Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043626 | XP_013445934.1 | 58.537 | 369 | 51 | 8 | 1 | 363 | 1 | 273 | 2.02e-129 | 382 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043626 | sp|Q9FNN6|SRM1_ARATH | 46.748 | 246 | 101 | 7 | 11 | 230 | 12 | 253 | 2.54e-56 | 189 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043626 | tr|A0A072TS07|A0A072TS07_MEDTR | 58.537 | 369 | 51 | 8 | 1 | 363 | 1 | 273 | 9.63e-130 | 382 |
Gene ID | Type | Classification |
---|---|---|
MsaG043626 | TF | MYB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043626 | MtrunA17_Chr8g0365011 | 56.693 | 381 | 51 | 9 | 1 | 363 | 1 | 285 | 5.20e-130 | 374 |
MsaG043626 | MtrunA17_Chr1g0162081 | 50.498 | 301 | 83 | 11 | 1 | 269 | 3 | 269 | 1.17e-74 | 233 |
MsaG043626 | MtrunA17_Chr8g0364741 | 70.312 | 128 | 26 | 3 | 1 | 117 | 1 | 127 | 3.37e-52 | 169 |
MsaG043626 | MtrunA17_Chr4g0062741 | 37.003 | 327 | 109 | 14 | 11 | 274 | 8 | 300 | 4.93e-46 | 159 |
MsaG043626 | MtrunA17_Chr1g0210471 | 51.124 | 178 | 62 | 3 | 10 | 170 | 23 | 192 | 5.18e-46 | 157 |
MsaG043626 | MtrunA17_Chr8g0364731 | 53.988 | 163 | 47 | 2 | 109 | 265 | 10 | 150 | 1.53e-42 | 146 |
MsaG043626 | MtrunA17_Chr8g0364731 | 53.061 | 98 | 38 | 2 | 265 | 362 | 95 | 184 | 1.55e-21 | 90.9 |
MsaG043626 | MtrunA17_Chr5g0429521 | 43.750 | 192 | 90 | 5 | 11 | 187 | 29 | 217 | 1.77e-42 | 150 |
MsaG043626 | MtrunA17_Chr3g0104071 | 46.703 | 182 | 74 | 5 | 6 | 169 | 38 | 214 | 4.43e-42 | 149 |
MsaG043626 | MtrunA17_Chr5g0436501 | 47.337 | 169 | 80 | 2 | 10 | 169 | 26 | 194 | 4.05e-41 | 145 |
MsaG043626 | MtrunA17_Chr7g0241761 | 46.111 | 180 | 77 | 5 | 10 | 172 | 34 | 210 | 6.64e-40 | 143 |
MsaG043626 | MtrunA17_Chr5g0432921 | 43.558 | 163 | 85 | 6 | 7 | 164 | 17 | 177 | 4.33e-30 | 115 |
MsaG043626 | MtrunA17_Chr5g0432941 | 41.358 | 162 | 89 | 5 | 7 | 164 | 18 | 177 | 8.52e-29 | 111 |
MsaG043626 | MtrunA17_Chr5g0440731 | 59.155 | 71 | 28 | 1 | 99 | 168 | 104 | 174 | 5.39e-22 | 94.7 |
MsaG043626 | MtrunA17_Chr5g0440741 | 43.966 | 116 | 48 | 3 | 101 | 215 | 101 | 200 | 1.42e-21 | 93.6 |
MsaG043626 | MtrunA17_Chr5g0409841 | 40.323 | 124 | 70 | 2 | 101 | 224 | 93 | 212 | 8.56e-21 | 90.1 |
MsaG043626 | MtrunA17_Chr1g0155181 | 55.882 | 68 | 30 | 0 | 6 | 73 | 2 | 69 | 1.67e-19 | 82.0 |
MsaG043626 | MtrunA17_Chr6g0488471 | 64.615 | 65 | 21 | 1 | 102 | 166 | 99 | 161 | 3.74e-19 | 86.7 |
MsaG043626 | MtrunA17_Chr2g0331031 | 46.535 | 101 | 49 | 3 | 67 | 166 | 77 | 173 | 8.28e-19 | 86.7 |
MsaG043626 | MtrunA17_Chr4g0055931 | 46.602 | 103 | 37 | 4 | 71 | 166 | 68 | 159 | 1.06e-18 | 85.9 |
MsaG043626 | MtrunA17_Chr8g0389241 | 60.000 | 65 | 23 | 1 | 102 | 166 | 107 | 168 | 1.83e-18 | 84.3 |
MsaG043626 | MtrunA17_Chr3g0144631 | 52.308 | 65 | 31 | 0 | 11 | 75 | 16 | 80 | 9.35e-18 | 77.4 |
MsaG043626 | MtrunA17_Chr3g0141601 | 54.545 | 66 | 30 | 0 | 8 | 73 | 4 | 69 | 2.15e-17 | 76.6 |
MsaG043626 | MtrunA17_Chr5g0404101 | 59.375 | 64 | 26 | 0 | 8 | 71 | 16 | 79 | 4.61e-17 | 75.9 |
MsaG043626 | MtrunA17_Chr4g0059701 | 75.556 | 45 | 11 | 0 | 102 | 146 | 86 | 130 | 1.31e-16 | 79.3 |
MsaG043626 | MtrunA17_Chr1g0192061 | 45.192 | 104 | 50 | 4 | 63 | 162 | 22 | 122 | 1.38e-16 | 77.0 |
MsaG043626 | MtrunA17_Chr3g0092621 | 48.780 | 82 | 35 | 2 | 102 | 178 | 86 | 165 | 1.90e-16 | 76.3 |
MsaG043626 | MtrunA17_Chr5g0415191 | 59.091 | 66 | 25 | 1 | 102 | 167 | 104 | 167 | 2.50e-16 | 79.0 |
MsaG043626 | MtrunA17_Chr5g0409831 | 50.633 | 79 | 36 | 2 | 91 | 168 | 70 | 146 | 2.91e-15 | 74.3 |
MsaG043626 | MtrunA17_Chr6g0449111 | 50.725 | 69 | 34 | 0 | 5 | 73 | 4 | 72 | 3.59e-15 | 70.1 |
MsaG043626 | MtrunA17_Chr3g0135671 | 42.697 | 89 | 48 | 2 | 102 | 188 | 93 | 180 | 1.11e-14 | 72.8 |
MsaG043626 | MtrunA17_Chr6g0452791 | 68.889 | 45 | 14 | 0 | 102 | 146 | 82 | 126 | 3.42e-14 | 70.1 |
MsaG043626 | MtrunA17_Chr7g0255841 | 50.000 | 70 | 35 | 0 | 14 | 83 | 15 | 84 | 3.57e-14 | 67.8 |
MsaG043626 | MtrunA17_Chr8g0373131 | 42.857 | 70 | 39 | 1 | 11 | 80 | 5 | 73 | 2.46e-13 | 64.7 |
MsaG043626 | MtrunA17_Chr8g0373111 | 43.478 | 69 | 38 | 1 | 11 | 79 | 5 | 72 | 2.90e-13 | 64.3 |
MsaG043626 | MtrunA17_Chr8g0373121 | 43.478 | 69 | 38 | 1 | 11 | 79 | 5 | 72 | 2.90e-13 | 64.3 |
MsaG043626 | MtrunA17_Chr5g0404301 | 50.820 | 61 | 29 | 1 | 11 | 71 | 4 | 63 | 9.99e-13 | 62.8 |
MsaG043626 | MtrunA17_Chr3g0113121 | 45.570 | 79 | 38 | 1 | 101 | 174 | 96 | 174 | 1.95e-12 | 65.9 |
MsaG043626 | MtrunA17_Chr3g0081631 | 47.826 | 69 | 35 | 1 | 6 | 73 | 5 | 73 | 5.34e-12 | 61.6 |
MsaG043626 | MtrunA17_Chr8g0370131 | 35.000 | 100 | 48 | 1 | 102 | 201 | 105 | 187 | 1.49e-11 | 63.5 |
MsaG043626 | MtrunA17_Chr3g0141641 | 48.387 | 62 | 30 | 2 | 11 | 71 | 3 | 63 | 2.19e-11 | 59.7 |
MsaG043626 | MtrunA17_Chr8g0373101 | 44.262 | 61 | 33 | 1 | 11 | 71 | 5 | 64 | 3.00e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043626 | AT5G08520.1 | 46.748 | 246 | 101 | 7 | 11 | 230 | 12 | 253 | 2.58e-57 | 189 |
MsaG043626 | AT5G23650.1 | 34.759 | 374 | 156 | 13 | 11 | 349 | 13 | 333 | 2.92e-44 | 155 |
MsaG043626 | AT5G04760.1 | 43.939 | 198 | 101 | 4 | 8 | 200 | 3 | 195 | 9.23e-43 | 148 |
MsaG043626 | AT2G38090.1 | 44.681 | 188 | 77 | 5 | 6 | 169 | 24 | 208 | 1.17e-41 | 148 |
MsaG043626 | AT1G49010.1 | 42.927 | 205 | 77 | 5 | 11 | 177 | 8 | 210 | 2.37e-41 | 147 |
MsaG043626 | AT5G58900.1 | 42.373 | 177 | 82 | 3 | 11 | 169 | 34 | 208 | 2.10e-39 | 142 |
MsaG043626 | AT3G11280.2 | 42.473 | 186 | 84 | 6 | 11 | 187 | 33 | 204 | 8.19e-39 | 139 |
MsaG043626 | AT3G11280.1 | 42.473 | 186 | 84 | 6 | 11 | 187 | 33 | 204 | 8.19e-39 | 139 |
MsaG043626 | AT5G05790.2 | 43.094 | 181 | 76 | 4 | 7 | 169 | 27 | 198 | 2.62e-37 | 135 |
MsaG043626 | AT5G05790.1 | 43.094 | 181 | 76 | 4 | 7 | 169 | 27 | 198 | 2.62e-37 | 135 |
MsaG043626 | AT5G01200.1 | 41.053 | 190 | 83 | 6 | 7 | 169 | 26 | 213 | 4.63e-34 | 127 |
MsaG043626 | AT4G09450.1 | 36.765 | 204 | 106 | 6 | 10 | 211 | 6 | 188 | 3.63e-26 | 104 |
MsaG043626 | AT3G10580.2 | 37.949 | 195 | 98 | 7 | 11 | 198 | 8 | 186 | 2.90e-24 | 100 |
MsaG043626 | AT3G10580.1 | 37.949 | 195 | 98 | 7 | 11 | 198 | 8 | 186 | 4.36e-24 | 100 |
MsaG043626 | AT1G75250.2 | 52.857 | 70 | 33 | 0 | 11 | 80 | 12 | 81 | 2.16e-19 | 82.8 |
MsaG043626 | AT1G75250.1 | 52.857 | 70 | 33 | 0 | 11 | 80 | 12 | 81 | 8.54e-19 | 82.0 |
MsaG043626 | AT3G10590.1 | 35.556 | 180 | 94 | 7 | 11 | 173 | 7 | 181 | 1.03e-18 | 84.0 |
MsaG043626 | AT5G47390.1 | 56.579 | 76 | 25 | 2 | 91 | 166 | 93 | 160 | 4.08e-18 | 85.1 |
MsaG043626 | AT4G39250.1 | 52.381 | 63 | 30 | 0 | 11 | 73 | 14 | 76 | 4.71e-18 | 79.0 |
MsaG043626 | AT3G16350.1 | 52.273 | 88 | 30 | 3 | 59 | 146 | 108 | 183 | 3.43e-17 | 82.4 |
MsaG043626 | AT5G61620.1 | 57.576 | 66 | 26 | 1 | 102 | 167 | 110 | 173 | 7.09e-17 | 80.9 |
MsaG043626 | AT1G70000.1 | 63.636 | 66 | 22 | 1 | 102 | 167 | 100 | 163 | 2.13e-16 | 78.6 |
MsaG043626 | AT1G70000.2 | 63.636 | 66 | 22 | 1 | 102 | 167 | 100 | 163 | 2.13e-16 | 78.6 |
MsaG043626 | AT5G56840.1 | 56.923 | 65 | 27 | 1 | 102 | 166 | 93 | 156 | 2.65e-16 | 77.8 |
MsaG043626 | AT1G19510.1 | 46.479 | 71 | 38 | 0 | 14 | 84 | 15 | 85 | 3.15e-16 | 73.9 |
MsaG043626 | AT1G74840.2 | 68.889 | 45 | 14 | 0 | 102 | 146 | 98 | 142 | 5.68e-16 | 77.0 |
MsaG043626 | AT1G74840.1 | 68.889 | 45 | 14 | 0 | 102 | 146 | 98 | 142 | 7.13e-16 | 77.0 |
MsaG043626 | AT2G21650.1 | 47.222 | 72 | 38 | 0 | 11 | 82 | 14 | 85 | 9.90e-16 | 72.8 |
MsaG043626 | AT1G19000.2 | 66.667 | 45 | 15 | 0 | 102 | 146 | 104 | 148 | 1.71e-14 | 73.6 |
MsaG043626 | AT1G19000.1 | 66.667 | 45 | 15 | 0 | 102 | 146 | 104 | 148 | 1.71e-14 | 73.6 |
MsaG043626 | AT2G18328.1 | 52.632 | 57 | 27 | 0 | 15 | 71 | 15 | 71 | 1.81e-13 | 65.5 |
MsaG043626 | AT3G10585.1 | 34.503 | 171 | 71 | 7 | 11 | 173 | 7 | 144 | 1.04e-11 | 63.2 |
MsaG043626 | AT3G10595.1 | 24.590 | 183 | 122 | 5 | 11 | 193 | 6 | 172 | 1.30e-11 | 63.2 |
Find 120 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAACATCACTATGAGATTT+TGG | 0.187100 | 8:+48630605 | MsaT043626.1:CDS |
TGGATGATCATCTAAATTTC+TGG | 0.206174 | 8:-48631851 | None:intergenic |
TATGTTGCGGCCCCGCCTTC+TGG | 0.219640 | 8:+48631826 | MsaT043626.1:CDS |
GATGAGCAGGTTATTTCTTA+TGG | 0.229350 | 8:+48631312 | MsaT043626.1:intron |
TCGATTGCTTGCCCGGTAAT+TGG | 0.251332 | 8:-48631517 | None:intergenic |
CAGAGGATTATTTAAAGTTC+TGG | 0.281118 | 8:-48631602 | None:intergenic |
GTATCTGCTTTCGGCGCTGC+AGG | 0.317922 | 8:+48631940 | MsaT043626.1:CDS |
TCTGTTGGAACTAGAAATTT+AGG | 0.321437 | 8:+48631658 | MsaT043626.1:CDS |
ATGGTATTGGACCAGTTTCT+TGG | 0.328363 | 8:+48631992 | MsaT043626.1:CDS |
TGAAAGAGGAGCTGTGAAAA+AGG | 0.334187 | 8:+48630713 | MsaT043626.1:CDS |
CCGGGAGCAGTCAGAATTCC+TGG | 0.337631 | 8:-48631769 | None:intergenic |
GATCATCCAGCCCCACTTGC+TGG | 0.353540 | 8:+48631865 | MsaT043626.1:CDS |
ATGAGCAGGTTATTTCTTAT+GGG | 0.354456 | 8:+48631313 | MsaT043626.1:intron |
GGCATATTTGTCCAAGAAAC+TGG | 0.357689 | 8:-48632003 | None:intergenic |
GATATCCACAACATTGAATC+TGG | 0.364726 | 8:+48630633 | MsaT043626.1:CDS |
AGGCTACCGGTTCTTATCAT+TGG | 0.374780 | 8:+48630742 | MsaT043626.1:CDS |
CTTATGGGCGTGGAGAAGTA+TGG | 0.382631 | 8:+48631328 | MsaT043626.1:CDS |
GCTCCCGGACACATGGCTTA+TGG | 0.384505 | 8:+48631973 | MsaT043626.1:CDS |
GGACACATGGCTTATGGTAT+TGG | 0.393934 | 8:+48631979 | MsaT043626.1:CDS |
GAACCTCAAGGGCCAATTAC+CGG | 0.396923 | 8:+48631505 | MsaT043626.1:CDS |
GCAGGGTTTCCTTCTGCTCC+CGG | 0.401027 | 8:+48631958 | MsaT043626.1:CDS |
AGACGGATTGTATCTGCTTT+CGG | 0.406813 | 8:+48631931 | MsaT043626.1:CDS |
CCAGCCCCACTTGCTGGACT+CGG | 0.416423 | 8:+48631871 | MsaT043626.1:CDS |
AACAGCATCCTCGGGATGAT+TGG | 0.418808 | 8:-48630529 | None:intergenic |
TGTAGAATCGATTGCTTGCC+CGG | 0.421738 | 8:-48631524 | None:intergenic |
GATACAACCAGTCCTTCTAT+AGG | 0.426589 | 8:-48631733 | None:intergenic |
ATACATTTGCTCACTTATGA+AGG | 0.428480 | 8:+48632070 | MsaT043626.1:CDS |
ATAGGTGATATCGTGTATTC+TGG | 0.431284 | 8:-48631479 | None:intergenic |
AGAAGTATGGAAAGGGTAAA+TGG | 0.436340 | 8:+48631341 | MsaT043626.1:CDS |
CCTTGGATCGGGCAACCTAT+AGG | 0.440600 | 8:+48631907 | MsaT043626.1:CDS |
GATACAATCCGTCTTCCTAT+AGG | 0.441937 | 8:-48631922 | None:intergenic |
GCCAGGGGTACCAATGAACT+TGG | 0.443338 | 8:+48632023 | MsaT043626.1:CDS |
GTTTATGATGTGCCTTGGAT+CGG | 0.445975 | 8:+48631895 | MsaT043626.1:CDS |
CCGAGTCCAGCAAGTGGGGC+TGG | 0.451356 | 8:-48631871 | None:intergenic |
TTCTGTCCAATGATAAGAAC+CGG | 0.457832 | 8:-48630748 | None:intergenic |
CCATCGATCAACAGCATCCT+CGG | 0.458092 | 8:-48630538 | None:intergenic |
TCCTTCTGCTCCCGGACACA+TGG | 0.459304 | 8:+48631966 | MsaT043626.1:CDS |
AAAATTGCGGCTGATGTGCC+CGG | 0.461117 | 8:+48630564 | MsaT043626.1:CDS |
TTTATGATGTGCCTTGGATC+GGG | 0.462141 | 8:+48631896 | MsaT043626.1:CDS |
AGAGAGGACCAACCTATAGA+AGG | 0.463714 | 8:+48631721 | MsaT043626.1:CDS |
AATTTCTGGTTCCAGAAGGC+GGG | 0.466542 | 8:-48631837 | None:intergenic |
AAAACTCCACCACGTGGGAT+TGG | 0.467150 | 8:-48631688 | None:intergenic |
GTCATAGGACCCAAGTTCAT+TGG | 0.473573 | 8:-48632033 | None:intergenic |
CCCAAGTTCATTGGTACCCC+TGG | 0.474063 | 8:-48632024 | None:intergenic |
TATCTGCTTTCGGCGCTGCA+GGG | 0.474599 | 8:+48631941 | MsaT043626.1:CDS |
TCGGAGTTTATGATGTGCCT+TGG | 0.477536 | 8:+48631890 | MsaT043626.1:CDS |
TCTATAGGTTGGTCCTCTCT+AGG | 0.479408 | 8:-48631718 | None:intergenic |
AATCCTCTGGCTCCACCTGC+CGG | 0.481371 | 8:+48631616 | MsaT043626.1:CDS |
GTATCCGAAGTTGGCACTCC+AGG | 0.488034 | 8:+48631751 | MsaT043626.1:CDS |
CCAGGAATTCTGACTGCTCC+CGG | 0.491706 | 8:+48631769 | MsaT043626.1:CDS |
AGTTTGTGTGGCTGTTTGTC+CGG | 0.493303 | 8:-48631557 | None:intergenic |
CTAAAGAGAAGAAGGAAAGT+AGG | 0.500980 | 8:+48631452 | MsaT043626.1:CDS |
CAGGTTATTTCTTATGGGCG+TGG | 0.501373 | 8:+48631318 | MsaT043626.1:intron |
TAAATTGTTCGAAAATGCAT+TGG | 0.506339 | 8:+48630506 | MsaT043626.1:CDS |
ACAAAGCGTGCTGGTGAAAG+AGG | 0.509612 | 8:+48630699 | MsaT043626.1:CDS |
AACCTCAAGGGCCAATTACC+GGG | 0.512811 | 8:+48631506 | MsaT043626.1:CDS |
AATCAAAATAATGGATGAAG+TGG | 0.514101 | 8:+48630449 | None:intergenic |
ACTCCACCACGTGGGATTGG+AGG | 0.517874 | 8:-48631685 | None:intergenic |
AATACCATAAGCCATGTGTC+CGG | 0.520964 | 8:-48631977 | None:intergenic |
CGAGGATGCTGTTGATCGAT+GGG | 0.525087 | 8:+48630539 | MsaT043626.1:CDS |
CCGAGGATGCTGTTGATCGA+TGG | 0.525902 | 8:+48630538 | MsaT043626.1:CDS |
CAGAACTTTAAATAATCCTC+TGG | 0.528493 | 8:+48631603 | MsaT043626.1:CDS |
GAATTCAACTAAAGAGAAGA+AGG | 0.531227 | 8:+48631444 | MsaT043626.1:CDS |
GGCGTGGAGAAGTATGGAAA+GGG | 0.531559 | 8:+48631334 | MsaT043626.1:CDS |
TGGCGAAGCAGCATACATTC+CGG | 0.533982 | 8:-48631635 | None:intergenic |
AAAGTTCTGGTACCAACAGA+TGG | 0.539373 | 8:-48631589 | None:intergenic |
GCCATGTGTCCGGGAGCAGA+AGG | 0.540860 | 8:-48631967 | None:intergenic |
GTTTCTTGGACAAATATGCC+AGG | 0.542042 | 8:+48632006 | MsaT043626.1:CDS |
GCTTGAGGAGCATAAACTCC+GGG | 0.545991 | 8:-48631787 | None:intergenic |
CATCGATCAACAGCATCCTC+GGG | 0.548607 | 8:-48630537 | None:intergenic |
CATGCTCAGAAATACTTCAA+AGG | 0.551854 | 8:+48631418 | MsaT043626.1:CDS |
ATACCATAAGCCATGTGTCC+GGG | 0.552377 | 8:-48631976 | None:intergenic |
GGACTGGTTGTATCCGAAGT+TGG | 0.552531 | 8:+48631742 | MsaT043626.1:CDS |
TATGCTGCTTCGCCATCTGT+TGG | 0.563547 | 8:+48631643 | MsaT043626.1:CDS |
CCTATAGGTTGCCCGATCCA+AGG | 0.564457 | 8:-48631907 | None:intergenic |
CAAAACCAGATTCAATGTTG+TGG | 0.566485 | 8:-48630638 | None:intergenic |
GAAGCAGCATACATTCCGGC+AGG | 0.568137 | 8:-48631631 | None:intergenic |
AAATTTCTGGTTCCAGAAGG+CGG | 0.568201 | 8:-48631838 | None:intergenic |
ATTTCAGTAGGTGGAGCTTG+AGG | 0.570653 | 8:-48631802 | None:intergenic |
GGACCAACCTATAGAAGGAC+TGG | 0.574880 | 8:+48631726 | MsaT043626.1:CDS |
CAACCAGTCCTTCTATAGGT+TGG | 0.576619 | 8:-48631729 | None:intergenic |
AAGAGCTCAACAAAGCGTGC+TGG | 0.576719 | 8:+48630690 | MsaT043626.1:CDS |
AAATTTCTAGTTCCAACAGA+TGG | 0.578638 | 8:-48631655 | None:intergenic |
TGGCCCTTGAGGTTCGACAT+AGG | 0.580396 | 8:-48631497 | None:intergenic |
ATCACCTATGTCGAACCTCA+AGG | 0.586168 | 8:+48631493 | MsaT043626.1:CDS |
ATTTCTGGTTCCAGAAGGCG+GGG | 0.588808 | 8:-48631836 | None:intergenic |
AATTCCTGGAGTGCCAACTT+CGG | 0.593276 | 8:-48631755 | None:intergenic |
TTTCTTGGACAAATATGCCA+GGG | 0.593394 | 8:+48632007 | MsaT043626.1:CDS |
GCAGCATACATTCCGGCAGG+TGG | 0.596107 | 8:-48631628 | None:intergenic |
GATTCTACAGCAAATTCTGC+CGG | 0.596239 | 8:+48631538 | MsaT043626.1:CDS |
GTACCAACAGATGGAGCTTG+AGG | 0.598203 | 8:-48631580 | None:intergenic |
AAATTGCGGCTGATGTGCCC+GGG | 0.599032 | 8:+48630565 | MsaT043626.1:CDS |
TGCCCGGTAATTGGCCCTTG+AGG | 0.600641 | 8:-48631508 | None:intergenic |
ATTCCGGCAGGTGGAGCCAG+AGG | 0.603319 | 8:-48631619 | None:intergenic |
AAAGAATCATGATCTGGCAG+AGG | 0.603467 | 8:-48630663 | None:intergenic |
TCTAAATTTCTGGTTCCAGA+AGG | 0.603646 | 8:-48631841 | None:intergenic |
GGGCGTGGAGAAGTATGGAA+AGG | 0.603697 | 8:+48631333 | MsaT043626.1:CDS |
ATCAAAATAATGGATGAAGT+GGG | 0.606623 | 8:+48630450 | None:intergenic |
ACCTACTGAAATGTATGTTG+CGG | 0.608786 | 8:+48631813 | MsaT043626.1:CDS |
GCAACATACATTTCAGTAGG+TGG | 0.610815 | 8:-48631811 | None:intergenic |
ACTCCTCAAGCTCCATCTGT+TGG | 0.611272 | 8:+48631577 | MsaT043626.1:CDS |
AAACTCCGAGTCCAGCAAGT+GGG | 0.613833 | 8:-48631876 | None:intergenic |
AGCTTGAGGAGCATAAACTC+CGG | 0.627574 | 8:-48631788 | None:intergenic |
ATTGGACAGAAGACGAACAC+AGG | 0.628543 | 8:+48630760 | MsaT043626.1:CDS |
TCACCTATGTCGAACCTCAA+GGG | 0.630804 | 8:+48631494 | MsaT043626.1:CDS |
ATAGGTTGGTCCTCTCTAGG+AGG | 0.636784 | 8:-48631715 | None:intergenic |
AACTCCGAGTCCAGCAAGTG+GGG | 0.637926 | 8:-48631875 | None:intergenic |
TCGGGCAACCTATAGGAAGA+CGG | 0.645068 | 8:+48631914 | MsaT043626.1:CDS |
TGGAGCTTGAGGAGTTTGTG+TGG | 0.647801 | 8:-48631569 | None:intergenic |
CCAGGGGTACCAATGAACTT+GGG | 0.650736 | 8:+48632024 | MsaT043626.1:CDS |
GCCGCAACATACATTTCAGT+AGG | 0.662941 | 8:-48631814 | None:intergenic |
TGCATTGGCCAATCATCCCG+AGG | 0.663855 | 8:+48630521 | MsaT043626.1:CDS |
TGGGTAGTAGAAGCTATGAG+TGG | 0.665232 | 8:+48630469 | MsaT043626.1:CDS |
TTCTTGGACAAATATGCCAG+GGG | 0.665492 | 8:+48632008 | MsaT043626.1:CDS |
TAAACTCCGAGTCCAGCAAG+TGG | 0.668326 | 8:-48631877 | None:intergenic |
AATCCTCCAATCCCACGTGG+TGG | 0.678214 | 8:+48631682 | MsaT043626.1:CDS |
TGATCGATGGGAGAAAATTG+CGG | 0.690864 | 8:+48630551 | MsaT043626.1:CDS |
GGAGCGAAAACTCCACCACG+TGG | 0.691378 | 8:-48631694 | None:intergenic |
GAGCGAAAACTCCACCACGT+GGG | 0.746068 | 8:-48631693 | None:intergenic |
GGTAATCCTCCAATCCCACG+TGG | 0.762696 | 8:+48631679 | MsaT043626.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 48630459 | 48632089 | 48630459 | ID=MsaG043626 |
Chr8 | mRNA | 48630459 | 48632089 | 48630459 | ID=MsaT043626.1;Parent=MsaG043626 |
Chr8 | exon | 48630459 | 48630781 | 48630459 | ID=MsaT043626.1.exon1;Parent=MsaT043626.1 |
Chr8 | CDS | 48630459 | 48630781 | 48630459 | ID=cds.MsaT043626.1;Parent=MsaT043626.1 |
Chr8 | exon | 48631321 | 48632089 | 48631321 | ID=MsaT043626.1.exon2;Parent=MsaT043626.1 |
Chr8 | CDS | 48631321 | 48632089 | 48631321 | ID=cds.MsaT043626.1;Parent=MsaT043626.1 |
Gene Sequence |
Protein sequence |