AlfalfaGEDB | MsaG043876

M. sativa ssp. caerulea / MsaG043876

KEGG: K13425
GO: GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019932 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033993 GO:0035556 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043876	KEH20096.1	57.895	456	156	5	7	427	47	501	1.10e-137	416

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043876	sp\|O04609\|WRK22_ARATH	36.500	200	107	5	172	370	19	199	9.24e-24	103

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043876	tr\|A0A072TSA8\|A0A072TSA8_MEDTR	57.895	456	156	5	7	427	47	501	5.25e-138	416

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TFs/TRs:

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Gene ID	Type	Classification
MsaG043876	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043876	MtrunA17_Chr8g0366921	64.138	290	89	2	1	279	35	320	3.77e-74	235
MsaG043876	MtrunA17_Chr6g0470151	44.548	321	155	6	7	321	50	353	5.09e-53	182
MsaG043876	MtrunA17_Chr2g0289181	56.643	143	62	0	285	427	1	143	1.12e-46	160
MsaG043876	MtrunA17_Chr8g0368721	48.421	285	120	5	7	279	43	312	1.66e-35	133
MsaG043876	MtrunA17_Chr1g0202461	55.000	100	43	2	275	374	239	336	2.22e-28	115
MsaG043876	MtrunA17_Chr8g0348311	48.413	126	53	3	268	391	134	249	6.92e-26	107
MsaG043876	MtrunA17_Chr7g0248691	46.875	128	51	3	243	370	115	225	7.48e-24	101
MsaG043876	MtrunA17_Chr2g0293901	50.769	130	50	2	15	144	54	169	1.90e-23	97.8
MsaG043876	MtrunA17_Chr8g0387501	62.500	72	26	1	299	370	130	200	1.99e-22	96.7
MsaG043876	MtrunA17_Chr7g0266621	40.830	289	134	4	3	279	39	302	2.38e-22	97.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG043876	AT4G01250.1	36.500	200	107	5	172	370	19	199	9.39e-25	103
MsaG043876	AT5G52830.1	53.125	96	43	2	275	370	143	236	1.01e-23	102
MsaG043876	AT4G23550.1	51.685	89	42	1	282	370	124	211	7.48e-23	99.0
MsaG043876	AT5G45050.4	51.282	78	38	0	278	355	1021	1098	1.24e-19	92.8
MsaG043876	AT5G45050.1	51.282	78	38	0	278	355	1160	1237	1.45e-19	92.4
MsaG043876	AT5G45050.2	51.282	78	38	0	278	355	1132	1209	1.72e-19	92.0
MsaG043876	AT4G24240.1	43.966	116	62	2	242	355	224	338	5.60e-19	88.6
MsaG043876	AT1G29280.1	61.667	60	23	0	299	358	75	134	1.59e-18	85.5
MsaG043876	AT4G31550.2	46.809	94	47	1	273	363	217	310	2.00e-18	86.3
MsaG043876	AT4G31550.1	58.462	65	27	0	299	363	247	311	2.68e-18	85.9

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Find 124 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACCAAAATTTAAATC+AGG	0.434297	8:+52542026	MsaT043876.1:CDS
AAACTTGGGTTCTCCTAATG+CGG	0.633652	8:+52543342	MsaT043876.1:CDS
AAAGATCTAAAACTAGTTTG+TGG	0.559260	8:-52541987	None:intergenic
AAAGGTGATGGCAGTGGTGA+TGG	0.430730	8:-52541709	None:intergenic
AAATGATAATCAAGTATCAT+TGG	0.431401	8:+52542192	MsaT043876.1:CDS
AAGGTGATGGCAGTGGTGAT+GGG	0.441027	8:-52541708	None:intergenic
AAGTTTGTATCAGCTGTTGA+TGG	0.435333	8:+52543292	MsaT043876.1:CDS
AATCCAATTCTTCAATATTT+TGG	0.043748	8:-52543486	None:intergenic
AATGAGAAATCAGAAACGGC+GGG	0.597213	8:-52541834	None:intergenic
AATGGTGGTTGTGATTGAAG+GGG	0.628525	8:-52541409	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	52541219	52543510	52541219	ID=MsaG043876
Chr8	mRNA	52541219	52543510	52541219	ID=MsaT043876.1;Parent=MsaG043876
Chr8	exon	52541219	52542054	52541219	ID=MsaT043876.1.exon1;Parent=MsaT043876.1
Chr8	CDS	52541219	52542054	52541219	ID=cds.MsaT043876.1;Parent=MsaT043876.1
Chr8	exon	52542189	52542305	52542189	ID=MsaT043876.1.exon2;Parent=MsaT043876.1
Chr8	CDS	52542189	52542305	52542189	ID=cds.MsaT043876.1;Parent=MsaT043876.1
Chr8	exon	52543123	52543510	52543123	ID=MsaT043876.1.exon3;Parent=MsaT043876.1
Chr8	CDS	52543123	52543510	52543123	ID=cds.MsaT043876.1;Parent=MsaT043876.1

Gene Sequence

>MsaT043876.1

ATGAAAAATAACATCACATCCCCTCAAAACACAACACCGTATTGCTATGATGATTTTACATTTACCCAAGAAAATAGCACAATCCCAATTACCCCACTTAAACCCAATGACTTCATTGAACTAGACAAATTGGTAATTCGTTCCAATCCAACAAAAATTATCCCCACCCCTACTACCACCAATATCTTAACCCCTTCAATCACAACCACCATTATCCCCACCGCGTTGACCACCACAACCATTTTCCCCACCCCCTCGACCATTACTACACCTACTCATATCACCACCAATACCATCACTAACACTAGTTTTCATGGATCTGATCAAAATTCTACATTTTCTTATTTCCCAACACACGTTGAACAACAACATATGCAACCAAGTGAGTTCACTGAGCTAGAACAATGGATGCTCCAATTCAATCCCCCCACCACTATCCCCATCTCCACCATCACTATTCCCAACTCCACTACCCCTACTACCATTACCCCCATCACCACTGCCATCACCTTTAGTACACCCCCAACAACTATCAACACCCCCACCACCACTAGTCCTATAATCCCTACCACCACAACCATGATTAACTCTAGTGCTAATGGACTCAATCAATATCCCGCCGTTTCTGATTTCTCATTACCTGCCGAACAACAACAGGTTCAAGCCAACCAGAATAATACTACAATCCCCAAATTTCGACGTGAAATCGACCATGAATTAGTTCCACAACAACTCCAGAGAAGTCACAATCAACTACCAATTCAACTACCACAAACTAGTTTTAGATCTTTACCAAATACAAAATCAAAACGACCAAAATTTAAATCAGGAAAAAGAAAAAATGATAATCAAGTATCATTGGTGAGCTATGTGGGGGCAGATAAGGTTTCAGAGGATTCATGGAGATGGAGAAAATATGGACAAAAACCCATTAAAGGGTCCTCACATCCAAGAAGCTACTACAAATGTAGCAGTTCCAGTGATTGTTTAGCAAGAAAACAAGTGGAAAAAATAAAAGATGGAGATGACACTTATGAAGTGACATATCTAGGAGAACACAATCACAATAAACCAGCAAATAATCGGAACTCCATTGTCGATAGCTCTCGGTACATGTCACCAAAGTTTGTATCAGCTGTTGATGGAGAAGCTAGTTGTTTCACAAACATCATAAACTTGGGTTCTCCTAATGCGGTAATGTTGCAGCTTGATCAGCCAGAGAGCAGCAAGGCTCGGGTTCTTGTCGGTCAATCAAAAATCCCTGATCTAAAAACTGAACTTAGTCCTTTACCTACACTGGGCAAAGCAAAATCTCCCCAAAATATTGAAGAATTGGATTGA

Protein sequence

>MsaT043876.1

MKNNITSPQNTTPYCYDDFTFTQENSTIPITPLKPNDFIELDKLVIRSNPTKIIPTPTTTNILTPSITTTIIPTALTTTTIFPTPSTITTPTHITTNTITNTSFHGSDQNSTFSYFPTHVEQQHMQPSEFTELEQWMLQFNPPTTIPISTITIPNSTTPTTITPITTAITFSTPPTTINTPTTTSPIIPTTTTMINSSANGLNQYPAVSDFSLPAEQQQVQANQNNTTIPKFRREIDHELVPQQLQRSHNQLPIQLPQTSFRSLPNTKSKRPKFKSGKRKNDNQVSLVSYVGADKVSEDSWRWRKYGQKPIKGSSHPRSYYKCSSSSDCLARKQVEKIKDGDDTYEVTYLGEHNHNKPANNRNSIVDSSRYMSPKFVSAVDGEASCFTNIINLGSPNAVMLQLDQPESSKARVLVGQSKIPDLKTELSPLPTLGKAKSPQNIEELD*