AlfalfaGEDB | MsaG043317

M. sativa ssp. caerulea / MsaG043317

KEGG: -
GO: GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251
PFAM: PF08536.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043317	XP_013445767.1	92.821	195	10	1	6	196	73	267	4.87e-124	361

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043317	sp\|Q9M9S3\|WHY1_ARATH	71.123	187	54	0	10	196	77	263	1.37e-100	294

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043317	tr\|A0A072TSF9\|A0A072TSF9_MEDTR	92.821	195	10	1	6	196	73	267	2.33e-124	361

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TFs/TRs:

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Gene ID	Type	Classification
MsaG043317	TF	Whirly

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043317	MtrunA17_Chr8g0362331	92.821	195	10	1	6	196	73	267	4.48e-128	361
MsaG043317	MtrunA17_Chr5g0416091	62.827	191	66	2	7	196	75	261	6.75e-84	249
MsaG043317	MtrunA17_Chr7g0274781	36.364	198	117	3	2	196	35	226	7.27e-48	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043317	AT1G14410.1	71.123	187	54	0	10	196	77	263	1.39e-101	294
MsaG043317	AT2G02740.1	69.892	186	55	1	12	196	83	268	7.06e-96	280
MsaG043317	AT1G71260.1	43.293	164	93	0	13	176	53	216	6.42e-51	164

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Find 57 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGAACCATCCGGAAA+AGG	0.498684	8:+43251553	None:intergenic
AAATCCGGAGTATTCCGCAG+CGG	0.752636	8:-43250255	MsaT043317.1:CDS
AACAATGCTAATCCAAGATA+TGG	0.413675	8:-43250230	MsaT043317.1:CDS
AACTACCTTCCGCCTTTGAA+AGG	0.515428	8:+43252132	None:intergenic
AATGCTAATCCAAGATATGG+TGG	0.607036	8:-43250227	MsaT043317.1:CDS
ACATCCAAAGGCGCAAATTC+CGG	0.383906	8:+43253404	None:intergenic
ACCACCGGAATTTGCGCCTT+TGG	0.304072	8:-43253408	MsaT043317.1:CDS
ACGCTTATACTTACATCCAA+AGG	0.634632	8:+43253392	None:intergenic
ACTATGGATAATGAAATTGT+TGG	0.577127	8:-43253590	MsaT043317.1:intron
AGACTACGAATGGAACAGAT+AGG	0.502738	8:-43250204	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	43250205	43253609	43250205	ID=MsaG043317
Chr8	mRNA	43250205	43253609	43250205	ID=MsaT043317.1;Parent=MsaG043317
Chr8	exon	43250205	43250324	43250205	ID=MsaT043317.1.exon7;Parent=MsaT043317.1
Chr8	CDS	43250205	43250324	43250205	ID=cds.MsaT043317.1;Parent=MsaT043317.1
Chr8	exon	43250984	43251072	43250984	ID=MsaT043317.1.exon6;Parent=MsaT043317.1
Chr8	CDS	43250984	43251072	43250984	ID=cds.MsaT043317.1;Parent=MsaT043317.1
Chr8	exon	43251539	43251612	43251539	ID=MsaT043317.1.exon5;Parent=MsaT043317.1
Chr8	CDS	43251539	43251612	43251539	ID=cds.MsaT043317.1;Parent=MsaT043317.1
Chr8	exon	43252138	43252232	43252138	ID=MsaT043317.1.exon4;Parent=MsaT043317.1
Chr8	CDS	43252138	43252232	43252138	ID=cds.MsaT043317.1;Parent=MsaT043317.1
Chr8	exon	43252810	43252902	43252810	ID=MsaT043317.1.exon3;Parent=MsaT043317.1
Chr8	CDS	43252810	43252902	43252810	ID=cds.MsaT043317.1;Parent=MsaT043317.1
Chr8	exon	43253406	43253506	43253406	ID=MsaT043317.1.exon2;Parent=MsaT043317.1
Chr8	CDS	43253406	43253506	43253406	ID=cds.MsaT043317.1;Parent=MsaT043317.1
Chr8	exon	43253591	43253609	43253591	ID=MsaT043317.1.exon1;Parent=MsaT043317.1
Chr8	CDS	43253591	43253609	43253591	ID=cds.MsaT043317.1;Parent=MsaT043317.1

Gene Sequence

>MsaT043317.1

ATGGATAATGAAATTGTTGTTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCATTCCATTTACAAAGGGAAGGCTGCTCTCACTATCACTCCTAGACCACCGGAATTTGCGCCTTTGGATTCAGGGGCATACAAGATATCTAGGGATGGTTGTTTGCTGCTTCAGTTTGCGCCCTCTGTTGGTCCACGTCAATATGATTGGAATAGAAAACAGCTGTTCATGTTATCTGTGGATGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTCAAAGGCGGAAGTGATGAAGGCAAAGTCAGAAAGGTTTTGAAGATTGAGCCTTTTCCGGATGGTTCTGGTTTCTTTTTTAACCTCAGTGTTCAAGACAAAACTGCGAACGTGGATGTAAGCATGAATATCCCTGTATCTAAAGCAGAGTTATCGGTTCTACGCTCAATTTTCAAGTATATCATGCCATACCTTCTAGGTTGGCATACCTTTGCAAACTCCATAAATCCGGAGTATTCCGCAGCGGCGAACAATGCTAATCCAAGATATGGTGGAGACTACGAATGGAACAGATAG

Protein sequence

>MsaT043317.1

MDNEIVVGALPPRVYVGHSIYKGKAALTITPRPPEFAPLDSGAYKISRDGCLLLQFAPSVGPRQYDWNRKQLFMLSVDEMGSVISLGARESCEFFHDPFKGGSDEGKVRKVLKIEPFPDGSGFFFNLSVQDKTANVDVSMNIPVSKAELSVLRSIFKYIMPYLLGWHTFANSINPEYSAAANNANPRYGGDYEWNR*