AlfalfaGEDB | MsaG043744

M. sativa ssp. caerulea / MsaG043744

KEGG: K14498
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043744	TYI06818.1	65.611	221	30	2	13	187	63	283	1.61e-91	282

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043744	sp\|P43291\|SRK2A_ARATH	67.692	130	27	1	68	182	180	309	1.37e-55	184
MsaG043744	sp\|P43291\|SRK2A_ARATH	85.455	55	8	0	13	67	63	117	4.26e-25	104

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043744	tr\|A0A5D2NRK1\|A0A5D2NRK1_GOSTO	65.611	221	30	2	13	187	63	283	7.69e-92	282

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043744	MtrunA17_Chr8g0385281	83.824	136	7	1	68	188	181	316	3.02e-74	229
MsaG043744	MtrunA17_Chr8g0385281	89.091	55	6	0	13	67	64	118	1.06e-27	108
MsaG043744	MtrunA17_Chr3g0131061	75.556	135	18	1	68	187	180	314	1.44e-67	212
MsaG043744	MtrunA17_Chr3g0131061	85.455	55	8	0	13	67	63	117	1.05e-26	105
MsaG043744	MtrunA17_Chr2g0277501	64.539	141	35	1	68	193	180	320	4.78e-58	187
MsaG043744	MtrunA17_Chr2g0277501	81.818	55	10	0	13	67	63	117	3.40e-25	101
MsaG043744	MtrunA17_Chr8g0380661	38.683	243	75	3	11	179	61	303	8.86e-50	165
MsaG043744	MtrunA17_Chr5g0399911	54.032	124	41	2	68	175	195	318	1.28e-35	129
MsaG043744	MtrunA17_Chr5g0399911	71.930	57	16	0	11	67	76	132	6.63e-22	92.8
MsaG043744	MtrunA17_Chr4g0055451	50.735	136	47	3	68	186	181	313	5.22e-35	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043744	AT1G10940.2	67.692	130	27	1	68	182	188	317	1.34e-56	185
MsaG043744	AT1G10940.2	74.603	63	8	1	13	67	63	125	2.26e-23	97.4
MsaG043744	AT1G10940.1	67.692	130	27	1	68	182	180	309	1.39e-56	184
MsaG043744	AT1G10940.1	85.455	55	8	0	13	67	63	117	4.33e-26	104
MsaG043744	AT1G60940.1	65.926	135	31	1	68	187	180	314	1.01e-55	182
MsaG043744	AT1G60940.1	83.636	55	9	0	13	67	63	117	1.62e-25	103
MsaG043744	AT1G60940.2	65.926	135	31	1	68	187	180	314	1.01e-55	182
MsaG043744	AT1G60940.2	83.636	55	9	0	13	67	63	117	1.62e-25	103
MsaG043744	AT5G63650.1	68.939	132	26	1	69	185	181	312	4.00e-55	181
MsaG043744	AT5G63650.1	78.182	55	12	0	13	67	63	117	1.75e-23	97.4

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Find 67 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTGGGTTGCCTCTC+TGG	0.343755	8:+50467400	None:intergenic
AACACAATATGCAGCTGGAG+GGG	0.600335	8:-50468416	MsaT043744.1:CDS
AAGCTTCACCAGAGGCTTGA+TGG	0.417893	8:+50469023	None:intergenic
AAGTTGTAACAGTCGTAACA+CGG	0.596504	8:+50467245	None:intergenic
ACACTTTGAATAGAAAAGCT+TGG	0.460081	8:+50467387	None:intergenic
ACCAACGAGTCTCAGCACGC+TGG	0.701653	8:-50466335	MsaT043744.1:CDS
ACCAGCGTGCTGAGACTCGT+TGG	0.596894	8:+50466334	None:intergenic
ACCCATTATGTCATGCTAGT+TGG	0.497773	8:-50468080	MsaT043744.1:CDS
ACCGGCCTAGATACCGGAGG+AGG	0.562102	8:+50467327	None:intergenic
ACCTCCTCCGGTATCTAGGC+CGG	0.548787	8:-50467328	MsaT043744.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	50466302	50469055	50466302	ID=MsaG043744
Chr8	mRNA	50466302	50469055	50466302	ID=MsaT043744.1;Parent=MsaG043744
Chr8	exon	50466302	50466410	50466302	ID=MsaT043744.1.exon7;Parent=MsaT043744.1
Chr8	CDS	50466302	50466410	50466302	ID=cds.MsaT043744.1;Parent=MsaT043744.1
Chr8	exon	50467255	50467466	50467255	ID=MsaT043744.1.exon6;Parent=MsaT043744.1
Chr8	CDS	50467255	50467466	50467255	ID=cds.MsaT043744.1;Parent=MsaT043744.1
Chr8	exon	50467834	50467932	50467834	ID=MsaT043744.1.exon5;Parent=MsaT043744.1
Chr8	CDS	50467834	50467932	50467834	ID=cds.MsaT043744.1;Parent=MsaT043744.1
Chr8	exon	50468025	50468129	50468025	ID=MsaT043744.1.exon4;Parent=MsaT043744.1
Chr8	CDS	50468025	50468129	50468025	ID=cds.MsaT043744.1;Parent=MsaT043744.1
Chr8	exon	50468225	50468278	50468225	ID=MsaT043744.1.exon3;Parent=MsaT043744.1
Chr8	CDS	50468225	50468278	50468225	ID=cds.MsaT043744.1;Parent=MsaT043744.1
Chr8	exon	50468369	50468470	50468369	ID=MsaT043744.1.exon2;Parent=MsaT043744.1
Chr8	CDS	50468369	50468470	50468369	ID=cds.MsaT043744.1;Parent=MsaT043744.1
Chr8	exon	50469011	50469055	50469011	ID=MsaT043744.1.exon1;Parent=MsaT043744.1
Chr8	CDS	50469011	50469055	50469011	ID=cds.MsaT043744.1;Parent=MsaT043744.1

Gene Sequence

>MsaT043744.1

ATGAATTGCACCATCAAGCCTCTGGTGAAGCTTGGCTTTCTCGAGGTGGTTTTGACCCCTAATCATTTAGCAATAGTAACACAATATGCAGCTGGAGGGGAACTCTTTGAGAGGACCTGTAATGCTGGTCGGTTCAGCGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATATCTGGTGTCTATTACTGTCATGCTATGTTGGCTGATGTGTGGTCCTGTGGAGTGACCCATTATGTCATGCTAGTTGGAGCATATCCCTTTGAGGATCGGGATGACCCTAGAAATTTTATGAAAACAATCCAGCTCATAATGGCTCTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATCGCAAAAGCCTCCTATCTCGTATATTTGTTGCTAATCCATTAAGGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTGCATATTACCAGAGAGGCAACCCAAGCTTTTCTATTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAGAACCTCCTCCGGTATCTAGGCCGGTCAAAGGTTTTGGCTGGGAATGTGAAGAAAAAGAACACCTTGTTACGACTGCTCAAAACCCCGTGTTACGACTGTATATCAAACCATCAAGGCCTAGGCATTTAGTGTTGAAGTCACCATCACGAAACCAACGAGTCTCAGCACGCTGGTGTCGAAAAGCATCTTCCTGCACTGGGAAATGA

Protein sequence

>MsaT043744.1

MNCTIKPLVKLGFLEVVLTPNHLAIVTQYAAGGELFERTCNAGRFSEDEARYFFQQLISGVYYCHAMLADVWSCGVTHYVMLVGAYPFEDRDDPRNFMKTIQLIMALQYKIPDYVHISQDRKSLLSRIFVANPLRNLPRELTESAQAAYYQRGNPSFSIQSVDEIMKIVGEAREPPPVSRPVKGFGWECEEKEHLVTTAQNPVLRLYIKPSRPRHLVLKSPSRNQRVSARWCRKASSCTGK*