Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043982 | XP_013446233.1 | 99.496 | 397 | 2 | 0 | 109 | 505 | 1 | 397 | 0.0 | 811 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043982 | sp|Q501B2|BZP16_ARATH | 64.962 | 391 | 119 | 8 | 109 | 491 | 1 | 381 | 1.21e-162 | 469 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043982 | tr|A0A072U370|A0A072U370_MEDTR | 99.496 | 397 | 2 | 0 | 109 | 505 | 1 | 397 | 0.0 | 811 |
Gene ID | Type | Classification |
---|---|---|
MsaG043982 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043982 | MtrunA17_Chr8g0369161 | 99.496 | 397 | 2 | 0 | 109 | 505 | 1 | 397 | 0.0 | 811 |
MsaG043982 | MtrunA17_Chr5g0410531 | 73.750 | 400 | 92 | 5 | 109 | 505 | 1 | 390 | 0.0 | 578 |
MsaG043982 | MtrunA17_Chr7g0275321 | 36.554 | 383 | 199 | 14 | 109 | 482 | 1 | 348 | 6.07e-53 | 184 |
MsaG043982 | MtrunA17_Chr8g0373571 | 41.509 | 371 | 152 | 18 | 125 | 482 | 9 | 327 | 1.84e-48 | 170 |
MsaG043982 | MtrunA17_Chr8g0347741 | 33.676 | 389 | 201 | 14 | 109 | 482 | 1 | 347 | 2.19e-39 | 147 |
MsaG043982 | MtrunA17_Chr1g0190521 | 73.563 | 87 | 11 | 1 | 5 | 79 | 14 | 100 | 1.01e-32 | 132 |
MsaG043982 | MtrunA17_Chr1g0155551 | 42.105 | 76 | 41 | 1 | 410 | 485 | 26 | 98 | 9.17e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG043982 | AT2G35530.1 | 64.962 | 391 | 119 | 8 | 109 | 491 | 1 | 381 | 1.23e-163 | 469 |
MsaG043982 | AT1G32150.1 | 58.603 | 401 | 132 | 8 | 109 | 498 | 1 | 378 | 1.61e-139 | 407 |
MsaG043982 | AT4G36730.1 | 38.378 | 370 | 131 | 15 | 127 | 485 | 9 | 292 | 9.18e-48 | 168 |
MsaG043982 | AT4G36730.2 | 37.669 | 369 | 133 | 14 | 127 | 485 | 9 | 290 | 4.94e-47 | 166 |
MsaG043982 | AT2G46270.1 | 34.366 | 355 | 160 | 13 | 144 | 482 | 29 | 326 | 1.41e-39 | 147 |
MsaG043982 | AT2G46270.3 | 34.366 | 355 | 160 | 13 | 144 | 482 | 29 | 326 | 1.41e-39 | 147 |
MsaG043982 | AT2G46270.2 | 60.563 | 71 | 28 | 0 | 412 | 482 | 233 | 303 | 4.47e-20 | 92.0 |
MsaG043982 | AT2G46270.2 | 31.841 | 201 | 95 | 9 | 144 | 328 | 29 | 203 | 2.96e-13 | 71.6 |
MsaG043982 | AT2G46270.4 | 60.563 | 71 | 28 | 0 | 412 | 482 | 233 | 303 | 4.47e-20 | 92.0 |
MsaG043982 | AT2G46270.4 | 31.841 | 201 | 95 | 9 | 144 | 328 | 29 | 203 | 2.96e-13 | 71.6 |
MsaG043982 | AT4G01120.1 | 46.392 | 97 | 49 | 2 | 386 | 482 | 223 | 316 | 1.25e-17 | 84.7 |
MsaG043982 | AT1G75390.1 | 38.384 | 99 | 57 | 2 | 387 | 485 | 15 | 109 | 7.93e-11 | 61.2 |
Find 182 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGAAAATGGGTTTCTATT+TGG | 0.158233 | 8:+54242848 | None:intergenic |
TAAATATAGGAATGGATTAT+TGG | 0.202244 | 8:+54250142 | MsaT043982.1:CDS |
TTTGGTCATAATCATGATTT+AGG | 0.216868 | 8:+54242897 | MsaT043982.1:CDS |
CAAAAGATCAAAAGGAAGTT+TGG | 0.253367 | 8:+54248095 | MsaT043982.1:CDS |
CCCCGAATGGGCTAACTATC+AGG | 0.257101 | 8:+54246117 | MsaT043982.1:CDS |
AAATATAGGAATGGATTATT+GGG | 0.271774 | 8:+54250143 | MsaT043982.1:CDS |
ACCTGGACACCCCACATATA+CGG | 0.275990 | 8:-54246279 | None:intergenic |
CAGGGCTCTCAATTGAAATT+CGG | 0.286966 | 8:+54249849 | MsaT043982.1:intron |
AAAGGCGGAAGCAGTCTAAT+AGG | 0.287126 | 8:+54250387 | MsaT043982.1:CDS |
TTTCTCCCAACTCCAGTTCA+TGG | 0.300705 | 8:-54242980 | None:intergenic |
ACCTGATAGTTAGCCCATTC+GGG | 0.308959 | 8:-54246118 | None:intergenic |
CACCCACATGCTGATCATTC+TGG | 0.309794 | 8:-54250965 | None:intergenic |
GGCATGGCATAAGGACTAAA+AGG | 0.316452 | 8:-54247853 | None:intergenic |
CCACATATACGGGTGGGCTT+GGG | 0.321320 | 8:-54246268 | None:intergenic |
GGTCCTCTCACAACAGTTCC+TGG | 0.329718 | 8:+54250105 | MsaT043982.1:CDS |
CCCACATATACGGGTGGGCT+TGG | 0.331512 | 8:-54246269 | None:intergenic |
AACCTGATAGTTAGCCCATT+CGG | 0.339192 | 8:-54246119 | None:intergenic |
GTACCTTCTACTGCCGTTGC+TGG | 0.355595 | 8:+54250207 | MsaT043982.1:CDS |
TACCAAGGAACGAGGATCTT+GGG | 0.357041 | 8:+54250937 | MsaT043982.1:CDS |
GTCGTACCTATGTCCGTTGC+TGG | 0.362082 | 8:+54250084 | MsaT043982.1:CDS |
ACAGATGACCCGGCTCAAAA+TGG | 0.372671 | 8:+54249997 | MsaT043982.1:intron |
TATACCTCCACCTGGATTCA+TGG | 0.375445 | 8:+54246236 | MsaT043982.1:CDS |
CGAGAACCATGGAATTGAAC+TGG | 0.378083 | 8:+54242926 | MsaT043982.1:CDS |
ACACCAGGGGCATCTGCTAA+TGG | 0.392485 | 8:+54248162 | MsaT043982.1:CDS |
ATCATCCCACGAGCATCAAT+TGG | 0.393842 | 8:+54242950 | MsaT043982.1:CDS |
GGCAGTTCAGTACCTCAAAA+TGG | 0.396437 | 8:+54250018 | MsaT043982.1:CDS |
AAAAGATCAAAAGGAAGTTT+GGG | 0.400644 | 8:+54248096 | MsaT043982.1:CDS |
CATAATCATGATTTAGGCTT+CGG | 0.402669 | 8:+54242903 | MsaT043982.1:CDS |
TAGGTACGACAGACATAGTT+TGG | 0.407072 | 8:-54250071 | None:intergenic |
GTAGCAGCTGGAGGCGTCTT+AGG | 0.407423 | 8:-54245962 | None:intergenic |
TTCTCCCAACTCCAGTTCAT+GGG | 0.413745 | 8:-54242979 | None:intergenic |
CCTCCAGCAACGGCAGTAGA+AGG | 0.414477 | 8:-54250210 | None:intergenic |
GGTACCTTTCCGTGCATTGC+AGG | 0.416480 | 8:-54250189 | None:intergenic |
CCATGAGCATGTACCGGACT+TGG | 0.418551 | 8:+54243004 | MsaT043982.1:CDS |
CCATCAGCTTCACTGCTGCC+TGG | 0.418689 | 8:-54248039 | None:intergenic |
CCCACTACTAACTTAAATAT+AGG | 0.436455 | 8:+54250129 | MsaT043982.1:CDS |
AGGGCTCTCAATTGAAATTC+GGG | 0.440159 | 8:+54249850 | MsaT043982.1:intron |
CATGAGGAGCAATCAGTGTT+TGG | 0.444270 | 8:+54242879 | MsaT043982.1:CDS |
CCCAAGCCCACCCGTATATG+TGG | 0.445469 | 8:+54246268 | MsaT043982.1:CDS |
AATCCAGGTGGAGGTATAGA+AGG | 0.445952 | 8:-54246231 | None:intergenic |
CTTTCCGTGCATTGCAGGAA+TGG | 0.449485 | 8:-54250184 | None:intergenic |
ATACCAAGGAACGAGGATCT+TGG | 0.451531 | 8:+54250936 | MsaT043982.1:CDS |
TCCCCAAGATCCTCGTTCCT+TGG | 0.452226 | 8:-54250939 | None:intergenic |
GAAGCATCCACCATACCATT+TGG | 0.458336 | 8:-54247880 | None:intergenic |
CACATATACGGGTGGGCTTG+GGG | 0.459364 | 8:-54246267 | None:intergenic |
AGGATGTGGTGGGGTGCCAT+AGG | 0.459399 | 8:-54247657 | None:intergenic |
ATGGTGTTCATTCACAACTT+TGG | 0.464556 | 8:+54250256 | MsaT043982.1:CDS |
CCCGTATATGTGGGGTGTCC+AGG | 0.466705 | 8:+54246278 | MsaT043982.1:CDS |
TGGGGATACATTGCGACATA+AGG | 0.466717 | 8:-54247677 | None:intergenic |
ATTGGGACAAACCCATGAAC+TGG | 0.467024 | 8:+54242968 | MsaT043982.1:CDS |
TTACCAATCAAAAGATCAAA+AGG | 0.467549 | 8:+54248087 | MsaT043982.1:CDS |
CTCTCCGTGCTGAACTGAGC+CGG | 0.468290 | 8:+54250584 | MsaT043982.1:CDS |
AAGGCGGAAGCAGTCTAATA+GGG | 0.468971 | 8:+54250388 | MsaT043982.1:CDS |
TCTCGTATTCACTCTTGATC+CGG | 0.469532 | 8:-54250603 | None:intergenic |
CCAAGTCCGGTACATGCTCA+TGG | 0.470376 | 8:-54243004 | None:intergenic |
TGTCACAGAACTTACATTCT+GGG | 0.470894 | 8:-54248532 | None:intergenic |
ATTGAAATTCGGGGAGAGGC+AGG | 0.472798 | 8:+54249860 | MsaT043982.1:CDS |
CCTATATTTAAGTTAGTAGT+GGG | 0.472827 | 8:-54250129 | None:intergenic |
TCATTCACAACTTTGGCTAC+AGG | 0.473534 | 8:+54250263 | MsaT043982.1:CDS |
GCTCATGATTTCGTACAGAT+AGG | 0.474666 | 8:-54245903 | None:intergenic |
CTATTTGGCACTTGGTCATG+AGG | 0.476261 | 8:+54242863 | MsaT043982.1:CDS |
TAGATCCAGGTTGCGAAAGC+AGG | 0.478690 | 8:+54250421 | MsaT043982.1:CDS |
GCCCATTCGGGGTTAACTGC+CGG | 0.479117 | 8:-54246106 | None:intergenic |
TATGCCATGCCTTCTCCAAA+TGG | 0.479292 | 8:+54247865 | MsaT043982.1:CDS |
GCTGGAGGAATGGTTAATGC+TGG | 0.479778 | 8:+54250225 | MsaT043982.1:CDS |
TATTACCTGCTTTCGCAACC+TGG | 0.480316 | 8:-54250426 | None:intergenic |
GAGCAGTCTTCAACGACAAC+CGG | 0.480478 | 8:+54246079 | MsaT043982.1:CDS |
TGGTTAACTATTAGGATGAA+AGG | 0.486053 | 8:+54250351 | MsaT043982.1:intron |
ATGGGTTTCTATTTGGCACT+TGG | 0.486304 | 8:+54242855 | MsaT043982.1:CDS |
CTAATGGAATTCATTCCAAA+AGG | 0.489473 | 8:+54248178 | MsaT043982.1:CDS |
TGATAAAACGTTAAAAGAAA+AGG | 0.490283 | 8:+54245937 | MsaT043982.1:CDS |
TTTGGAGAAGGCATGGCATA+AGG | 0.491615 | 8:-54247862 | None:intergenic |
TACTGCCGTTGCTGGAGGAA+TGG | 0.499769 | 8:+54250215 | MsaT043982.1:CDS |
GGGAATCTGCACGTAGATCC+AGG | 0.502140 | 8:+54250408 | MsaT043982.1:CDS |
TCAATATCATGTCCCAAGTC+CGG | 0.504157 | 8:-54243017 | None:intergenic |
GCCTCCAGCTGCTACGTCAC+AGG | 0.506976 | 8:+54245970 | MsaT043982.1:CDS |
GGTTAACTATTAGGATGAAA+GGG | 0.512619 | 8:+54250352 | MsaT043982.1:intron |
ACAAACCCATGAACTGGAGT+TGG | 0.513378 | 8:+54242974 | MsaT043982.1:CDS |
GTTTGGTTAACAACTGTATG+AGG | 0.514834 | 8:-54250054 | None:intergenic |
TGGTTCTACAGGAGAGACTC+GGG | 0.517448 | 8:+54250910 | MsaT043982.1:intron |
CAAACCCATGAACTGGAGTT+GGG | 0.518339 | 8:+54242975 | MsaT043982.1:CDS |
TGCTCATCCATCCATGCCTC+CGG | 0.518685 | 8:+54247712 | MsaT043982.1:CDS |
ATGATCCCAGTTCAATTCCA+TGG | 0.518870 | 8:-54242932 | None:intergenic |
GGATGTGGTGGGGTGCCATA+GGG | 0.518948 | 8:-54247656 | None:intergenic |
GGGGTTAACTGCCGGAGTAC+CGG | 0.520435 | 8:-54246098 | None:intergenic |
CTCAATTGAAATTCGGGGAG+AGG | 0.522210 | 8:+54249856 | MsaT043982.1:CDS |
CCAAGCCCACCCGTATATGT+GGG | 0.524442 | 8:+54246269 | MsaT043982.1:CDS |
CTCCGGCAGTTAACCCCGAA+TGG | 0.525253 | 8:+54246104 | MsaT043982.1:CDS |
CAGCATATGATGCCTCCCTA+TGG | 0.528530 | 8:+54247641 | MsaT043982.1:intron |
AAGTATACCGGAGGCATGGA+TGG | 0.528640 | 8:-54247719 | None:intergenic |
AGGACCTGTGACGTAGCAGC+TGG | 0.529029 | 8:-54245974 | None:intergenic |
TCCTATATTTAAGTTAGTAG+TGG | 0.530842 | 8:-54250130 | None:intergenic |
CCTGGACACCCCACATATAC+GGG | 0.532472 | 8:-54246278 | None:intergenic |
AGATTTCAAAATCACCTTGA+GGG | 0.533419 | 8:-54250647 | None:intergenic |
TCATCCCACGAGCATCAATT+GGG | 0.536158 | 8:+54242951 | MsaT043982.1:CDS |
CATGGTCAAGAAGGTGATGA+TGG | 0.540093 | 8:+54243065 | MsaT043982.1:CDS |
TTCAACGACAACCGGTACTC+CGG | 0.540490 | 8:+54246087 | MsaT043982.1:CDS |
GGACTTGATGCCATGAATCC+AGG | 0.540907 | 8:-54246246 | None:intergenic |
GACATGCAGGGGAATACTCC+AGG | 0.547866 | 8:+54248021 | MsaT043982.1:intron |
GAACAAAACCATGGTCAAGA+AGG | 0.548889 | 8:+54243056 | MsaT043982.1:CDS |
TGTGGTGGGGTGCCATAGGG+AGG | 0.551298 | 8:-54247653 | None:intergenic |
AGAGGACCAGCAACGGACAT+AGG | 0.552788 | 8:-54250090 | None:intergenic |
GCAAGTGAAGGCACTAGTGA+AGG | 0.553916 | 8:+54248495 | MsaT043982.1:CDS |
CAAGTCCGGTACATGCTCAT+GGG | 0.554429 | 8:-54243003 | None:intergenic |
TACCGTTGGGGAATCGTCAA+AGG | 0.559545 | 8:-54244897 | None:intergenic |
TCCGGCAGTTAACCCCGAAT+GGG | 0.560162 | 8:+54246105 | MsaT043982.1:CDS |
CCTTCTACTGCCGTTGCTGG+AGG | 0.561073 | 8:+54250210 | MsaT043982.1:CDS |
TTGCTGTATTACAGATGACC+CGG | 0.563684 | 8:+54249987 | MsaT043982.1:intron |
CATCATCACCTTCTTGACCA+TGG | 0.568189 | 8:-54243064 | None:intergenic |
AATGATCAGCATGTGGGTGA+AGG | 0.569522 | 8:+54250969 | MsaT043982.1:CDS |
ACCAAGGAACGAGGATCTTG+GGG | 0.570685 | 8:+54250938 | MsaT043982.1:CDS |
CATGAGCATGTACCGGACTT+GGG | 0.572358 | 8:+54243005 | MsaT043982.1:CDS |
TACTAACTTAAATATAGGAA+TGG | 0.572861 | 8:+54250134 | MsaT043982.1:CDS |
TCCACCATTCCTGCAATGCA+CGG | 0.574091 | 8:+54250180 | MsaT043982.1:CDS |
TGGTAAACCTCATGAGGTGA+AGG | 0.575725 | 8:+54248059 | MsaT043982.1:CDS |
GGACACCCCACATATACGGG+TGG | 0.576225 | 8:-54246275 | None:intergenic |
TTCTGAGAATGCTTCCCTCA+AGG | 0.576301 | 8:+54250633 | MsaT043982.1:CDS |
TCCGTGCATTGCAGGAATGG+TGG | 0.577552 | 8:-54250181 | None:intergenic |
ACATGATATTGACAATAACA+TGG | 0.578390 | 8:+54243028 | MsaT043982.1:CDS |
AGGAACGAGGATCTTGGGGA+GGG | 0.579743 | 8:+54250942 | MsaT043982.1:CDS |
TTTGTCCCAATTGATGCTCG+TGG | 0.581585 | 8:-54242956 | None:intergenic |
AATATAGGAATGGATTATTG+GGG | 0.584542 | 8:+54250144 | MsaT043982.1:CDS |
CACCTTTGACGATTCCCCAA+CGG | 0.584619 | 8:+54244895 | MsaT043982.1:CDS |
TTGGTTCTACAGGAGAGACT+CGG | 0.589648 | 8:+54250909 | MsaT043982.1:intron |
AATGAGCTTGGTAAAACACC+AGG | 0.590812 | 8:+54248147 | MsaT043982.1:CDS |
CATGCCTTCTCCAAATGGTA+TGG | 0.591308 | 8:+54247870 | MsaT043982.1:CDS |
GCTCAGTTCAGCACGGAGAG+AGG | 0.592194 | 8:-54250581 | None:intergenic |
ACGAAAGTATACCGGAGGCA+TGG | 0.593534 | 8:-54247723 | None:intergenic |
ATTGCGACATAAGGATGTGG+TGG | 0.595851 | 8:-54247668 | None:intergenic |
TTAGGCTTCGGCGAGAACCA+TGG | 0.598360 | 8:+54242915 | MsaT043982.1:CDS |
GCAGGAATGGTGGATGAAGT+TGG | 0.599117 | 8:-54250171 | None:intergenic |
TTGTCCCAATTGATGCTCGT+GGG | 0.599222 | 8:-54242955 | None:intergenic |
CTGGAGGAATGGTTAATGCT+GGG | 0.601036 | 8:+54250226 | MsaT043982.1:CDS |
TACATTGCGACATAAGGATG+TGG | 0.605542 | 8:-54247671 | None:intergenic |
AAGTTTGGGTAGTTCAAACA+TGG | 0.608623 | 8:+54248110 | MsaT043982.1:CDS |
TTTAAGTTAGTAGTGGGACC+AGG | 0.608854 | 8:-54250123 | None:intergenic |
GATGAGCATATATGCCACCA+TGG | 0.610974 | 8:-54247697 | None:intergenic |
GGGCCAGAATGATCAGCATG+TGG | 0.612197 | 8:+54250962 | MsaT043982.1:CDS |
AGAAACCCATGAGCATGTAC+CGG | 0.612951 | 8:+54242998 | MsaT043982.1:CDS |
CATACCATTTGGAGAAGGCA+TGG | 0.613312 | 8:-54247869 | None:intergenic |
ATTCCATTAGCAGATGCCCC+TGG | 0.621104 | 8:-54248165 | None:intergenic |
ACCTGTGACGTAGCAGCTGG+AGG | 0.621523 | 8:-54245971 | None:intergenic |
CATTCCTGCAATGCACGGAA+AGG | 0.621782 | 8:+54250185 | MsaT043982.1:CDS |
CATGATATTGACAATAACAT+GGG | 0.622279 | 8:+54243029 | MsaT043982.1:CDS |
GACACCCCACATATACGGGT+GGG | 0.625983 | 8:-54246274 | None:intergenic |
GAGAACCATGGAATTGAACT+GGG | 0.626921 | 8:+54242927 | MsaT043982.1:CDS |
TGTTGTGAGAGGACCAGCAA+CGG | 0.626942 | 8:-54250097 | None:intergenic |
ATGAGCATATATGCCACCAT+GGG | 0.627162 | 8:-54247696 | None:intergenic |
GCCTTCTCCAAATGGTATGG+TGG | 0.630900 | 8:+54247873 | MsaT043982.1:CDS |
CCAGGCAGCAGTGAAGCTGA+TGG | 0.631933 | 8:+54248039 | MsaT043982.1:CDS |
ATTAACCATTCCTCCAGCAA+CGG | 0.632383 | 8:-54250220 | None:intergenic |
GTTAATGCTGGGCCACGAGA+TGG | 0.632506 | 8:+54250237 | MsaT043982.1:CDS |
GAATCGTCAAAGGTGAAGCA+TGG | 0.632687 | 8:-54244887 | None:intergenic |
CAAGCCCACCCGTATATGTG+GGG | 0.632827 | 8:+54246270 | MsaT043982.1:CDS |
TGAACTAGCTCAGCGTGCTG+AGG | 0.634295 | 8:+54250540 | MsaT043982.1:CDS |
GATGCCATGAATCCAGGTGG+AGG | 0.637571 | 8:-54246240 | None:intergenic |
AGAGACTCGGGGAGATACCA+AGG | 0.637623 | 8:+54250922 | MsaT043982.1:CDS |
TATCCTTCTATACCTCCACC+TGG | 0.638956 | 8:+54246228 | MsaT043982.1:CDS |
TTGCGACATAAGGATGTGGT+GGG | 0.644911 | 8:-54247667 | None:intergenic |
TCCACCATACCATTTGGAGA+AGG | 0.648739 | 8:-54247874 | None:intergenic |
GGCCAGAATGATCAGCATGT+GGG | 0.651767 | 8:+54250963 | MsaT043982.1:CDS |
TATGTCGCAATGTATCCCCA+TGG | 0.658011 | 8:+54247680 | MsaT043982.1:CDS |
AAAGGGAGCTTAAACGACAA+AGG | 0.658178 | 8:+54250369 | MsaT043982.1:CDS |
GGACCAGGAACTGTTGTGAG+AGG | 0.660532 | 8:-54250108 | None:intergenic |
ATGAGATGAAATTACCGTTG+GGG | 0.660551 | 8:-54244909 | None:intergenic |
CCTGATAGTTAGCCCATTCG+GGG | 0.666618 | 8:-54246117 | None:intergenic |
AAGGAACGAGGATCTTGGGG+AGG | 0.668920 | 8:+54250941 | MsaT043982.1:CDS |
CGGGGAGATACCAAGGAACG+AGG | 0.670652 | 8:+54250929 | MsaT043982.1:CDS |
ATGAGCTTGGTAAAACACCA+GGG | 0.672813 | 8:+54248148 | MsaT043982.1:CDS |
GGGCTCTCAATTGAAATTCG+GGG | 0.673030 | 8:+54249851 | MsaT043982.1:intron |
AGCTGATGGTAAACCTCATG+AGG | 0.683457 | 8:+54248053 | MsaT043982.1:CDS |
TGTGAATGAACACCATCTCG+TGG | 0.684340 | 8:-54250249 | None:intergenic |
GTCGCAATGTATCCCCATGG+TGG | 0.685770 | 8:+54247683 | MsaT043982.1:CDS |
TGATCCGGCTCAGTTCAGCA+CGG | 0.693436 | 8:-54250588 | None:intergenic |
CTTGATGCCATGAATCCAGG+TGG | 0.705384 | 8:-54246243 | None:intergenic |
GGGAGCTTAAACGACAAAGG+CGG | 0.710557 | 8:+54250372 | MsaT043982.1:CDS |
AGTGGTGAGAGTGCAAGTGA+AGG | 0.711216 | 8:+54248483 | MsaT043982.1:intron |
ATGGGATTAGAACAAAACCA+TGG | 0.719044 | 8:+54243047 | MsaT043982.1:CDS |
GGTTCTACAGGAGAGACTCG+GGG | 0.726395 | 8:+54250911 | MsaT043982.1:intron |
TGAGCTTGGTAAAACACCAG+GGG | 0.727883 | 8:+54248149 | MsaT043982.1:CDS |
TGAGCATATATGCCACCATG+GGG | 0.728314 | 8:-54247695 | None:intergenic |
TGCGACATAAGGATGTGGTG+GGG | 0.734427 | 8:-54247666 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 54242855 | 54251001 | 54242855 | ID=MsaG043982 |
Chr8 | mRNA | 54242855 | 54251001 | 54242855 | ID=MsaT043982.1;Parent=MsaG043982 |
Chr8 | exon | 54242855 | 54243086 | 54242855 | ID=MsaT043982.1.exon1;Parent=MsaT043982.1 |
Chr8 | CDS | 54242855 | 54243086 | 54242855 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54244873 | 54244916 | 54244873 | ID=MsaT043982.1.exon2;Parent=MsaT043982.1 |
Chr8 | CDS | 54244873 | 54244916 | 54244873 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54245872 | 54245991 | 54245872 | ID=MsaT043982.1.exon3;Parent=MsaT043982.1 |
Chr8 | CDS | 54245872 | 54245991 | 54245872 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54246079 | 54246138 | 54246079 | ID=MsaT043982.1.exon4;Parent=MsaT043982.1 |
Chr8 | CDS | 54246079 | 54246138 | 54246079 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54246225 | 54246299 | 54246225 | ID=MsaT043982.1.exon5;Parent=MsaT043982.1 |
Chr8 | CDS | 54246225 | 54246299 | 54246225 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54247644 | 54247733 | 54247644 | ID=MsaT043982.1.exon6;Parent=MsaT043982.1 |
Chr8 | CDS | 54247644 | 54247733 | 54247644 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54247844 | 54247903 | 54247844 | ID=MsaT043982.1.exon7;Parent=MsaT043982.1 |
Chr8 | CDS | 54247844 | 54247903 | 54247844 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54248030 | 54248199 | 54248030 | ID=MsaT043982.1.exon8;Parent=MsaT043982.1 |
Chr8 | CDS | 54248030 | 54248199 | 54248030 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54248485 | 54248539 | 54248485 | ID=MsaT043982.1.exon9;Parent=MsaT043982.1 |
Chr8 | CDS | 54248485 | 54248539 | 54248485 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54249852 | 54249894 | 54249852 | ID=MsaT043982.1.exon10;Parent=MsaT043982.1 |
Chr8 | CDS | 54249852 | 54249894 | 54249852 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54250001 | 54250284 | 54250001 | ID=MsaT043982.1.exon11;Parent=MsaT043982.1 |
Chr8 | CDS | 54250001 | 54250284 | 54250001 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54250365 | 54250442 | 54250365 | ID=MsaT043982.1.exon12;Parent=MsaT043982.1 |
Chr8 | CDS | 54250365 | 54250442 | 54250365 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54250529 | 54250654 | 54250529 | ID=MsaT043982.1.exon13;Parent=MsaT043982.1 |
Chr8 | CDS | 54250529 | 54250654 | 54250529 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Chr8 | exon | 54250921 | 54251001 | 54250921 | ID=MsaT043982.1.exon14;Parent=MsaT043982.1 |
Chr8 | CDS | 54250921 | 54251001 | 54250921 | ID=cds.MsaT043982.1;Parent=MsaT043982.1 |
Gene Sequence |
Protein sequence |