AlfalfaGEDB | MsaG043385

M. sativa ssp. caerulea / MsaG043385

KEGG: -
GO: -
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043385	XP_039685024.1	27.845	413	234	9	961	1343	79	457	1.17e-21	115
MsaG043385	XP_039685024.1	29.854	412	253	10	932	1313	74	479	1.19e-23	122
MsaG043385	XP_039685024.1	30.837	227	153	2	293	518	62	285	3.28e-14	91.7
MsaG043385	XP_039685024.1	31.176	170	117	0	369	538	63	232	9.72e-11	80.1
MsaG043385	XP_039685024.1	31.278	227	153	2	1090	1315	62	286	1.44e-15	95.9
MsaG043385	XP_039685024.1	31.719	413	245	11	135	517	74	479	2.10e-25	127
MsaG043385	XP_039685024.1	82.105	665	105	1	919	1569	205	869	0.0	1088
MsaG043385	XP_039685024.1	87.140	902	115	1	1	902	84	984	0.0	1572

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043385	sp\|C0LGP4\|Y3475_ARATH	37.673	937	546	16	1	904	76	1007	0.0	589
MsaG043385	sp\|C0LGP4\|Y3475_ARATH	36.155	697	394	15	920	1569	198	890	1.96e-109	376
MsaG043385	sp\|C0LGP4\|Y3475_ARATH	30.024	413	228	7	933	1313	67	450	2.46e-33	144
MsaG043385	sp\|C0LGP4\|Y3475_ARATH	26.478	389	199	8	186	517	68	426	3.12e-22	108
MsaG043385	sp\|C0LGP4\|Y3475_ARATH	29.796	245	170	2	1092	1335	78	321	3.65e-21	104
MsaG043385	sp\|C0LGP4\|Y3475_ARATH	32.105	190	128	1	332	520	66	255	7.31e-18	94.0
MsaG043385	sp\|C0LGP4\|Y3475_ARATH	31.606	193	128	3	1125	1316	66	255	1.44e-17	93.2
MsaG043385	sp\|C0LGP4\|Y3475_ARATH	34.028	144	95	0	374	517	60	203	2.00e-14	82.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043385	tr\|A0A396GJ77\|A0A396GJ77_MEDTR	28.058	278	169	5	1092	1341	86	360	3.72e-13	87.0
MsaG043385	tr\|A0A396GJ77\|A0A396GJ77_MEDTR	33.793	145	96	0	374	518	68	212	4.37e-11	80.1
MsaG043385	tr\|A0A396GJ77\|A0A396GJ77_MEDTR	33.846	195	125	1	1108	1298	78	272	1.12e-16	98.6
MsaG043385	tr\|A0A396GJ77\|A0A396GJ77_MEDTR	34.737	190	120	1	317	502	83	272	2.31e-19	107
MsaG043385	tr\|A0A396GJ77\|A0A396GJ77_MEDTR	83.609	665	95	1	919	1569	205	869	0.0	1101
MsaG043385	tr\|A0A396GJ77\|A0A396GJ77_MEDTR	85.683	901	128	1	1	901	84	983	0.0	1546

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043385	MtrunA17_Chr8g0363061	85.683	901	128	1	1	901	84	983	0.0	1546
MsaG043385	MtrunA17_Chr8g0363061	83.609	665	95	1	919	1569	205	869	0.0	1101
MsaG043385	MtrunA17_Chr8g0363061	34.737	190	120	1	317	502	83	272	4.44e-23	107
MsaG043385	MtrunA17_Chr8g0363061	33.846	195	125	1	1108	1298	78	272	2.15e-20	98.6
MsaG043385	MtrunA17_Chr8g0363061	28.058	278	169	5	1092	1341	86	360	7.16e-17	87.0
MsaG043385	MtrunA17_Chr8g0363061	33.793	145	96	0	374	518	68	212	8.42e-15	80.1
MsaG043385	MtrunA17_Chr8g0363061	31.847	157	107	0	1157	1313	79	235	6.52e-13	73.9
MsaG043385	MtrunA17_Chr8g0363691	81.419	888	161	4	17	902	367	1252	0.0	1434
MsaG043385	MtrunA17_Chr8g0363691	84.211	665	91	1	919	1569	473	1137	0.0	1111
MsaG043385	MtrunA17_Chr8g0363691	35.826	642	303	10	1	538	84	720	2.08e-81	294

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043385	AT3G47570.1	37.673	937	546	16	1	904	76	1007	0.0	589
MsaG043385	AT3G47570.1	36.155	697	394	15	920	1569	198	890	2.00e-110	376
MsaG043385	AT3G47570.1	30.024	413	228	7	933	1313	67	450	2.50e-34	144
MsaG043385	AT3G47570.1	26.478	389	199	8	186	517	68	426	3.17e-23	108
MsaG043385	AT3G47570.1	29.796	245	170	2	1092	1335	78	321	3.71e-22	104
MsaG043385	AT3G47570.1	32.105	190	128	1	332	520	66	255	7.43e-19	94.0
MsaG043385	AT3G47570.1	31.606	193	128	3	1125	1316	66	255	1.46e-18	93.2
MsaG043385	AT3G47570.1	34.028	144	95	0	374	517	60	203	2.04e-15	82.8
MsaG043385	AT5G20480.1	35.313	943	556	17	3	908	85	1010	3.16e-167	533
MsaG043385	AT5G20480.1	34.907	699	399	15	922	1569	207	900	1.46e-102	354

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Find 311 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAGTTAGAAGATAAA+TGG	0.305123	8:+44794261	None:intergenic
AAAAGTGATTCTAAGGATTT+TGG	0.118040	8:+44757164	None:intergenic
AAAAGTGATTCTAAGGATTT+TGG	0.118040	8:+44761007	None:intergenic
AAAATATCTACAATTTGTTA+AGG	0.408062	8:+44761717	None:intergenic
AAAATCAAGACTTTGGTTGT+TGG	0.397356	8:-44755819	MsaT043385.1:CDS
AAAATGGCTGACACAACTAT+GGG	0.640102	8:+44756942	None:intergenic
AAACTTCAGTATTTGGATCT+TGG	0.311977	8:-44761487	MsaT043385.1:CDS
AAAGCCTTCCAATGTCTTAT+TGG	0.199164	8:-44756413	MsaT043385.1:CDS
AAAGCCTTCTAATGTCTTAT+TGG	0.183487	8:-44760255	MsaT043385.1:CDS
AAAGGAGATGTGTACAGCTA+TGG	0.488688	8:-44759937	MsaT043385.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	44755803	44794630	44755803	ID=MsaG043385
Chr8	mRNA	44755803	44794630	44755803	ID=MsaT043385.1;Parent=MsaG043385
Chr8	exon	44755803	44755909	44755803	ID=MsaT043385.1.exon8;Parent=MsaT043385.1
Chr8	CDS	44755803	44755909	44755803	ID=cds.MsaT043385.1;Parent=MsaT043385.1
Chr8	exon	44756302	44756584	44756302	ID=MsaT043385.1.exon7;Parent=MsaT043385.1
Chr8	CDS	44756302	44756584	44756302	ID=cds.MsaT043385.1;Parent=MsaT043385.1
Chr8	exon	44756626	44758286	44756626	ID=MsaT043385.1.exon6;Parent=MsaT043385.1
Chr8	CDS	44756626	44758286	44756626	ID=cds.MsaT043385.1;Parent=MsaT043385.1
Chr8	exon	44759229	44759246	44759229	ID=MsaT043385.1.exon5;Parent=MsaT043385.1
Chr8	CDS	44759229	44759246	44759229	ID=cds.MsaT043385.1;Parent=MsaT043385.1
Chr8	exon	44759332	44759368	44759332	ID=MsaT043385.1.exon4;Parent=MsaT043385.1
Chr8	CDS	44759332	44759368	44759332	ID=cds.MsaT043385.1;Parent=MsaT043385.1
Chr8	exon	44759642	44759988	44759642	ID=MsaT043385.1.exon3;Parent=MsaT043385.1
Chr8	CDS	44759642	44759988	44759642	ID=cds.MsaT043385.1;Parent=MsaT043385.1
Chr8	exon	44760144	44762132	44760144	ID=MsaT043385.1.exon2;Parent=MsaT043385.1
Chr8	CDS	44760144	44762132	44760144	ID=cds.MsaT043385.1;Parent=MsaT043385.1
Chr8	exon	44794258	44794630	44794258	ID=MsaT043385.1.exon1;Parent=MsaT043385.1
Chr8	CDS	44794258	44794630	44794258	ID=cds.MsaT043385.1;Parent=MsaT043385.1

Gene Sequence

>MsaT043385.1

ATGAGTCTTAGAGGTACTGTTTCCCCAAACTTGGGTAATCTATCGTTCCTTGCTATACTAGCCATCCACAACAATAGCTTTGGTGGCCAGTTTCCTAAAGAGATATGTCAGTTACGTCGATTAAGGGCCATTTCTATCTCCTACAACAAGTTTGTTGGACGAATTCCTGAAGCTTTGGGAAACTTATCACAACTTCAATATTTGTATCTTGGCGCAAACAATTTTAGTGGTTTTCTTCCCAAATCTATTGGTAATCTTCGCCAGTTAAAAACTTTGGATACCATTCAAAATAGGTTGTCTGGACCCATACCTCCAACAATTTCAAACATATCTTCACTTGAAGTTCTCCATTTATCTTCTAACTACTTTTCAGGTTCGATACCCGAAGAGATTAGCTATCTTGATAAACTCGAGAATCTACTTTTGGGAAACAATAGCTTAAGTGGATCTATTCCTTCCAAAATCTTCAACATGTCATCACTTACATATTTGTATCTAGGCCAAAATCACCTCTCTGGGATAATTCCTTCAAATACGGGATATAGTCTTCCTAGTTTGCAATATCTACACTTGAATGATAACAATTTTGTTGGAAATATTCCAAATAACATATTCAACTCTTCTGATCTTATACAATTTCAATTGCATGACAATGCATTCAGTGGAACTCTACCTAATATTGCTTTTGGAGATTTACGATTCCTTGAATCGTTTATCATATATGACAACAATTTGACAATAGAAGATTCTCATCAATTCTTTACTTCCTTAACAAATTGTAGATATTTTAAATATTTGGAGCTATCAGGGAATCATATACCCAATCTTCCCAAGTCAATTGGAAATTTAACTTTAGAATTCTTCCGGGCACAATCATGTGGAATTGGTGGTTATATTCCCCTAGAAGTCGGAAACATGAGCAACTTGTTATCACTTTCTCTGTATGACAACAATAATATAAATGGACCAATACCTGGTACAGTCAAAGGGTTGCAGAAACTTCAGTATTTGGATCTTGGCAACAATGGACTACAAGGATCATTTATTGAAGAGTTTTGTGAAATGAAGAGTTTGGGTGTGTTGTATCTAAACAATAATAAGCTCTCCGGAGTTTTACCAACATGTTTGGGAAATATGACTTCTATTATAAGGTTATACATAGGATCTAACAGTCTGAACTCTAAGATACCTTCCTCTCTTTGGAGTGTCATAGATATCTTAGAGGTAGATTTGTCCTCTAATGCCTTCATTGGTAATCTTCCATCTGAGATTGGGAATCTGAGAGCAATTATACTATTAGACCTATCAAGAAATCAGATTTCAAGCAACATTCCAACAACCATCAGTTCCTTACAGACATTGCAGAATCTCTCCTTAGCAGATAATAAACTGAATGGATCAATTCCCGAATCACTTGGTCAAATGATAAGCTTGATCTCCTTGGACTTGTCCCAAAATATGTTAACTGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTATCTTCAAAACATCAACATCTCATATAATAGATTACAAGGAGAGATTCCTGATGGTGGACATTTCAAAAACTTCACAGCTCAATCATTTATGCATAATGATGCACTTTGCGGCGATCCTCGCCTCCAAGTACTTACATGTGGTAATCAAGTTAAGAAATGGTCAATGGAAAAAAAGCTTATATTGCAATGCATACTTCCCATAGTTGTGTCAGCCATTATGGTTGTTGCTTGCATCATAGTTTTAAAACATAATAAAAGGAGAAAGAATGAAAATACTCTTGAAAGGGGTTTGTCAACTTTGGGAGCTCCAAGAAGAATATCCTATTATGAACTCGTGCAAGCAACTAATGGATTCAATGAGAGTAATTTCCTTGGAAGTGGGGGATTTGGCTCTGTTTATCAGGGGAAGCTTCTTGATGGTGAGATGATTGCCGTTAAAGTAATTGATTTGCAATCAGAGGCAAAATCAAAGAGCTTTGATGCAGAGTGCAATGCAATGAGAAATCTACGACATCGAAATCTGGTAAAGATTATCAGCAGTTGCTCAAATCCTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCAAATAACTATTGTCTAAATTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGCGATCTAAAGCCTTCTAATGTCTTATTGGATGAAAATATGGTTGCACATGTAAGCGATTTTGGTCTTGCCAAGCTTATGGATGAAGGACAATCTAAAACTCATACACAAACTTTGGCTACTATTGGATACCTTGCACCAGAGTTTGGATCTAAAGGTATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAGATCTTCACAAGAAAAAAGCCAACAGATGATATGTTTGTTGCAGAACTAAGCTTGAAGACATGGATCAGTGGATCATTGCCTAATTCAATTATGGAGGTCATGGATTCAAATTTAGTCCAACTAACTGGGGGACGAATTGATGATATATCGACTCACATGTCATCTATTTTTAGTTTAGCCCTGAGTTGTTGTGAAGATTCACCTGAAGCAAGAATCAATATGGCAGATGTTATTGCGTCGCTAATTAAGATCAAGGCTTTGGTTCTTGGCGCAAACATGTCTTTTGAGGAGAGTAGTGAGGGTCTTGACTCATTGTGTGGTGTCTACTTACTAGGTTCGATTCCCGAGGAGATTGGCTATCTTGATAAACTTGAGAAACTGTTTTTGGGAAACAATAGCTTAAGTGGATCTATTCCTTCCAAAATCTTTAACATGTCATCACTCACAGATTTGGTGGTTGCTCAGAATAGTCTCTCAGGCACAATTCCATCAAATACGGGATATAGCCTTCCTAGCGTGCAATATCTAGAATTGGATCATAACAATTTGGTTGGAAATATTCCAAATAACATATTCAACTCTTCTAATCTTATTGTTTTTCAATTGTGTTCGAATGCATTCAGTGGAACTCTACCCAGTATTGCTTTTGGAGATTTAGGATTGCTTGAATCGTTTTTAATATATGACAACAATTTGACAATAGAAGATTCTCATCAATTCTTTACTTCCTTGACAAAATGTAGATATTTGAAATATCTTGACTTATCAGGTAATCATATACCCAATCTTCCTAAGTCAATTGGAAACATAACTTCAGAATGGTTCGCTGCACAATCATGTGGAATTGATGGTAATATTCCCCAAGAAGTTGGAAACATGACCAACTTGCTAACTTTGGGTCTTTCTGGGAATAATATAACTGGACCAATACCTGGTACATTCAAAAAGTTGCAAAAACTTCAACTTTTAGGTCTTAGCTACAATGGACTACAAGGATCATTCATTGAGGAGCTTTGTGAAATGAAAAGTTTGGGTGAGTTGTATCTAGACAATAATAAGCTCTCTGGAGTTTTACCAATATGTATGGGAAATATGATTTCTCTTATAAGGATACGTCTAGGATCTAACAATTTGAAGTCCAGTGTACCTTTATCTCTTTGGAGTCTTAGAGATATATTAGAGATAAATTTTTCTTCAAATTCTTTAATTGGTAATCTTCCACCTGAGATGGGGAATTTGAGAGCAATTATACGATTAGACCTATCAAGAAATCAGATTTCAAGCAACATTCCAGCAACCATCAGTTCCTTACAAAATTTGCAGAATCTCTCCTTAGCTCATAACAAATTGAATGGATCAATTCCCACATCACTTAGTGAAATGGTAAGCTTGATCTCCTTGGACTTGTCCCAAAATATGTTAACTGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTATCTTCAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTGATGATGGACATTTCAAAAATTTCACAGCTCAATCATTTATGCATAATGATGCACTTTGCGGCGATCCTCGCCTCCAAGTACCTCCATGTGGTAATCAAGTTAAGAAATGGTCAATGGAAAAAAAGCTTATATTGAGATGCATACTTCCCATAGTTGTGTCAGCCATTTTGGTTGTTGCTTGCATCATAGTTTTAAAACATAATAAACAGAGAAAGAATGAAAATACTCTTGAAAGGGGTTTGTCAACTTTGGGAGCTCCAAGAAGAATATCATATTATGAACTTGTGCAAGCAACAGATGGATTCAATGAGAGCAAATTACTTGGAAGTGAGGGATTTGGCTCTGTTTATCAGGGGAAGCTTCTTGATGGTGAAATGATTGCCGTTAAAGTAATTGATTTGCAATCAGAGGCAAAATCAAAGAGCTTTGATGCAGAATGCAATGCAATGAGAAATCTACGACATCGAAATCTGGTAAAGATTATCTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCAAATAACTATTGTCTAAATTTCTTACAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCAGCGGTTCATTGTGATCTAAAGCCTTCCAATGTCTTATTGGATGAAAATATGGTTGCACATGTTAGCGATTTTGGTATTGCCAAGCTCATGGATGAAGGACAATCTAAGACTCATACATTGACTTTAGCTACTATTGGATATCTTGCACCAGCCCTGAGTTGTTGTGAAGATTCACCTGAAGCAAGAATCAACATGGCAGATGTTATTGCGACGCTAATCAAAATCAAGACTTTGGTTGTTGGCGCAAACACAGTCTAG

Protein sequence

>MsaT043385.1

MSLRGTVSPNLGNLSFLAILAIHNNSFGGQFPKEICQLRRLRAISISYNKFVGRIPEALGNLSQLQYLYLGANNFSGFLPKSIGNLRQLKTLDTIQNRLSGPIPPTISNISSLEVLHLSSNYFSGSIPEEISYLDKLENLLLGNNSLSGSIPSKIFNMSSLTYLYLGQNHLSGIIPSNTGYSLPSLQYLHLNDNNFVGNIPNNIFNSSDLIQFQLHDNAFSGTLPNIAFGDLRFLESFIIYDNNLTIEDSHQFFTSLTNCRYFKYLELSGNHIPNLPKSIGNLTLEFFRAQSCGIGGYIPLEVGNMSNLLSLSLYDNNNINGPIPGTVKGLQKLQYLDLGNNGLQGSFIEEFCEMKSLGVLYLNNNKLSGVLPTCLGNMTSIIRLYIGSNSLNSKIPSSLWSVIDILEVDLSSNAFIGNLPSEIGNLRAIILLDLSRNQISSNIPTTISSLQTLQNLSLADNKLNGSIPESLGQMISLISLDLSQNMLTGVIPKSLESLLYLQNINISYNRLQGEIPDGGHFKNFTAQSFMHNDALCGDPRLQVLTCGNQVKKWSMEKKLILQCILPIVVSAIMVVACIIVLKHNKRRKNENTLERGLSTLGAPRRISYYELVQATNGFNESNFLGSGGFGSVYQGKLLDGEMIAVKVIDLQSEAKSKSFDAECNAMRNLRHRNLVKIISSCSNPDFKSLVMEFMSNGSVDKWLYSNNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGLAKLMDEGQSKTHTQTLATIGYLAPEFGSKGIVSVKGDVYSYGIMLMEIFTRKKPTDDMFVAELSLKTWISGSLPNSIMEVMDSNLVQLTGGRIDDISTHMSSIFSLALSCCEDSPEARINMADVIASLIKIKALVLGANMSFEESSEGLDSLCGVYLLGSIPEEIGYLDKLEKLFLGNNSLSGSIPSKIFNMSSLTDLVVAQNSLSGTIPSNTGYSLPSVQYLELDHNNLVGNIPNNIFNSSNLIVFQLCSNAFSGTLPSIAFGDLGLLESFLIYDNNLTIEDSHQFFTSLTKCRYLKYLDLSGNHIPNLPKSIGNITSEWFAAQSCGIDGNIPQEVGNMTNLLTLGLSGNNITGPIPGTFKKLQKLQLLGLSYNGLQGSFIEELCEMKSLGELYLDNNKLSGVLPICMGNMISLIRIRLGSNNLKSSVPLSLWSLRDILEINFSSNSLIGNLPPEMGNLRAIIRLDLSRNQISSNIPATISSLQNLQNLSLAHNKLNGSIPTSLSEMVSLISLDLSQNMLTGVIPKSLESLLYLQNINFSYNRLQGEIPDDGHFKNFTAQSFMHNDALCGDPRLQVPPCGNQVKKWSMEKKLILRCILPIVVSAILVVACIIVLKHNKQRKNENTLERGLSTLGAPRRISYYELVQATDGFNESKLLGSEGFGSVYQGKLLDGEMIAVKVIDLQSEAKSKSFDAECNAMRNLRHRNLVKIIFMSNGSVDKWLYSNNYCLNFLQRLNIMIDVASALEYLHHGSSIPAVHCDLKPSNVLLDENMVAHVSDFGIAKLMDEGQSKTHTLTLATIGYLAPALSCCEDSPEARINMADVIATLIKIKTLVVGANTV*