AlfalfaGEDB | MsaG043750

M. sativa ssp. caerulea / MsaG043750

KEGG: -
GO: GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043750	XP_024627494.1	92.635	353	23	1	1	350	1	353	0.0	611

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043750	sp\|Q9C616\|KAN2_ARATH	49.750	400	137	15	1	349	1	387	8.06e-86	267

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043750	tr\|G7LGX4\|G7LGX4_MEDTR	92.113	355	23	2	1	350	1	355	0.0	606

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TFs/TRs:

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Gene ID	Type	Classification
MsaG043750	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043750	MtrunA17_Chr8g0366281	92.113	355	23	2	1	350	1	355	0.0	606
MsaG043750	MtrunA17_Chr5g0410741	58.477	407	101	15	1	347	1	399	2.25e-124	363
MsaG043750	MtrunA17_Chr3g0109981	49.065	214	70	7	154	347	258	452	2.41e-50	174
MsaG043750	MtrunA17_Chr6g0479431	48.000	200	82	7	154	347	184	367	1.82e-41	148
MsaG043750	MtrunA17_Chr1g0154261	84.722	72	11	0	165	236	121	192	1.03e-35	131
MsaG043750	MtrunA17_Chr7g0243081	44.737	114	59	1	131	244	36	145	2.13e-24	102
MsaG043750	MtrunA17_Chr1g0162931	67.241	58	19	0	169	226	17	74	6.46e-22	94.0
MsaG043750	MtrunA17_Chr1g0210911	65.517	58	20	0	169	226	21	78	1.49e-21	94.0
MsaG043750	MtrunA17_Chr8g0379121	62.295	61	23	0	169	229	110	170	1.23e-19	89.4
MsaG043750	MtrunA17_Chr2g0320231	63.934	61	22	0	169	229	96	156	1.62e-19	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043750	AT1G32240.1	49.750	400	137	15	1	349	1	387	8.19e-87	267
MsaG043750	AT1G32240.2	49.854	343	117	13	1	297	1	334	5.49e-80	249
MsaG043750	AT4G17695.1	39.024	369	150	13	1	347	1	316	3.57e-57	189
MsaG043750	AT5G16560.1	45.192	208	86	5	154	347	203	396	1.26e-45	160
MsaG043750	AT5G42630.2	77.333	75	17	0	165	239	100	174	3.36e-35	128
MsaG043750	AT5G42630.1	79.452	73	15	0	165	237	100	172	1.09e-34	128
MsaG043750	AT1G32240.3	54.967	151	51	4	205	349	1	140	3.08e-34	123
MsaG043750	AT2G38300.1	40.288	139	69	4	155	290	43	170	4.26e-22	95.9
MsaG043750	AT4G04605.1	65.574	61	21	0	169	229	13	73	6.63e-22	92.8
MsaG043750	AT1G14600.1	69.492	59	18	0	170	228	23	81	2.83e-21	92.0

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Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTAAGTGAAGAGTTA+GGG	0.427487	8:-50556911	MsaT043750.1:CDS
AACAAAGCGATTATGAAGAG+TGG	0.613873	8:+50556683	None:intergenic
AACAGGGAAGCTTGGTTGCA+TGG	0.521093	8:-50553215	MsaT043750.1:intron
AACGAAAGATATTCCTCAGA+TGG	0.530234	8:-50551702	MsaT043750.1:CDS
AAGACACATTTCCAACAGGA+TGG	0.611319	8:+50553180	None:intergenic
AAGCCAAAGGTCCATCCTGT+TGG	0.539624	8:-50553191	MsaT043750.1:CDS
AAGCTTAAAGAATCCAAATT+TGG	0.223420	8:-50551652	MsaT043750.1:CDS
AATAATGCAATAGAAGGATT+AGG	0.317571	8:+50556846	None:intergenic
AATGATAAATCTAGTTGTGC+TGG	0.487533	8:+50557200	None:intergenic
ACAGCAAACAAACATCAAGT+TGG	0.580847	8:-50557160	MsaT043750.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	50551626	50557234	50551626	ID=MsaG043750
Chr8	mRNA	50551626	50557234	50551626	ID=MsaT043750.1;Parent=MsaG043750
Chr8	exon	50551626	50551748	50551626	ID=MsaT043750.1.exon6;Parent=MsaT043750.1
Chr8	CDS	50551626	50551748	50551626	ID=cds.MsaT043750.1;Parent=MsaT043750.1
Chr8	exon	50553172	50553232	50553172	ID=MsaT043750.1.exon5;Parent=MsaT043750.1
Chr8	CDS	50553172	50553232	50553172	ID=cds.MsaT043750.1;Parent=MsaT043750.1
Chr8	exon	50554642	50554804	50554642	ID=MsaT043750.1.exon4;Parent=MsaT043750.1
Chr8	CDS	50554642	50554804	50554642	ID=cds.MsaT043750.1;Parent=MsaT043750.1
Chr8	exon	50554922	50554967	50554922	ID=MsaT043750.1.exon3;Parent=MsaT043750.1
Chr8	CDS	50554922	50554967	50554922	ID=cds.MsaT043750.1;Parent=MsaT043750.1
Chr8	exon	50556391	50556467	50556391	ID=MsaT043750.1.exon2;Parent=MsaT043750.1
Chr8	CDS	50556391	50556467	50556391	ID=cds.MsaT043750.1;Parent=MsaT043750.1
Chr8	exon	50556652	50557234	50556652	ID=MsaT043750.1.exon1;Parent=MsaT043750.1
Chr8	CDS	50556652	50557234	50556652	ID=cds.MsaT043750.1;Parent=MsaT043750.1

Gene Sequence

>MsaT043750.1

ATGGAGCTATTCCCAGCACAACTAGATTTATCATTGCAAATCAGTCTTCCAAACAGCAAACAAACATCAAGTTGGAGGAGAAATACAGATGATCAAGATGAGTTGGATGATTTAGGATTCTGGAAAAGAGCTTTGGAGTCAAGAACAGAAGCAAATCACACCTTTAACCCTTCTCTTTCCAATCTAAGGGCTCCTTCTTCTTCTTCAAACCTCTACAATCTCATACCTAACCCTTTTCAAAACACTAATAATTCCAACAATAACTCTTTTCAACCATTTCATCAAAACCAAAACAATTACCAAAGCTTAAGTGAAGAGTTAGGGTTTCTCAAACCTATTAGAGGAATTCCAGTGTATCATCAAAACCCTAATCCTTCTATTGCATTATTTTCTCAGCCACAACCACTCTTTGATGCTTCTGCTTCAAGTTCATCAACAGCTTTTCATTCTCATACTTCGATGAGATCAAAGTTGTTGCCGCGGTTTCCTTCAAAGCGCAGCGTGAGAGCTCCGAGGATGCGTTGGACTACCACTCTTCATAATCGCTTTGTTCATGCTGTTGAACTTTTGGGTGGCCATGAAAGAGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTAACCTTATCACATGTTAAATCTCATTTGCAGATGTACCGGACGGTGAAAATTACAGATAGACCACCAGCATCATCAGGTCAATCTGATATGTATGACAATGGTTCATCTGGAGATACTTCTGAAGACTTCATGTTTGACATAAATTCTTCAACAAGGTCTAATGATCTGCCAGTTAAGTTGGATGCAGAAATCCCTAATCAAGATAAAGAAAAACATAGCATTTGGAGCAAATCTTCCAGGGAAGCTTGGTTGCATGGTAAGCCAAAGGTCCATCCTGTTGGAAATGTGTCTTCTCTTGAGGAAATGGATCCAAAGTGTGTAAGCAACGAAAGATATTCCTCAGATGGGAGCTCTTCCTCAAACATTTCGGGAACAAGCTTAAAGAATCCAAATTTGGAATTCACATTAGGCAACTCAGTTTGA

Protein sequence

>MsaT043750.1

MELFPAQLDLSLQISLPNSKQTSSWRRNTDDQDELDDLGFWKRALESRTEANHTFNPSLSNLRAPSSSSNLYNLIPNPFQNTNNSNNNSFQPFHQNQNNYQSLSEELGFLKPIRGIPVYHQNPNPSIALFSQPQPLFDASASSSSTAFHSHTSMRSKLLPRFPSKRSVRAPRMRWTTTLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRTVKITDRPPASSGQSDMYDNGSSGDTSEDFMFDINSSTRSNDLPVKLDAEIPNQDKEKHSIWSKSSREAWLHGKPKVHPVGNVSSLEEMDPKCVSNERYSSDGSSSSNISGTSLKNPNLEFTLGNSV*