Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043452 | XP_003628585.1 | 96.127 | 284 | 4 | 2 | 1 | 283 | 1 | 278 | 0.0 | 550 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043452 | sp|Q84T08|BH089_ORYSJ | 66.832 | 202 | 60 | 5 | 88 | 283 | 65 | 265 | 2.87e-78 | 241 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043452 | tr|G7LEL6|G7LEL6_MEDTR | 96.127 | 284 | 4 | 2 | 1 | 283 | 1 | 278 | 0.0 | 550 |
Gene ID | Type | Classification |
---|---|---|
MsaG043452 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043452 | MtrunA17_Chr8g0363921 | 96.127 | 284 | 4 | 2 | 1 | 283 | 1 | 278 | 0.0 | 550 |
MsaG043452 | MtrunA17_Chr5g0415291 | 70.698 | 215 | 45 | 6 | 75 | 283 | 37 | 239 | 1.60e-96 | 283 |
MsaG043452 | MtrunA17_Chr7g0234761 | 53.659 | 205 | 73 | 6 | 82 | 274 | 234 | 428 | 2.45e-52 | 178 |
MsaG043452 | MtrunA17_Chr8g0339091 | 63.309 | 139 | 40 | 3 | 107 | 237 | 237 | 372 | 1.07e-50 | 174 |
MsaG043452 | MtrunA17_Chr5g0421111 | 71.930 | 114 | 30 | 1 | 132 | 245 | 343 | 454 | 2.16e-47 | 166 |
MsaG043452 | MtrunA17_Chr8g0365941 | 55.152 | 165 | 64 | 4 | 82 | 245 | 239 | 394 | 9.57e-47 | 162 |
MsaG043452 | MtrunA17_Chr1g0152131 | 51.412 | 177 | 79 | 3 | 79 | 255 | 190 | 359 | 1.57e-45 | 158 |
MsaG043452 | MtrunA17_Chr4g0035101 | 75.000 | 100 | 25 | 0 | 150 | 249 | 137 | 236 | 1.10e-44 | 154 |
MsaG043452 | MtrunA17_Chr3g0144641 | 60.417 | 144 | 44 | 4 | 121 | 252 | 150 | 292 | 2.31e-44 | 155 |
MsaG043452 | MtrunA17_Chr8g0385911 | 88.000 | 75 | 9 | 0 | 153 | 227 | 142 | 216 | 3.20e-40 | 142 |
MsaG043452 | MtrunA17_Chr3g0131771 | 82.716 | 81 | 14 | 0 | 147 | 227 | 138 | 218 | 8.67e-40 | 141 |
MsaG043452 | MtrunA17_Chr7g0258161 | 72.093 | 86 | 24 | 0 | 150 | 235 | 167 | 252 | 1.67e-37 | 135 |
MsaG043452 | MtrunA17_Chr1g0174161 | 69.412 | 85 | 26 | 0 | 153 | 237 | 157 | 241 | 4.02e-36 | 131 |
MsaG043452 | MtrunA17_Chr6g0484271 | 45.679 | 162 | 64 | 4 | 75 | 236 | 98 | 235 | 2.22e-34 | 125 |
MsaG043452 | MtrunA17_Chr4g0074161 | 59.756 | 82 | 32 | 1 | 140 | 221 | 190 | 270 | 4.13e-22 | 95.1 |
MsaG043452 | MtrunA17_Chr1g0190731 | 58.974 | 78 | 26 | 2 | 144 | 221 | 186 | 257 | 6.38e-20 | 88.2 |
MsaG043452 | MtrunA17_Chr4g0032951 | 33.537 | 164 | 98 | 3 | 57 | 220 | 267 | 419 | 1.72e-15 | 75.9 |
MsaG043452 | MtrunA17_Chr1g0182791 | 47.561 | 82 | 41 | 2 | 158 | 239 | 319 | 398 | 2.72e-15 | 75.9 |
MsaG043452 | MtrunA17_Chr2g0329041 | 38.194 | 144 | 72 | 5 | 86 | 218 | 257 | 394 | 3.90e-15 | 75.1 |
MsaG043452 | MtrunA17_Chr1g0193321 | 50.000 | 64 | 31 | 1 | 158 | 221 | 464 | 526 | 4.57e-15 | 75.1 |
MsaG043452 | MtrunA17_Chr1g0174271 | 48.101 | 79 | 36 | 1 | 144 | 222 | 291 | 364 | 1.30e-13 | 70.5 |
MsaG043452 | MtrunA17_Chr4g0014771 | 49.231 | 65 | 33 | 0 | 156 | 220 | 118 | 182 | 3.70e-13 | 66.6 |
MsaG043452 | MtrunA17_Chr7g0258181 | 44.595 | 74 | 41 | 0 | 156 | 229 | 243 | 316 | 4.76e-13 | 68.2 |
MsaG043452 | MtrunA17_Chr1g0184841 | 60.606 | 66 | 25 | 1 | 156 | 221 | 120 | 184 | 5.17e-13 | 67.8 |
MsaG043452 | MtrunA17_Chr1g0152651 | 49.231 | 65 | 32 | 1 | 156 | 220 | 274 | 337 | 1.89e-12 | 66.6 |
MsaG043452 | MtrunA17_Chr1g0153241 | 36.364 | 110 | 50 | 4 | 113 | 222 | 61 | 150 | 3.98e-12 | 65.1 |
MsaG043452 | MtrunA17_Chr8g0351881 | 47.692 | 65 | 34 | 0 | 156 | 220 | 316 | 380 | 8.10e-12 | 65.1 |
MsaG043452 | MtrunA17_Chr5g0393721 | 50.000 | 64 | 31 | 1 | 157 | 220 | 225 | 287 | 9.25e-12 | 64.7 |
MsaG043452 | MtrunA17_Chr3g0134741 | 35.659 | 129 | 69 | 3 | 105 | 220 | 165 | 292 | 1.14e-11 | 64.3 |
MsaG043452 | MtrunA17_Chr7g0262691 | 46.875 | 64 | 33 | 1 | 158 | 221 | 254 | 316 | 1.32e-11 | 64.7 |
MsaG043452 | MtrunA17_Chr7g0271251 | 48.438 | 64 | 32 | 1 | 158 | 221 | 434 | 496 | 1.81e-11 | 64.3 |
MsaG043452 | MtrunA17_Chr3g0095391 | 46.875 | 64 | 33 | 1 | 158 | 221 | 311 | 373 | 2.83e-11 | 63.5 |
MsaG043452 | MtrunA17_Chr5g0402031 | 50.000 | 56 | 27 | 1 | 167 | 222 | 116 | 170 | 9.99e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043452 | AT1G59640.1 | 58.419 | 291 | 86 | 10 | 1 | 283 | 1 | 264 | 1.68e-96 | 285 |
MsaG043452 | AT1G59640.2 | 57.258 | 248 | 72 | 9 | 1 | 241 | 1 | 221 | 5.00e-75 | 233 |
MsaG043452 | AT5G62610.2 | 51.525 | 295 | 117 | 13 | 1 | 283 | 1 | 281 | 4.11e-70 | 218 |
MsaG043452 | AT5G62610.1 | 51.525 | 295 | 117 | 13 | 1 | 283 | 1 | 281 | 4.11e-70 | 218 |
MsaG043452 | AT3G07340.2 | 52.151 | 186 | 59 | 4 | 64 | 241 | 180 | 343 | 2.82e-48 | 166 |
MsaG043452 | AT3G07340.1 | 52.151 | 186 | 59 | 4 | 64 | 241 | 180 | 343 | 5.73e-48 | 166 |
MsaG043452 | AT1G26260.3 | 56.329 | 158 | 63 | 2 | 90 | 246 | 110 | 262 | 1.68e-46 | 159 |
MsaG043452 | AT1G26260.5 | 56.329 | 158 | 63 | 2 | 90 | 246 | 139 | 291 | 3.38e-46 | 159 |
MsaG043452 | AT1G26260.4 | 56.329 | 158 | 63 | 2 | 90 | 246 | 161 | 313 | 5.56e-46 | 159 |
MsaG043452 | AT1G26260.1 | 56.329 | 158 | 63 | 2 | 90 | 246 | 161 | 313 | 5.56e-46 | 159 |
MsaG043452 | AT1G26260.6 | 56.329 | 158 | 63 | 2 | 90 | 246 | 161 | 313 | 5.56e-46 | 159 |
MsaG043452 | AT1G26260.2 | 56.329 | 158 | 63 | 2 | 90 | 246 | 161 | 313 | 5.56e-46 | 159 |
MsaG043452 | AT5G48560.2 | 77.451 | 102 | 19 | 3 | 141 | 241 | 289 | 387 | 8.14e-46 | 160 |
MsaG043452 | AT5G48560.1 | 77.451 | 102 | 19 | 3 | 141 | 241 | 289 | 387 | 1.31e-45 | 160 |
MsaG043452 | AT1G68920.3 | 75.758 | 99 | 24 | 0 | 146 | 244 | 292 | 390 | 5.81e-45 | 158 |
MsaG043452 | AT1G68920.1 | 75.758 | 99 | 24 | 0 | 146 | 244 | 293 | 391 | 5.91e-45 | 158 |
MsaG043452 | AT1G68920.4 | 75.758 | 99 | 24 | 0 | 146 | 244 | 293 | 391 | 5.91e-45 | 158 |
MsaG043452 | AT1G68920.2 | 75.758 | 99 | 24 | 0 | 146 | 244 | 293 | 391 | 5.91e-45 | 158 |
MsaG043452 | AT3G23690.1 | 61.029 | 136 | 42 | 3 | 95 | 230 | 141 | 265 | 8.26e-44 | 153 |
MsaG043452 | AT5G50915.3 | 56.115 | 139 | 49 | 3 | 91 | 227 | 79 | 207 | 2.85e-43 | 149 |
MsaG043452 | AT5G50915.4 | 56.115 | 139 | 49 | 3 | 91 | 227 | 79 | 207 | 2.85e-43 | 149 |
MsaG043452 | AT5G50915.1 | 56.522 | 138 | 48 | 3 | 91 | 226 | 79 | 206 | 6.72e-43 | 148 |
MsaG043452 | AT5G50915.2 | 56.522 | 138 | 48 | 3 | 91 | 226 | 79 | 206 | 6.72e-43 | 148 |
MsaG043452 | AT1G10120.2 | 70.833 | 96 | 28 | 0 | 149 | 244 | 199 | 294 | 2.39e-42 | 149 |
MsaG043452 | AT1G10120.1 | 70.833 | 96 | 28 | 0 | 149 | 244 | 199 | 294 | 2.39e-42 | 149 |
MsaG043452 | AT4G36540.1 | 45.550 | 191 | 86 | 3 | 54 | 242 | 53 | 227 | 9.59e-42 | 146 |
MsaG043452 | AT4G36540.2 | 46.032 | 189 | 84 | 3 | 54 | 240 | 53 | 225 | 2.65e-41 | 144 |
MsaG043452 | AT2G18300.2 | 70.103 | 97 | 29 | 0 | 146 | 242 | 175 | 271 | 7.34e-41 | 144 |
MsaG043452 | AT4G34530.1 | 82.500 | 80 | 14 | 0 | 150 | 229 | 166 | 245 | 1.41e-40 | 144 |
MsaG043452 | AT2G18300.3 | 70.103 | 97 | 29 | 0 | 146 | 242 | 175 | 271 | 1.42e-40 | 144 |
MsaG043452 | AT2G18300.1 | 71.579 | 95 | 27 | 0 | 146 | 240 | 175 | 269 | 2.37e-40 | 143 |
MsaG043452 | AT2G42300.4 | 69.318 | 88 | 27 | 0 | 150 | 237 | 179 | 266 | 2.39e-38 | 136 |
MsaG043452 | AT3G57800.2 | 71.591 | 88 | 25 | 0 | 150 | 237 | 198 | 285 | 8.73e-38 | 137 |
MsaG043452 | AT2G42300.1 | 65.957 | 94 | 32 | 0 | 150 | 243 | 179 | 272 | 1.18e-37 | 135 |
MsaG043452 | AT1G25330.1 | 48.507 | 134 | 60 | 2 | 113 | 244 | 66 | 192 | 4.46e-34 | 124 |
MsaG043452 | AT1G18400.2 | 74.667 | 75 | 19 | 0 | 154 | 228 | 143 | 217 | 9.00e-34 | 123 |
MsaG043452 | AT1G18400.1 | 74.667 | 75 | 19 | 0 | 154 | 228 | 143 | 217 | 1.58e-33 | 123 |
MsaG043452 | AT1G73830.2 | 69.512 | 82 | 25 | 0 | 155 | 236 | 146 | 227 | 2.94e-33 | 122 |
MsaG043452 | AT1G73830.1 | 69.512 | 82 | 25 | 0 | 155 | 236 | 146 | 227 | 2.98e-33 | 122 |
MsaG043452 | AT3G57800.1 | 45.390 | 141 | 30 | 1 | 150 | 243 | 198 | 338 | 5.89e-29 | 114 |
MsaG043452 | AT2G24260.2 | 63.014 | 73 | 26 | 1 | 149 | 221 | 28 | 99 | 1.86e-22 | 93.6 |
MsaG043452 | AT2G24260.1 | 63.014 | 73 | 26 | 1 | 149 | 221 | 131 | 202 | 1.17e-21 | 93.6 |
MsaG043452 | AT4G30980.1 | 68.182 | 66 | 20 | 1 | 156 | 221 | 130 | 194 | 5.62e-21 | 90.9 |
MsaG043452 | AT4G30980.2 | 68.182 | 66 | 20 | 1 | 156 | 221 | 178 | 242 | 7.31e-21 | 91.3 |
MsaG043452 | AT5G58010.1 | 61.842 | 76 | 28 | 1 | 146 | 221 | 89 | 163 | 7.66e-21 | 90.5 |
MsaG043452 | AT2G42300.5 | 78.723 | 47 | 10 | 0 | 150 | 196 | 179 | 225 | 2.81e-19 | 84.7 |
MsaG043452 | AT2G42300.3 | 78.723 | 47 | 10 | 0 | 150 | 196 | 179 | 225 | 2.81e-19 | 84.7 |
MsaG043452 | AT2G42300.2 | 80.435 | 46 | 9 | 0 | 150 | 195 | 179 | 224 | 3.33e-19 | 84.7 |
MsaG043452 | AT4G02590.3 | 48.544 | 103 | 47 | 3 | 124 | 221 | 46 | 147 | 5.57e-15 | 73.2 |
MsaG043452 | AT2G20180.7 | 51.562 | 64 | 30 | 1 | 158 | 221 | 209 | 271 | 5.89e-15 | 74.7 |
MsaG043452 | AT2G20180.1 | 51.562 | 64 | 30 | 1 | 158 | 221 | 209 | 271 | 5.89e-15 | 74.7 |
MsaG043452 | AT2G20180.5 | 51.562 | 64 | 30 | 1 | 158 | 221 | 209 | 271 | 5.89e-15 | 74.7 |
MsaG043452 | AT2G20180.4 | 51.562 | 64 | 30 | 1 | 158 | 221 | 280 | 342 | 7.62e-15 | 74.7 |
MsaG043452 | AT2G20180.6 | 51.562 | 64 | 30 | 1 | 158 | 221 | 280 | 342 | 7.62e-15 | 74.7 |
MsaG043452 | AT2G20180.2 | 51.562 | 64 | 30 | 1 | 158 | 221 | 280 | 342 | 7.62e-15 | 74.7 |
MsaG043452 | AT2G20180.3 | 51.562 | 64 | 30 | 1 | 158 | 221 | 280 | 342 | 7.62e-15 | 74.7 |
MsaG043452 | AT1G09530.3 | 50.000 | 64 | 31 | 1 | 158 | 221 | 339 | 401 | 9.00e-15 | 74.7 |
MsaG043452 | AT1G09530.2 | 50.000 | 64 | 31 | 1 | 158 | 221 | 339 | 401 | 9.00e-15 | 74.7 |
MsaG043452 | AT1G09530.5 | 50.000 | 64 | 31 | 1 | 158 | 221 | 339 | 401 | 9.00e-15 | 74.7 |
MsaG043452 | AT1G09530.1 | 50.000 | 64 | 31 | 1 | 158 | 221 | 339 | 401 | 9.00e-15 | 74.7 |
MsaG043452 | AT1G09530.4 | 50.000 | 64 | 31 | 1 | 158 | 221 | 339 | 401 | 9.00e-15 | 74.7 |
MsaG043452 | AT1G09530.6 | 50.000 | 64 | 31 | 1 | 158 | 221 | 339 | 401 | 9.00e-15 | 74.7 |
MsaG043452 | AT4G02590.2 | 48.544 | 103 | 47 | 3 | 124 | 221 | 109 | 210 | 9.12e-15 | 73.6 |
MsaG043452 | AT4G02590.1 | 48.544 | 103 | 47 | 3 | 124 | 221 | 109 | 210 | 9.12e-15 | 73.6 |
MsaG043452 | AT1G03040.1 | 48.544 | 103 | 47 | 3 | 124 | 221 | 107 | 208 | 1.97e-14 | 72.4 |
MsaG043452 | AT1G03040.3 | 48.544 | 103 | 47 | 3 | 124 | 221 | 107 | 208 | 2.42e-14 | 72.4 |
MsaG043452 | AT4G28800.1 | 44.000 | 75 | 41 | 1 | 159 | 233 | 252 | 325 | 1.53e-13 | 70.9 |
MsaG043452 | AT1G03040.2 | 54.217 | 83 | 35 | 2 | 141 | 221 | 122 | 203 | 2.38e-13 | 69.3 |
MsaG043452 | AT2G20180.8 | 50.820 | 61 | 29 | 1 | 158 | 218 | 280 | 339 | 3.53e-13 | 69.3 |
MsaG043452 | AT2G42280.1 | 50.000 | 64 | 32 | 0 | 156 | 219 | 279 | 342 | 3.80e-13 | 69.3 |
MsaG043452 | AT1G51140.1 | 53.125 | 64 | 30 | 0 | 156 | 219 | 304 | 367 | 4.17e-13 | 69.3 |
MsaG043452 | AT4G28815.2 | 51.724 | 58 | 27 | 1 | 159 | 216 | 71 | 127 | 4.80e-13 | 67.4 |
MsaG043452 | AT2G42280.3 | 51.515 | 66 | 30 | 1 | 156 | 219 | 279 | 344 | 8.26e-13 | 68.2 |
MsaG043452 | AT4G09180.1 | 46.269 | 67 | 36 | 0 | 154 | 220 | 182 | 248 | 8.60e-13 | 67.4 |
MsaG043452 | AT4G28800.2 | 45.833 | 72 | 37 | 2 | 159 | 229 | 264 | 334 | 1.10e-12 | 68.2 |
MsaG043452 | AT4G28815.1 | 51.724 | 58 | 27 | 1 | 159 | 216 | 147 | 203 | 1.55e-12 | 67.0 |
MsaG043452 | AT4G28790.1 | 35.200 | 125 | 61 | 5 | 158 | 278 | 273 | 381 | 1.62e-12 | 67.4 |
MsaG043452 | AT2G46970.1 | 43.836 | 73 | 35 | 2 | 154 | 221 | 216 | 287 | 2.43e-12 | 67.0 |
MsaG043452 | AT2G46970.2 | 43.836 | 73 | 35 | 2 | 154 | 221 | 185 | 256 | 2.68e-12 | 67.0 |
MsaG043452 | AT2G46970.3 | 43.836 | 73 | 35 | 2 | 154 | 221 | 194 | 265 | 3.16e-12 | 66.6 |
MsaG043452 | AT4G33880.1 | 42.857 | 84 | 45 | 2 | 139 | 220 | 247 | 329 | 4.08e-12 | 66.2 |
MsaG043452 | AT1G35460.1 | 46.154 | 65 | 35 | 0 | 156 | 220 | 181 | 245 | 5.12e-12 | 65.1 |
MsaG043452 | AT4G00050.2 | 47.692 | 65 | 33 | 1 | 156 | 220 | 105 | 168 | 1.37e-11 | 64.3 |
MsaG043452 | AT1G27740.1 | 49.231 | 65 | 32 | 1 | 156 | 220 | 167 | 230 | 2.12e-11 | 63.2 |
MsaG043452 | AT2G14760.1 | 49.231 | 65 | 32 | 1 | 156 | 220 | 237 | 300 | 2.15e-11 | 63.9 |
MsaG043452 | AT4G00050.1 | 47.692 | 65 | 33 | 1 | 156 | 220 | 207 | 270 | 2.37e-11 | 63.9 |
MsaG043452 | AT4G00050.3 | 47.692 | 65 | 33 | 1 | 156 | 220 | 207 | 270 | 2.85e-11 | 63.9 |
MsaG043452 | AT4G36930.1 | 47.541 | 61 | 31 | 1 | 162 | 222 | 197 | 256 | 8.70e-11 | 62.4 |
Find 94 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTCTTCAATTTAGGTTAT+TGG | 0.179282 | 8:+45947307 | MsaT043452.1:intron |
TGCTTAACACTTACATCTTT+TGG | 0.201350 | 8:-45947562 | None:intergenic |
TTTCTTCAATTTAGGTTATT+GGG | 0.256415 | 8:+45947308 | MsaT043452.1:intron |
CAGTTTCCAGCGGCGATTAA+TGG | 0.284846 | 8:+45945538 | MsaT043452.1:CDS |
TTTAGTTCCTGGTTGTAATA+AGG | 0.288451 | 8:+45947067 | MsaT043452.1:CDS |
CCGCAGTTTGGGAACGGTTT+AGG | 0.291510 | 8:+45945589 | MsaT043452.1:CDS |
GGCATTGGCACCGCCATTAC+TGG | 0.302053 | 8:-45945743 | None:intergenic |
GACTAAGAAGGCCGCAGTTT+GGG | 0.309614 | 8:+45945578 | MsaT043452.1:CDS |
ATTCTACAGGATTTAGTTCC+TGG | 0.338943 | 8:+45947056 | MsaT043452.1:CDS |
TTAGGACAGTTTGGTGAGTT+TGG | 0.345423 | 8:+45945607 | MsaT043452.1:CDS |
AATGGCGGCGGAGGTGGATT+AGG | 0.359141 | 8:+45945556 | MsaT043452.1:CDS |
CGTTTAGTTTAGCGGAGATC+TGG | 0.375505 | 8:+45945515 | MsaT043452.1:CDS |
CAACAAACGTTTGATCTTGC+CGG | 0.377074 | 8:+45948123 | MsaT043452.1:CDS |
ATTACCATCCCGGTTTAAAC+CGG | 0.385440 | 8:-45945632 | None:intergenic |
ACCTGCATATGTAACCATTC+TGG | 0.392490 | 8:-45948195 | None:intergenic |
CCCTCGTTCATCATCGCTCC+TGG | 0.400423 | 8:-45945460 | None:intergenic |
ACATCCATGTTCGAGCTAGA+AGG | 0.403285 | 8:+45946642 | MsaT043452.1:CDS |
TGGACAATAAACAGGCTAGA+AGG | 0.405648 | 8:+45947009 | MsaT043452.1:intron |
TTTGAAGGAGAAGTCAGTTC+AGG | 0.413433 | 8:+45946563 | MsaT043452.1:CDS |
CAGATCTCCGCTAAACTAAA+CGG | 0.416576 | 8:-45945514 | None:intergenic |
GCGATTAATGGCGGCGGAGG+TGG | 0.426598 | 8:+45945550 | MsaT043452.1:CDS |
AGTTTGGACCCGGTTTAAAC+CGG | 0.426792 | 8:+45945623 | MsaT043452.1:CDS |
GGACTAAGAAGGCCGCAGTT+TGG | 0.428490 | 8:+45945577 | MsaT043452.1:CDS |
CAGTTTGGTGAGTTTGGACC+CGG | 0.446797 | 8:+45945613 | MsaT043452.1:CDS |
GGAAAACGGACTAAAGCATC+AGG | 0.450766 | 8:+45946512 | MsaT043452.1:CDS |
CTTGTAGCTTGTGAAACAAA+TGG | 0.451137 | 8:-45948150 | None:intergenic |
GGTTTAAACCGGGATGGTAA+TGG | 0.452515 | 8:+45945634 | MsaT043452.1:CDS |
AAGCAGTAAGCCACCTCCTT+CGG | 0.454624 | 8:+45946601 | MsaT043452.1:CDS |
TACGACGCCGTTTAGTTTAG+CGG | 0.455033 | 8:+45945507 | MsaT043452.1:CDS |
TGAAAGGATGAAAATTCTAC+AGG | 0.461627 | 8:+45947043 | MsaT043452.1:CDS |
TAGTGAACCGAAATGGATCC+AGG | 0.464407 | 8:+45945442 | None:intergenic |
AGTTAATTCAAGACTCAATA+CGG | 0.468391 | 8:+45947522 | MsaT043452.1:CDS |
GTCGTATTTCCATTCCCATT+CGG | 0.470342 | 8:-45945490 | None:intergenic |
CATCCATGTTCGAGCTAGAA+GGG | 0.474849 | 8:+45946643 | MsaT043452.1:CDS |
GGTTCATTTCCGAATGGGAA+TGG | 0.479304 | 8:+45945481 | MsaT043452.1:CDS |
GGGAACGGTTTAGGACAGTT+TGG | 0.481836 | 8:+45945598 | MsaT043452.1:CDS |
ACCAGAATGGTTACATATGC+AGG | 0.483200 | 8:+45948194 | MsaT043452.1:CDS |
ACATGGATGTAATCTTGCTT+AGG | 0.502301 | 8:-45946629 | None:intergenic |
ACGAGGGTTCATTTCCGAAT+GGG | 0.502721 | 8:+45945476 | MsaT043452.1:CDS |
AACAAGAATGAGGGTGGTGA+TGG | 0.502949 | 8:+45946536 | MsaT043452.1:CDS |
CCGCCGCCATTAATCGCCGC+TGG | 0.503828 | 8:-45945544 | None:intergenic |
GCGGCGATTAATGGCGGCGG+AGG | 0.511591 | 8:+45945547 | MsaT043452.1:CDS |
GCAGAGGTTCTTCACCAGAA+TGG | 0.515410 | 8:+45948181 | MsaT043452.1:CDS |
TGGATGTAATCTTGCTTAGG+AGG | 0.520256 | 8:-45946626 | None:intergenic |
ACTCCGGTCCATTACCATCC+CGG | 0.528802 | 8:-45945642 | None:intergenic |
TTAGGTTATTGGGAAAGCAT+TGG | 0.529281 | 8:+45947318 | MsaT043452.1:intron |
GTTTGGACCCGGTTTAAACC+GGG | 0.537559 | 8:+45945624 | MsaT043452.1:CDS |
TTAGGAGGGTCCGAAGGAGG+TGG | 0.538656 | 8:-45946611 | None:intergenic |
TCTGGTGAAGAACCTCTGCT+TGG | 0.539168 | 8:-45948177 | None:intergenic |
GGACAATAAACAGGCTAGAA+GGG | 0.544423 | 8:+45947010 | MsaT043452.1:intron |
TTACCATCCCGGTTTAAACC+GGG | 0.553757 | 8:-45945631 | None:intergenic |
CCAGCGGCGATTAATGGCGG+CGG | 0.557594 | 8:+45945544 | MsaT043452.1:CDS |
TTACATATGCAGGTAGGTGG+TGG | 0.558363 | 8:+45948204 | MsaT043452.1:CDS |
AGAAGGCCGCAGTTTGGGAA+CGG | 0.559428 | 8:+45945583 | MsaT043452.1:CDS |
AGCATCAGGGAACAAGAATG+AGG | 0.561192 | 8:+45946526 | MsaT043452.1:CDS |
AGAATGATAGTGATGGAAAA+CGG | 0.563521 | 8:+45946498 | MsaT043452.1:intron |
AACGAGGGTTCATTTCCGAA+TGG | 0.564078 | 8:+45945475 | MsaT043452.1:CDS |
TTGTGAAACAAATGGCATGC+CGG | 0.566973 | 8:-45948142 | None:intergenic |
AAGTGTGTTTCAACCAGTAA+TGG | 0.574093 | 8:+45945730 | MsaT043452.1:CDS |
GACCCCTTCTAGCTCGAACA+TGG | 0.574237 | 8:-45946646 | None:intergenic |
AAACCGGGATGGTAATGGAC+CGG | 0.576710 | 8:+45945639 | MsaT043452.1:CDS |
GGTGGTGATGGTAAATTTGA+AGG | 0.577332 | 8:+45946548 | MsaT043452.1:CDS |
GAAGGGAAAAGATTAGTGAA+AGG | 0.577890 | 8:+45947027 | MsaT043452.1:CDS |
TTTCCAGCGGCGATTAATGG+CGG | 0.585609 | 8:+45945541 | MsaT043452.1:CDS |
TGGTAAGAAGAGGCGTGACT+CGG | 0.586133 | 8:+45945693 | MsaT043452.1:CDS |
ATCACTTCAGCGCCAAGTGG+AGG | 0.597164 | 8:+45947369 | MsaT043452.1:CDS |
GTTAATTCAAGACTCAATAC+GGG | 0.604435 | 8:+45947523 | MsaT043452.1:CDS |
TGCTTAGGAGGGTCCGAAGG+AGG | 0.608784 | 8:-45946614 | None:intergenic |
TTCAAAACAACTCTTGACTC+CGG | 0.616543 | 8:-45945658 | None:intergenic |
AACATTACCTTATTACAACC+AGG | 0.621430 | 8:-45947074 | None:intergenic |
TCTTCTTACCACCACCAACA+TGG | 0.628208 | 8:-45945681 | None:intergenic |
GCATCAGGGAACAAGAATGA+GGG | 0.629320 | 8:+45946527 | MsaT043452.1:CDS |
ATGTTGGTGGTGGTAAGAAG+AGG | 0.629622 | 8:+45945683 | MsaT043452.1:CDS |
GGATGTAATCTTGCTTAGGA+GGG | 0.631066 | 8:-45946625 | None:intergenic |
TCCAGGAGCGATGATGAACG+AGG | 0.631852 | 8:+45945459 | MsaT043452.1:CDS |
GAGGTGGATTAGGACTAAGA+AGG | 0.632789 | 8:+45945566 | MsaT043452.1:CDS |
TAATGGCGGTGCCAATGCCG+TGG | 0.636011 | 8:+45945747 | MsaT043452.1:CDS |
TCTTGCTTAGGAGGGTCCGA+AGG | 0.636318 | 8:-45946617 | None:intergenic |
ATCCATGTTCGAGCTAGAAG+GGG | 0.638122 | 8:+45946644 | MsaT043452.1:CDS |
GGACCCGGTTTAAACCGGGA+TGG | 0.638557 | 8:+45945628 | MsaT043452.1:CDS |
GCTACAAGAGAGCCAAGCAG+AGG | 0.640109 | 8:+45948165 | MsaT043452.1:CDS |
TGGTTACATATGCAGGTAGG+TGG | 0.652770 | 8:+45948201 | MsaT043452.1:CDS |
GGAGATCTGGCAGTTTCCAG+CGG | 0.658016 | 8:+45945528 | MsaT043452.1:CDS |
TCAATCACTTCAGCGCCAAG+TGG | 0.659625 | 8:+45947366 | MsaT043452.1:CDS |
ATAGAATAGATACCTCCACT+TGG | 0.671733 | 8:-45947381 | None:intergenic |
TCAGGGAACAAGAATGAGGG+TGG | 0.675624 | 8:+45946530 | MsaT043452.1:CDS |
AGTCAGTTCAGGAAAGCATG+CGG | 0.677155 | 8:+45946574 | MsaT043452.1:CDS |
TGTGTTTCAACCAGTAATGG+CGG | 0.680302 | 8:+45945733 | MsaT043452.1:CDS |
GAATGGTTACATATGCAGGT+AGG | 0.689550 | 8:+45948198 | MsaT043452.1:CDS |
CCAGGAGCGATGATGAACGA+GGG | 0.693487 | 8:+45945460 | MsaT043452.1:CDS |
TTACGCGCTCTGCAAGACTG+TGG | 0.695452 | 8:-45946682 | None:intergenic |
GAAAACGGACTAAAGCATCA+GGG | 0.713041 | 8:+45946513 | MsaT043452.1:CDS |
CCTAAACCGTTCCCAAACTG+CGG | 0.713413 | 8:-45945589 | None:intergenic |
ATTGTGCAGAATGATAGTGA+TGG | 0.726537 | 8:+45946491 | MsaT043452.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 45945454 | 45948245 | 45945454 | ID=MsaG043452 |
Chr8 | mRNA | 45945454 | 45948245 | 45945454 | ID=MsaT043452.1;Parent=MsaG043452 |
Chr8 | exon | 45945454 | 45945768 | 45945454 | ID=MsaT043452.1.exon1;Parent=MsaT043452.1 |
Chr8 | CDS | 45945454 | 45945768 | 45945454 | ID=cds.MsaT043452.1;Parent=MsaT043452.1 |
Chr8 | exon | 45946500 | 45946700 | 45946500 | ID=MsaT043452.1.exon2;Parent=MsaT043452.1 |
Chr8 | CDS | 45946500 | 45946700 | 45946500 | ID=cds.MsaT043452.1;Parent=MsaT043452.1 |
Chr8 | exon | 45947023 | 45947088 | 45947023 | ID=MsaT043452.1.exon3;Parent=MsaT043452.1 |
Chr8 | CDS | 45947023 | 45947088 | 45947023 | ID=cds.MsaT043452.1;Parent=MsaT043452.1 |
Chr8 | exon | 45947322 | 45947390 | 45947322 | ID=MsaT043452.1.exon4;Parent=MsaT043452.1 |
Chr8 | CDS | 45947322 | 45947390 | 45947322 | ID=cds.MsaT043452.1;Parent=MsaT043452.1 |
Chr8 | exon | 45947499 | 45947570 | 45947499 | ID=MsaT043452.1.exon5;Parent=MsaT043452.1 |
Chr8 | CDS | 45947499 | 45947570 | 45947499 | ID=cds.MsaT043452.1;Parent=MsaT043452.1 |
Chr8 | exon | 45948117 | 45948245 | 45948117 | ID=MsaT043452.1.exon6;Parent=MsaT043452.1 |
Chr8 | CDS | 45948117 | 45948245 | 45948117 | ID=cds.MsaT043452.1;Parent=MsaT043452.1 |
Gene Sequence |
Protein sequence |