AlfalfaGEDB | MsaG043688

M. sativa ssp. caerulea / MsaG043688

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043688	XP_039685363.1	95.688	487	20	1	1	486	186	672	0.0	887

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043688	sp\|Q9CAL8\|PEK13_ARATH	61.157	484	171	6	12	482	230	709	0.0	563

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043688	tr\|A0A072TR77\|A0A072TR77_MEDTR	95.688	487	20	1	1	486	186	672	0.0	887

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043688	MtrunA17_Chr8g0365691	95.548	292	11	2	1	290	186	477	0.0	588
MsaG043688	MtrunA17_Chr5g0413511	71.355	391	108	3	70	460	7	393	0.0	575
MsaG043688	MtrunA17_Chr7g0221191	57.516	459	172	6	3	454	281	723	2.23e-177	516
MsaG043688	MtrunA17_Chr6g0485761	58.886	377	139	2	108	476	278	646	7.19e-151	446
MsaG043688	MtrunA17_Chr0c01g0489481	53.812	446	176	6	4	438	216	642	8.00e-150	442
MsaG043688	MtrunA17_Chr3g0144481	58.475	354	129	4	99	434	55	408	1.26e-142	417
MsaG043688	MtrunA17_Chr8g0373501	60.542	332	119	3	112	432	324	654	3.33e-142	423
MsaG043688	MtrunA17_Chr8g0365701	95.408	196	9	0	291	486	20	215	3.73e-135	389
MsaG043688	MtrunA17_Chr5g0403891	61.094	329	119	3	112	432	243	570	7.70e-135	402
MsaG043688	MtrunA17_Chr6g0485721	58.632	307	125	1	113	419	86	390	2.40e-122	364

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043688	AT1G70460.1	61.157	484	171	6	12	482	230	709	0.0	563
MsaG043688	AT1G23540.1	60.412	485	160	8	18	482	247	719	0.0	554
MsaG043688	AT1G10620.1	58.178	483	183	7	5	483	250	717	0.0	537
MsaG043688	AT5G38560.1	54.585	458	180	7	14	464	235	671	1.57e-166	486
MsaG043688	AT1G70450.1	65.812	351	118	2	101	449	25	375	2.30e-160	460
MsaG043688	AT1G68690.1	54.861	432	182	4	7	438	270	688	8.56e-159	467
MsaG043688	AT1G68690.3	54.861	432	182	4	7	438	270	688	8.56e-159	467
MsaG043688	AT1G68690.2	54.861	432	182	4	7	438	270	688	8.56e-159	467
MsaG043688	AT1G26150.1	54.505	444	187	6	18	458	330	761	9.30e-159	469
MsaG043688	AT3G24550.1	58.713	373	137	2	112	475	267	631	4.27e-149	441

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Find 131 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCATGCATGCAAAATC+AGG	0.328251	8:+49742119	None:intergenic
AAAGCTATCTGAGCACTTAT+TGG	0.281181	8:-49743200	None:intergenic
AAAGGACCTCCTCCTCCTAA+GGG	0.572326	8:-49743164	None:intergenic
AAGACTCTTAAGGCTGGTAG+TGG	0.543879	8:+49743341	MsaT043688.1:CDS
AAGAGGCTAAAGATAGCTAT+TGG	0.492722	8:+49743880	MsaT043688.1:CDS
AAGCCATGCATGCAAAATCA+GGG	0.610002	8:+49742120	None:intergenic
AAGTATTCGATTTATCAAAC+GGG	0.457728	8:+49745718	MsaT043688.1:CDS
AATAATTACTTGATTTAACG+TGG	0.610901	8:-49742307	None:intergenic
AATCTTCATCATCACTTGCA+TGG	0.559533	8:+49743497	MsaT043688.1:CDS
AATGGCCTACTTTCATCAAC+TGG	0.414786	8:-49745039	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	49742125	49745971	49742125	ID=MsaG043688
Chr8	mRNA	49742125	49745971	49742125	ID=MsaT043688.1;Parent=MsaG043688
Chr8	exon	49742125	49742320	49742125	ID=MsaT043688.1.exon1;Parent=MsaT043688.1
Chr8	CDS	49742125	49742320	49742125	ID=cds.MsaT043688.1;Parent=MsaT043688.1
Chr8	exon	49743081	49743518	49743081	ID=MsaT043688.1.exon2;Parent=MsaT043688.1
Chr8	CDS	49743081	49743518	49743081	ID=cds.MsaT043688.1;Parent=MsaT043688.1
Chr8	exon	49743851	49743937	49743851	ID=MsaT043688.1.exon3;Parent=MsaT043688.1
Chr8	CDS	49743851	49743937	49743851	ID=cds.MsaT043688.1;Parent=MsaT043688.1
Chr8	exon	49744093	49744163	49744093	ID=MsaT043688.1.exon4;Parent=MsaT043688.1
Chr8	CDS	49744093	49744163	49744093	ID=cds.MsaT043688.1;Parent=MsaT043688.1
Chr8	exon	49744280	49744356	49744280	ID=MsaT043688.1.exon5;Parent=MsaT043688.1
Chr8	CDS	49744280	49744356	49744280	ID=cds.MsaT043688.1;Parent=MsaT043688.1
Chr8	exon	49744939	49745086	49744939	ID=MsaT043688.1.exon6;Parent=MsaT043688.1
Chr8	CDS	49744939	49745086	49744939	ID=cds.MsaT043688.1;Parent=MsaT043688.1
Chr8	exon	49745282	49745443	49745282	ID=MsaT043688.1.exon7;Parent=MsaT043688.1
Chr8	CDS	49745282	49745443	49745282	ID=cds.MsaT043688.1;Parent=MsaT043688.1
Chr8	exon	49745690	49745971	49745690	ID=MsaT043688.1.exon8;Parent=MsaT043688.1
Chr8	CDS	49745690	49745971	49745690	ID=cds.MsaT043688.1;Parent=MsaT043688.1

Gene Sequence

>MsaT043688.1

ATGCATGCAAAATCAGGGAGTTCTCATTCCTCTGGCCACACGCCCGGTGAAATAGCTGGTTATGCTGTTGCCGCAGTTTTGGTTGTCGCCATAGTTGCGGCAGCTGTTTTTTTTGCTTTTAGGAAGAAGAAAGCGAAAGGGGATGCATATGTTGGACCCTATATACCACCCCCTGGTAGCTTCCACGTTAAATCAAGTGCTAATGGACATTACTATGTACAGCAACCTTCCCTTGGAAACATCTATGGCAATGTGAACGTTGAAGGACGCAGCACGAAGCCCTTAGGAGGAGGAGGTCCTTTAGATCCGGCGCAGCCAATAAGTGCTCAGATAGCTTTTACTTATGACATGGTAATGGAAATAACCAACGCATTTTCTAGTCAAAATGTGATAGGGCAAGGAGGATTTGGGTGTGTTTACAAGGGTTGGCTGAAGGATGGAAAAGAAGTGGCAGTCAAGACTCTTAAGGCTGGTAGTGGGCAGGGAGATAGGGAATTCAGGGCCGAAGTGGAAATCATTAGCCGTGTTCATCATCGGCATTTGGTATCGTTGGTTGGTTATTGTATATCTGAGGAGCAAAGAGTGCTTATCTATGAGTTTGTTCCTAATGGAAATCTTCATCATCACTTGCATGGAAGTGGAATGCCAGTGTTGGCTTGGGACAAGAGGCTAAAGATAGCTATTGGTGCTGCAAAAGGCCTGGCATATCTGCATGAGGACTGCAGCCAGAAGATTATTCACAGAGATATTAAGTCCGCCAACATACTATTGGATGATGCTTTTGAAGCACAGGTTGCAGATTTCGGACTTGCAAAGCTAGCTGATGCTGCCAATACGCATGTATCAACCAGGGTTATGGGTACCTTTGGGTACATGGCTCCGGAGTATGCAACAAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACCGGAAGAAAACCAGTTGATGAAAGTAGGCCATTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGACCACAACTTATCCATGCTTTTGAGACGCGTGAGTTTGGTGAATTAGTAGACCCGAGACTAGAAAAACACTACGTGGAGAGTGAAATGTTCAGAATGATAGAGGCAGCTGCAGCTTGTGTTCGTCACTCAGCTCCTAAACGACCTCGTATGTCTCAGGTGGTAAGAGCATTAGACACTGGAGATGAAGTATTCGATTTATCAAACGGGGTGAAATATGGTCAGAGCACTGTTTATGATTCTGGACAGTATGACAAAGACATCATGTTGTTCAGGATGATGGGAAATGGCAGCTATGCTGATTCTGAATTGTCAACATACAGTAGAGAATCCAGTGTTTCAAGAGAACATTCGAGATCCCATCATGCATGGATGCACAGTGGTTCAAGTACCGAATCAGAATCAAGAGCTTTCAATAAGCATAGAAACAGTGCTGAATAA

Protein sequence

>MsaT043688.1

MHAKSGSSHSSGHTPGEIAGYAVAAVLVVAIVAAAVFFAFRKKKAKGDAYVGPYIPPPGSFHVKSSANGHYYVQQPSLGNIYGNVNVEGRSTKPLGGGGPLDPAQPISAQIAFTYDMVMEITNAFSSQNVIGQGGFGCVYKGWLKDGKEVAVKTLKAGSGQGDREFRAEVEIISRVHHRHLVSLVGYCISEEQRVLIYEFVPNGNLHHHLHGSGMPVLAWDKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAFEAQVADFGLAKLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDESRPLGDESLVEWARPQLIHAFETREFGELVDPRLEKHYVESEMFRMIEAAAACVRHSAPKRPRMSQVVRALDTGDEVFDLSNGVKYGQSTVYDSGQYDKDIMLFRMMGNGSYADSELSTYSRESSVSREHSRSHHAWMHSGSSTESESRAFNKHRNSAE*