AlfalfaGEDB | MsaG043836

M. sativa ssp. caerulea / MsaG043836

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009838 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010227 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043836	XP_003628883.1	97.640	339	6	2	1	338	1	338	0.0	679

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043836	sp\|Q9LSL6\|DOF57_ARATH	37.571	354	149	14	4	338	16	316	3.29e-55	186

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043836	tr\|G7LIJ3\|G7LIJ3_MEDTR	97.640	339	6	2	1	338	1	338	0.0	679

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TFs/TRs:

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Gene ID	Type	Classification
MsaG043836	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000045	MsaG043836	0.806714	1.220342e-49	1.926053e-47
MsaG000083	MsaG043836	0.806423	1.404581e-49	2.201751e-47
MsaG000353	MsaG043836	0.803224	6.494836e-49	9.449839e-47
MsaG000534	MsaG043836	0.825099	1.000514e-53	2.523643e-51
MsaG000643	MsaG043836	0.814427	2.675849e-51	5.098682e-49
MsaG000976	MsaG043836	0.831083	3.679209e-55	1.098331e-52
MsaG001161	MsaG043836	0.822704	3.622272e-53	8.560974e-51
MsaG001196	MsaG043836	0.805572	2.116705e-49	3.251929e-47
MsaG001286	MsaG043836	0.838758	4.375448e-57	1.643052e-54
MsaG001367	MsaG043836	0.801169	1.712179e-48	2.376838e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043836	MtrunA17_Chr8g0367161	97.640	339	6	2	1	338	1	338	0.0	679
MsaG043836	MtrunA17_Chr5g0411951	50.296	338	93	16	32	338	43	336	3.29e-76	237
MsaG043836	MtrunA17_Chr2g0328021	51.181	127	50	4	12	127	40	165	4.42e-32	121
MsaG043836	MtrunA17_Chr4g0047001	68.493	73	23	0	33	105	56	128	9.44e-32	122
MsaG043836	MtrunA17_Chr8g0374251	66.667	78	25	1	32	108	68	145	4.12e-31	120
MsaG043836	MtrunA17_Chr4g0031411	75.758	66	13	1	31	93	74	139	4.18e-30	117
MsaG043836	MtrunA17_Chr7g0223311	56.044	91	30	1	16	96	51	141	1.43e-29	116
MsaG043836	MtrunA17_Chr8g0346551	70.000	70	19	1	21	90	15	82	6.41e-29	112
MsaG043836	MtrunA17_Chr4g0030051	42.941	170	75	6	28	187	37	194	1.03e-28	112
MsaG043836	MtrunA17_Chr3g0127201	69.697	66	20	0	21	86	16	81	1.28e-28	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043836	AT5G65590.1	37.571	354	149	14	4	338	16	316	3.34e-56	186
MsaG043836	AT5G60200.1	47.059	119	53	2	14	122	35	153	3.69e-31	118
MsaG043836	AT1G51700.1	62.821	78	28	1	32	109	33	109	4.46e-31	116
MsaG043836	AT2G37590.1	75.000	60	15	0	29	88	86	145	4.56e-30	117
MsaG043836	AT5G60850.1	60.759	79	31	0	32	110	51	129	1.97e-29	115
MsaG043836	AT3G52440.1	59.551	89	29	1	29	110	22	110	2.61e-29	113
MsaG043836	AT1G07640.1	81.818	55	10	0	32	86	21	75	3.27e-29	114
MsaG043836	AT3G52440.2	59.551	89	29	1	29	110	41	129	4.95e-29	113
MsaG043836	AT3G45610.1	61.538	78	29	1	9	86	18	94	5.04e-29	112
MsaG043836	AT1G07640.2	81.818	55	10	0	32	86	77	131	5.13e-29	114

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Find 61 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACAACTGGATTAATAA+TGG	0.361191	8:+51864455	MsaT043836.1:CDS
AACCAATTCTCTTCCATTGG+TGG	0.456714	8:+51863900	MsaT043836.1:CDS
AAGAACCAAGATGAAAATCA+AGG	0.498393	8:-51863830	None:intergenic
AAGGCTGAGATGTTTCAAGT+TGG	0.583200	8:+51864296	MsaT043836.1:CDS
AAGGGTAATGATAAAGGTAA+GGG	0.574636	8:-51863855	None:intergenic
AATAATGGTGTTCATGCTTG+GGG	0.619834	8:+51864470	MsaT043836.1:CDS
AATCCACCTCCATTTGAAGA+AGG	0.498975	8:-51864008	None:intergenic
AATGGAGGTGGATTTATTAA+TGG	0.224509	8:+51864017	MsaT043836.1:CDS
AATGGTGATCATGATCAAAA+TGG	0.333621	8:+51864431	MsaT043836.1:CDS
AATTTAAACCATTTGGATCA+AGG	0.394686	8:-51863974	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	51863516	51864532	51863516	ID=MsaG043836
Chr8	mRNA	51863516	51864532	51863516	ID=MsaT043836.1;Parent=MsaG043836
Chr8	exon	51863516	51864532	51863516	ID=MsaT043836.1.exon1;Parent=MsaT043836.1
Chr8	CDS	51863516	51864532	51863516	ID=cds.MsaT043836.1;Parent=MsaT043836.1

Gene Sequence

>MsaT043836.1

ATGGTGGCACCAAATCACAAAAACACACAAGATCATGAAAACCAACAAGGTTCTTCTTCTGAAACCAAGATAACAGATCAACAAAAAGTTGTAGTAAAATGTCCAAGATGTGATTCTCCAAACACAAAATTCTGTTACTACAACAACTACAGTCTCACTCAACCAAGACATTTCTGCAAAACATGCAGAAGATATTGGACAAATGGTGGATCGTTGCGTAACGTTCCGATAGGTGGTGGTTGTAGAAAGAAACAAAAACTCAAACACTCATCTACACCATCTCAAGCCATTAATAAGTACTCTTCTTCACCTTCCCTTGATTTTCATCTTGGTTCTTTACCCTTACCTTTATCATTACCCTTCTCTTCAAAACCATTTTACTATAACCAATTCTCTTCCATTGGTGGAGTTTCAAGTTCAAACACTTGTGTTTCTACTACAAGTGCTTCAAGTTTTCACCTTGATCCAAATGGTTTAAATTTATATCCTTTCCCTTCTTCAAATGGAGGTGGATTTATTAATGGTGGAAATGAAAATGCAATTCAAGGAATGAACTTTATGAATGTGAGTACTAGTGCTAATAATGCTAATTGCACTAGTCTTGCTTCTAGTATTGAATCATTGAGTTGTAGGAACCAGGATTTGCATTTGAAGCTTCAGCAGCAGAGATTAGCAACCTTGTTTGAAGATAATAACAGGAAAGAGAGTGGAACTGTTTTGCTTTCTCAGGTTAGCATTGAAAAGCCTCAACCTATTTTGTTTCAGAATCTTGAGATTTCAAAGGCTGAGATGTTTCAAGTTGGTGGTGGTGCTGGTGATTCAAGGAAAGAAGGTGCAAGTGAATGGTTCTTTGGTATGAATTCTTATTCATCAGTGATGGCTCCTGCAACAACTACTGATCTTAGTGTTTGCATTAATGGTGATCATGATCAAAATGGAAACAACAACTGGATTAATAATGGTGTTCATGCTTGGGGTGATGTGCAGCAGCAGCAGCCATATACTGCTTTGCCCTAA

Protein sequence

>MsaT043836.1

MVAPNHKNTQDHENQQGSSSETKITDQQKVVVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKLKHSSTPSQAINKYSSSPSLDFHLGSLPLPLSLPFSSKPFYYNQFSSIGGVSSSNTCVSTTSASSFHLDPNGLNLYPFPSSNGGGFINGGNENAIQGMNFMNVSTSANNANCTSLASSIESLSCRNQDLHLKLQQQRLATLFEDNNRKESGTVLLSQVSIEKPQPILFQNLEISKAEMFQVGGGAGDSRKEGASEWFFGMNSYSSVMAPATTTDLSVCINGDHDQNGNNNWINNGVHAWGDVQQQQPYTALP*