=MsaT043315.1
Chr8	CDS	43228624	43228664	43228624	ID=cds.MsaT043315.1;Parent=MsaT043315.1
Chr8	exon	43228751	43228862	43228751	ID=MsaT043315.1.exon6;Parent=MsaT043315.1
Chr8	CDS	43228751	43228862	43228751	ID=cds.MsaT043315.1;Parent=MsaT043315.1
Chr8	exon	43229363	43229599	43229363	ID=MsaT043315.1.exon7;Parent=MsaT043315.1
Chr8	CDS	43229363	43229599	43229363	ID=cds.MsaT043315.1;Parent=MsaT043315.1

Gene Sequence

>MsaT043315.1

ATGAATTCAAAGGGTAAAGTATTGTATTCTGGGAATTGTTTATCAACAAGAAATCAACATGCATCTTCATATTGCAAAAAAGATGCAGCTTTAGCTGTAAAACCTCCTAAAAGAAAAGTGAAGAAGGAATCAAGTATGAAATTAGGACTTGTGCTTGTTATTGTTGGAGGTGTTGTTGGAGTTGCATGTGTTTTGGCTTTGCTTATTGTGTTCATCTTGTGGAAATCAAAACCAGAAAGATTGAATCATAATATGGATAGATCTTCTGCTCATAAGTTTTCAGATAAACCAAATTTGAATGCAAGACATGTTCCTCAAACAATGAGGCTAGCTACACATGGACAGCCACCATACAATATTTTCACAGAAGAAGAAATTGAAGATGCAACCAATAACTTTGACCAATCAAATCTAATAGGAGAAGGATCACAAGGACAGATATATAAAGGTTCGTTGAGGGATGGTTCATTGGTCCTAATTAATTGTATAAAAATAAAGCAAAAGGGTTTACCACATAGCATTATGCAGCACTTAGATGCATTACAAAATTTGAGGCATAGACATATGGTAAGTGTTCTAGGACATTGTGTCATTACTCATCAGGACCCTCCTCAAGTAACAAGCACAGTCTTCATTGTACTTGAATACATCTCTAATGTGTCATTGAGGGATCAACTTACAGATGGGAAAAAGAAGGATATGCTGAAATGGCCACAAAGAATGGCGATCAGCATAGGAATTGCAAGAGGGGTTCAGTTCTTACACACAGGAGTTGCTCCTGGAATATTTGGCAACAATTTCAAGATTGAGAATATTTTGTTGGATGATAGTCTTAATGCAAAAGTTAGTGGATACAGAATTCCATTGCCATCTAAGAGCACAGTTAATGAACCAAGTTCCGCGAATCAAAATGGAAGCACAAACTATGCAGAAAAAGATGATATTTATCAGCTAGGTGTTATTCTACTTGAAGTTATTACTGGTAGACAAATTGCTTCCTCCAGTGAAGTAGAGCAGCTCAAGGATGAGCTGGAAAGAGGTTCATCAGAAGCACCATCACAAATACTAAGAAGTGCAATTGATCCTTCTCTACGTGGGAGTTATGCATATGAATCAATGAGCACTGCAGTTCAAATAACCATCAATTGTCTCTCTAAGGTTTCAAGTAAACGTCCTTCAATAGAGGATGTTCTATGGAATTTACAGTATTCAATGCAAGTTCAAGAGAATTGGACCAGCAGTGGGAACCTCAGCACAAAATTTTAA

Protein sequence

>MsaT043315.1

MNSKGKVLYSGNCLSTRNQHASSYCKKDAALAVKPPKRKVKKESSMKLGLVLVIVGGVVGVACVLALLIVFILWKSKPERLNHNMDRSSAHKFSDKPNLNARHVPQTMRLATHGQPPYNIFTEEEIEDATNNFDQSNLIGEGSQGQIYKGSLRDGSLVLINCIKIKQKGLPHSIMQHLDALQNLRHRHMVSVLGHCVITHQDPPQVTSTVFIVLEYISNVSLRDQLTDGKKKDMLKWPQRMAISIGIARGVQFLHTGVAPGIFGNNFKIENILLDDSLNAKVSGYRIPLPSKSTVNEPSSANQNGSTNYAEKDDIYQLGVILLEVITGRQIASSSEVEQLKDELERGSSEAPSQILRSAIDPSLRGSYAYESMSTAVQITINCLSKVSSKRPSIEDVLWNLQYSMQVQENWTSSGNLSTKF*