AlfalfaGEDB | MsaG043843

M. sativa ssp. caerulea / MsaG043843

KEGG: K04733
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0032870 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043843	XP_013446080.1	97.921	481	9	1	1	480	1	481	0.0	973

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043843	sp\|Q8H1D6\|RBK1_ARATH	62.500	400	137	5	83	479	78	467	0.0	525

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043843	tr\|A0A072TRR5\|A0A072TRR5_MEDTR	97.921	481	9	1	1	480	1	481	0.0	973

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043843	MtrunA17_Chr8g0367241	97.921	481	9	1	1	480	1	481	0.0	973
MsaG043843	MtrunA17_Chr5g0412141	65.451	466	132	7	25	479	5	452	0.0	599
MsaG043843	MtrunA17_Chr2g0286821	45.824	443	217	8	41	478	17	441	3.65e-131	387
MsaG043843	MtrunA17_Chr1g0196381	52.584	329	148	4	125	448	74	399	3.61e-117	350
MsaG043843	MtrunA17_Chr4g0072221	52.805	303	137	4	140	440	41	339	2.61e-108	326
MsaG043843	MtrunA17_Chr4g0072891	52.000	300	136	4	139	432	237	534	3.48e-107	330
MsaG043843	MtrunA17_Chr1g0191381	42.012	338	172	6	47	382	54	369	5.96e-84	264
MsaG043843	MtrunA17_Chr1g0159711	45.485	299	151	4	149	439	339	633	4.98e-77	254
MsaG043843	MtrunA17_Chr3g0125281	45.361	291	147	4	153	435	396	682	5.06e-74	248
MsaG043843	MtrunA17_Chr6g0485761	40.233	343	179	8	152	478	282	614	4.79e-73	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043843	AT5G65530.1	61.765	442	145	8	48	479	29	456	0.0	535
MsaG043843	AT5G10520.1	62.500	400	137	5	83	479	78	467	0.0	525
MsaG043843	AT5G10520.2	66.890	299	87	4	83	378	78	367	1.52e-143	416
MsaG043843	AT5G18910.1	46.959	411	198	7	76	478	108	506	2.18e-127	380
MsaG043843	AT5G35960.1	46.287	404	197	6	46	448	31	415	1.43e-119	357
MsaG043843	AT5G35960.2	47.135	384	183	6	46	428	31	395	2.97e-117	350
MsaG043843	AT3G05140.1	47.619	399	189	8	86	478	74	458	7.14e-114	343
MsaG043843	AT3G05140.2	47.619	399	189	8	86	478	122	506	1.57e-113	344
MsaG043843	AT2G18890.1	50.329	304	147	3	137	437	40	342	9.12e-106	320
MsaG043843	AT2G18890.3	50.847	295	141	3	137	428	40	333	9.16e-104	313

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Find 117 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCATCACCAGGAGG+AGG	0.609049	8:+51997380	MsaT043843.1:CDS
AAAGGGAGAAGAGGTAGCAA+TGG	0.606974	8:+51999893	MsaT043843.1:CDS
AAAGTGGCTTCCAGATAAAT+GGG	0.487471	8:+51998985	MsaT043843.1:CDS
AAATTTCTAGGAAGAATTTG+CGG	0.551450	8:+51997498	MsaT043843.1:CDS
AACCCGAATGTGCCTTCTAT+TGG	0.292060	8:-51999025	None:intergenic
AAGAAAAGAAAGAAAAGAGA+TGG	0.478465	8:+51997192	MsaT043843.1:CDS
AAGGAAGCTGGAGACAGAGC+TGG	0.530068	8:+51998420	MsaT043843.1:CDS
AAGGTTCAAGGTAGCAGTTG+GGG	0.637122	8:+51998746	MsaT043843.1:CDS
AATAATCCAAAGAAAGAGTT+TGG	0.306950	8:+51997245	MsaT043843.1:CDS
AATGTTTGGCGTGGAATATA+AGG	0.385110	8:+51998727	MsaT043843.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	51997164	52000040	51997164	ID=MsaG043843
Chr8	mRNA	51997164	52000040	51997164	ID=MsaT043843.1;Parent=MsaG043843
Chr8	exon	51997164	51997665	51997164	ID=MsaT043843.1.exon1;Parent=MsaT043843.1
Chr8	CDS	51997164	51997665	51997164	ID=cds.MsaT043843.1;Parent=MsaT043843.1
Chr8	exon	51998325	51998582	51998325	ID=MsaT043843.1.exon2;Parent=MsaT043843.1
Chr8	CDS	51998325	51998582	51998325	ID=cds.MsaT043843.1;Parent=MsaT043843.1
Chr8	exon	51998721	51998872	51998721	ID=MsaT043843.1.exon3;Parent=MsaT043843.1
Chr8	CDS	51998721	51998872	51998721	ID=cds.MsaT043843.1;Parent=MsaT043843.1
Chr8	exon	51998965	51999044	51998965	ID=MsaT043843.1.exon4;Parent=MsaT043843.1
Chr8	CDS	51998965	51999044	51998965	ID=cds.MsaT043843.1;Parent=MsaT043843.1
Chr8	exon	51999138	51999276	51999138	ID=MsaT043843.1.exon5;Parent=MsaT043843.1
Chr8	CDS	51999138	51999276	51999138	ID=cds.MsaT043843.1;Parent=MsaT043843.1
Chr8	exon	51999439	51999588	51999439	ID=MsaT043843.1.exon6;Parent=MsaT043843.1
Chr8	CDS	51999439	51999588	51999439	ID=cds.MsaT043843.1;Parent=MsaT043843.1
Chr8	exon	51999879	52000040	51999879	ID=MsaT043843.1.exon7;Parent=MsaT043843.1
Chr8	CDS	51999879	52000040	51999879	ID=cds.MsaT043843.1;Parent=MsaT043843.1

Gene Sequence

>MsaT043843.1

ATGGAGAGATTAAGGAACAAATGGGATCAAGAAAAGAAAGAAAAGAGATGGAGAATGGTCGATATGATAACGGGTAATAACAATAATCCAAAGAAAGAGTTTGGTTTTGCAAATGAAAACAACAATGATTCACCAACAGCATCACCAAGAGGTGTATTTGAGGTACCAATTTCGGATTCCGACAGCACGGGGAGCAGCAACTACAGCAATGGAGGGAAACCATCATCACCAGGAGGAGGAGATGGAGGGCACCAATGGAAGGCTATGATTGATGCATTGAGGTTTAAGTCTGTGAGGAGATTTTCTACCATTCCTTTGCTTGCTGCTAGCTATGAAATTTCTAGGAAGAATTTGCGGAACAAGTTGGCCCGTAAAAGAACAGCTAATGATGAAGATGAGAATTTTTTTGATGGTGCTTTTGATCTTGATGGTATTACAAAGCCTTCTTGGAGAAACTTTAGTTATGAAGATCTTGTTGCTGCAACTGACAATTTCAATCCTGAGAACATGATTGGAAAAGGTGGTCATGCAGAAGTGTACCAAGGACGCTTACCTGATGGAATGGTTGTAGCAGTAAAGAGGCTAATGAACACTGAGAAGGAAGCTGGAGACAGAGCTGGTGATTTCTTGTCGGAGCTTGGGATTATTGCTCACATTAACCACCCAAATGCAACACGTCTTATCGGTTTTGGAATTGATCGTGGCCTCTATTTTGTTCTTCAATTCGCCTCACATGGAAGCCTTTCCTCTTTGCTCTTCGGCTCTGAATGTTTGGCGTGGAATATAAGGTTCAAGGTAGCAGTTGGGGTAGCCAAAGGTTTGCAATATCTCCATCAAGATTGTCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCAACTATGATGATGAAGCCGAGATTTCAGATTTTGGATTGGCAAAGTGGCTTCCAGATAAATGGGCACATCATGTTGTATTCCCAATAGAAGGCACATTCGGGTATTTGGCTCCAGAGTATTTCATGCATGGACTTGTGGATGAGAAGACTGATGTTTTTGCATTTGGGGTATTGTTACTTGAACTCTTGACAGGTCGTCGTGCGGTTGATTCAAATAGCAAGCAAAGTCTTGTGATTTGGGCTAAACCACTATTGGACGCAAAGCAAGTGAAAGAAATAGCAGACCCAAGATTAGGAGAGCAATATGATCCAATTGAAATGAAGCTAGTCATGGCAACAGCTTCCAGATGTATCCACCACATGTCCTCTAAAAGGCCATTCATGGATCAGGTTGTGCTACTACTAAAGGGAGAAGAGGTAGCAATGGACCTCACTCAAAAAACAATAGCTCCAAGGTCACTCTTGTTAGATGCTTGTGATTTAGAAGACTATACTTGTTCTAATTATTTGAATGATCTCAATCGCCACAAGCAATTAATCATGGAGATATGA

Protein sequence

>MsaT043843.1

MERLRNKWDQEKKEKRWRMVDMITGNNNNPKKEFGFANENNNDSPTASPRGVFEVPISDSDSTGSSNYSNGGKPSSPGGGDGGHQWKAMIDALRFKSVRRFSTIPLLAASYEISRKNLRNKLARKRTANDEDENFFDGAFDLDGITKPSWRNFSYEDLVAATDNFNPENMIGKGGHAEVYQGRLPDGMVVAVKRLMNTEKEAGDRAGDFLSELGIIAHINHPNATRLIGFGIDRGLYFVLQFASHGSLSSLLFGSECLAWNIRFKVAVGVAKGLQYLHQDCPRRIIHRDIKASNILLNYDDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELLTGRRAVDSNSKQSLVIWAKPLLDAKQVKEIADPRLGEQYDPIEMKLVMATASRCIHHMSSKRPFMDQVVLLLKGEEVAMDLTQKTIAPRSLLLDACDLEDYTCSNYLNDLNRHKQLIMEI*