AlfalfaGEDB | MsaG043813

M. sativa ssp. caerulea / MsaG043813

KEGG: K13425
GO: GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019932 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033993 GO:0035556 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043813	AET03325.1	64.249	193	18	1	1	142	243	435	3.67e-72	236

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043813	sp\|O04609\|WRK22_ARATH	34.694	147	66	8	16	155	63	186	2.13e-11	63.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043813	tr\|G7LIF9\|G7LIF9_MEDTR	64.249	193	18	1	1	142	243	435	1.75e-72	236

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TFs/TRs:

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Gene ID	Type	Classification
MsaG043813	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043813	MtrunA17_Chr8g0366921	88.462	78	9	0	1	78	243	320	3.15e-42	143
MsaG043813	MtrunA17_Chr6g0470151	42.373	118	54	2	1	118	248	351	6.77e-19	82.0
MsaG043813	MtrunA17_Chr2g0289181	34.884	129	34	1	84	162	1	129	4.34e-17	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043813	AT4G01250.1	34.694	147	66	8	16	155	63	186	2.17e-12	63.9

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Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTGATTCTCCTAATG+TGG	0.514826	8:+51578662	MsaT043813.1:CDS
AAAGTTGTAGAACTGGTTTG+GGG	0.727319	8:-51577156	None:intergenic
AAATAATAACCAAGTGACAT+TGG	0.536349	8:+51577354	MsaT043813.1:CDS
AATGCTCGTTGAACAACAAC+AGG	0.486815	8:+51576990	None:intergenic
ACTCGAGCCTTGCTGCTCTC+TGG	0.411380	8:-51578705	None:intergenic
AGCAAGGCTCGAGTTCATGA+TGG	0.606224	8:+51578714	MsaT043813.1:CDS
AGTCGATTATGATTTCTCTG+GGG	0.721816	8:-51577120	None:intergenic
ATAAGATTTCAGAAGATTCA+TGG	0.343013	8:+51577395	MsaT043813.1:CDS
ATTCAGTAAAGTTGTAGAAC+TGG	0.405398	8:-51577163	None:intergenic
CAGAATATGTCATCAAATTC+AGG	0.324509	8:+51578597	MsaT043813.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	51576991	51578743	51576991	ID=MsaG043813
Chr8	mRNA	51576991	51578743	51576991	ID=MsaT043813.1;Parent=MsaG043813
Chr8	exon	51576991	51577223	51576991	ID=MsaT043813.1.exon1;Parent=MsaT043813.1
Chr8	CDS	51576991	51577223	51576991	ID=cds.MsaT043813.1;Parent=MsaT043813.1
Chr8	exon	51577351	51577467	51577351	ID=MsaT043813.1.exon2;Parent=MsaT043813.1
Chr8	CDS	51577351	51577467	51577351	ID=cds.MsaT043813.1;Parent=MsaT043813.1
Chr8	exon	51578593	51578743	51578593	ID=MsaT043813.1.exon3;Parent=MsaT043813.1
Chr8	CDS	51578593	51578743	51578593	ID=cds.MsaT043813.1;Parent=MsaT043813.1

Gene Sequence

>MsaT043813.1

ATGCTCGTTGAACAACAACAGGTTCAAGCAAACCAAAATCGAGTGTCTGTTTTCGACTCTATTTCCTGCATTAAGACTACAACCACCAATTTTCATCCTGAACTCAACCATCCATTAGAACCACAAGAACCCCAGAGAAATCATAATCGACTACCGATTCTACTACCCCAAACCAGTTCTACAACTTTACTGAATACAAAACCGAAACAACAAAAATTTAAACCAGGAAAAAGAAAAAATAATAACCAAGTGACATTGGTGAGCTATGTGAAGGCAGATAAGATTTCAGAAGATTCATGGAGATGGAGAAAATATGGACAAAAACCCATTAAAGGGTCTCCACATCCAAGCTCCCAGAATATGTCATCAAATTCAGGATTAGATGGTGTCCGAGAAGCTGGATGTTGCTCAAACGTTAGAAACTTTGATTCTCCTAATGTGGTAATGTTGCAGCATGATCATCCAGAGAGCAGCAAGGCTCGAGTTCATGATGGTGAATAA

Protein sequence

>MsaT043813.1

MLVEQQQVQANQNRVSVFDSISCIKTTTTNFHPELNHPLEPQEPQRNHNRLPILLPQTSSTTLLNTKPKQQKFKPGKRKNNNQVTLVSYVKADKISEDSWRWRKYGQKPIKGSPHPSSQNMSSNSGLDGVREAGCCSNVRNFDSPNVVMLQHDHPESSKARVHDGE*