AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG043567


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG043567 MtrunA17_Chr8g0364781 93.750 144 9 0 1 144 1 144 7.59e-98 277
MsaG043567 MtrunA17_Chr7g0262351 58.400 125 49 1 5 129 15 136 1.69e-42 137
MsaG043567 MtrunA17_Chr7g0262671 62.821 78 28 1 1 78 1 77 1.75e-27 98.2
MsaG043567 MtrunA17_Chr7g0262681 65.672 67 18 2 66 132 1 62 4.79e-20 78.2
MsaG043567 MtrunA17_Chr6g0472261 54.795 73 33 0 6 78 4 76 1.47e-19 77.4
MsaG043567 MtrunA17_Chr6g0451941 34.259 108 69 1 12 119 33 138 2.05e-14 66.2
MsaG043567 MtrunA17_Chr8g0371601 31.915 141 73 4 12 131 1029 1167 1.20e-13 67.0
MsaG043567 MtrunA17_Chr8g0392301 31.159 138 67 4 15 132 864 993 3.46e-13 65.5
MsaG043567 MtrunA17_Chr1g0194731 38.017 121 55 5 15 122 331 444 6.13e-12 62.0
MsaG043567 MtrunA17_Chr5g0447641 41.791 67 39 0 15 81 1077 1143 2.38e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG043567 AT5G26594.1 56.780 118 49 1 10 127 16 131 1.03e-37 125
MsaG043567 AT3G04280.1 50.000 116 56 2 12 126 22 136 2.26e-31 109
MsaG043567 AT3G04280.2 50.000 116 56 2 12 126 22 136 2.26e-31 109
MsaG043567 AT3G04280.3 50.000 116 56 2 12 126 22 136 2.26e-31 109
MsaG043567 AT2G17820.1 27.329 161 79 3 15 139 1047 1205 1.60e-12 64.3
MsaG043567 AT2G01830.5 30.579 121 66 3 15 122 937 1052 5.57e-12 62.4
MsaG043567 AT2G01830.2 30.579 121 66 3 15 122 948 1063 5.74e-12 62.4
MsaG043567 AT2G01830.1 30.579 121 66 3 15 122 925 1040 5.78e-12 62.4
MsaG043567 AT2G01830.4 30.579 121 66 3 15 122 925 1040 5.78e-12 62.4
MsaG043567 AT2G01830.6 30.579 121 66 3 15 122 925 1040 5.78e-12 62.4
MsaG043567 AT2G01830.3 30.579 121 66 3 15 122 925 1040 5.78e-12 62.4

Find 27 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATAGTGATAAAATTTA+TGG 0.245050 8:+47994386 MsaT043567.1:CDS
TGGTGTATCCTCACACTCTA+TGG 0.342570 8:+47994356 MsaT043567.1:CDS
TGACCTAATCTTGATGGATA+AGG 0.347722 8:+47994079 MsaT043567.1:CDS
ACGTCATTTGATGAATTCTT+CGG 0.351042 8:-47993977 None:intergenic
CACAACAAGTGCTGTTAACT+TGG 0.355344 8:-47993937 None:intergenic
CGTCATTTGATGAATTCTTC+GGG 0.366651 8:-47993976 None:intergenic
AACAAAGCAACTAAGGTTGA+TGG 0.449452 8:+47994314 MsaT043567.1:CDS
GTGATAAAATTTATGGAAGC+AGG 0.456780 8:+47994393 MsaT043567.1:CDS
AATTCCATTCTTCATGCCGT+TGG 0.460947 8:+47994459 MsaT043567.1:CDS
TATCCTTATCCATCAAGATT+AGG 0.462938 8:-47994082 None:intergenic
TCTTGAGAAACCATTGGATA+AGG 0.467024 8:+47994428 MsaT043567.1:CDS
GGGATATCTAGCACTATTGT+TGG 0.469032 8:+47994336 MsaT043567.1:CDS
TATAGGCAACAAAGCAACTA+AGG 0.474253 8:+47994307 MsaT043567.1:intron
TCATTTCATCTTGTGAGGAA+TGG 0.476235 8:-47994505 None:intergenic
CAAATGACGTTGAGTAACTT+AGG 0.479404 8:+47993990 MsaT043567.1:CDS
ACCTCAGCTCCATTCATCTC+AGG 0.491878 8:-47994107 None:intergenic
AAGGATATGCCTGAGATGAA+TGG 0.499108 8:+47994098 MsaT043567.1:CDS
ACAAAGCAACTAAGGTTGAT+GGG 0.523464 8:+47994315 MsaT043567.1:CDS
CGAATATCTTGAGAAACCAT+TGG 0.533361 8:+47994422 MsaT043567.1:CDS
TTTGTTCATTTCATCTTGTG+AGG 0.533712 8:-47994510 None:intergenic
CTCCTCTTCCATAGAGTGTG+AGG 0.555361 8:-47994364 None:intergenic
ATCCTCACACTCTATGGAAG+AGG 0.570487 8:+47994362 MsaT043567.1:CDS
CAAGTTAACAGCACTTGTTG+TGG 0.584291 8:+47993938 MsaT043567.1:CDS
CTCACACTCTATGGAAGAGG+AGG 0.604784 8:+47994365 MsaT043567.1:CDS
CAAAGCAACTAAGGTTGATG+GGG 0.617733 8:+47994316 MsaT043567.1:CDS
GCAGTGGAAATTCATCAGCA+TGG 0.649906 8:+47994047 MsaT043567.1:CDS
GCCTGAGATGAATGGAGCTG+AGG 0.680215 8:+47994106 MsaT043567.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 47993909 47994527 47993909 ID=MsaG043567
Chr8 mRNA 47993909 47994527 47993909 ID=MsaT043567.1;Parent=MsaG043567
Chr8 exon 47993909 47994127 47993909 ID=MsaT043567.1.exon1;Parent=MsaT043567.1
Chr8 CDS 47993909 47994127 47993909 ID=cds.MsaT043567.1;Parent=MsaT043567.1
Chr8 exon 47994312 47994527 47994312 ID=MsaT043567.1.exon2;Parent=MsaT043567.1
Chr8 CDS 47994312 47994527 47994312 ID=cds.MsaT043567.1;Parent=MsaT043567.1
Gene Sequence

>MsaT043567.1

ATGGCATCACCATCTCAAAACTTTACATCCAAGTTAACAGCACTTGTTGTGGATGATGATGCAATGACCCGAAGAATTCATCAAATGACGTTGAGTAACTTAGGAGTTAACAACACTTGTGTGAAAAACGGAAAAGAAGCAGTGGAAATTCATCAGCATGGTAAAATTTTTGACCTAATCTTGATGGATAAGGATATGCCTGAGATGAATGGAGCTGAGGCAACAAAGCAACTAAGGTTGATGGGGATATCTAGCACTATTGTTGGTGTATCCTCACACTCTATGGAAGAGGAGGAAATAGTGATAAAATTTATGGAAGCAGGACTCGACGAATATCTTGAGAAACCATTGGATAAGGCAAAACTCAATTCCATTCTTCATGCCGTTGGAAAAATAAAAGAAAAAGAAAACTCCATTCCTCACAAGATGAAATGA

Protein sequence

>MsaT043567.1

MASPSQNFTSKLTALVVDDDAMTRRIHQMTLSNLGVNNTCVKNGKEAVEIHQHGKIFDLILMDKDMPEMNGAEATKQLRLMGISSTIVGVSSHSMEEEEIVIKFMEAGLDEYLEKPLDKAKLNSILHAVGKIKEKENSIPHKMK*