AlfalfaGEDB | MsaG044112

M. sativa ssp. caerulea / MsaG044112

KEGG: K00924 K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044112	XP_013446329.3	90.365	384	34	2	7	390	27	407	0.0	705

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044112	sp\|Q9SII6\|PIX13_ARATH	63.235	340	121	2	48	387	62	397	5.22e-151	449

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044112	tr\|A0A396GMV8\|A0A396GMV8_MEDTR	90.365	384	34	2	7	390	27	407	0.0	705

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000138	MsaG044112	0.830358	5.524546e-55	1.615312e-52
MsaG001331	MsaG044112	0.807190	9.685814e-50	1.545977e-47
MsaG003310	MsaG044112	0.805111	2.641900e-49	4.015567e-47
MsaG004329	MsaG044112	0.821073	8.608489e-53	1.947837e-50
MsaG005118	MsaG044112	0.802429	9.461582e-49	1.351704e-46
MsaG005479	MsaG044112	0.824560	1.338375e-53	3.326483e-51
MsaG005530	MsaG044112	0.806876	1.127945e-49	1.787020e-47
MsaG005649	MsaG044112	0.807455	8.517047e-50	1.368010e-47
MsaG005922	MsaG044112	0.804579	3.407280e-49	5.115391e-47
MsaG007576	MsaG044112	0.824772	1.193785e-53	2.984252e-51

Showing 1 to 10 of 64 entries

Previous1 2 3 4 5 6 7Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044112	MtrunA17_Chr8g0370461	90.365	384	34	2	7	390	27	407	0.0	705
MsaG044112	MtrunA17_Chr8g0370571	81.867	375	41	5	12	385	18	366	0.0	608
MsaG044112	MtrunA17_Chr5g0406841	73.313	326	83	2	49	372	122	445	5.72e-168	491
MsaG044112	MtrunA17_Chr3g0143951	59.538	346	133	3	33	376	42	382	6.11e-140	418
MsaG044112	MtrunA17_Chr5g0448661	60.125	321	121	2	47	367	79	392	9.48e-133	399
MsaG044112	MtrunA17_Chr2g0328171	52.514	358	157	3	15	369	21	368	4.56e-132	397
MsaG044112	MtrunA17_Chr5g0435211	51.902	368	162	3	46	409	48	404	1.19e-131	397
MsaG044112	MtrunA17_Chr5g0416311	53.083	373	165	3	4	376	13	375	1.52e-128	389
MsaG044112	MtrunA17_Chr7g0238671	56.173	324	140	1	50	373	50	371	7.45e-127	384
MsaG044112	MtrunA17_Chr3g0111631	52.941	340	153	2	50	389	53	385	2.92e-126	382

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044112	AT2G17220.1	63.235	340	121	2	48	387	62	397	5.31e-152	449
MsaG044112	AT2G17220.2	63.235	340	121	2	48	387	61	396	6.50e-152	449
MsaG044112	AT4G35600.1	58.127	363	135	3	9	371	34	379	7.78e-149	441
MsaG044112	AT4G35600.2	58.127	363	135	3	9	371	35	380	1.09e-148	441
MsaG044112	AT1G76360.1	59.119	318	125	3	47	364	138	450	3.70e-134	406
MsaG044112	AT5G02290.2	54.519	343	151	2	33	372	25	365	1.30e-131	396
MsaG044112	AT5G02290.1	54.519	343	151	2	33	372	25	365	1.30e-131	396
MsaG044112	AT2G28930.2	51.882	372	166	2	44	415	40	398	6.97e-131	395
MsaG044112	AT2G28930.3	51.882	372	166	2	44	415	43	401	7.95e-131	395
MsaG044112	AT2G28930.1	51.882	372	166	2	44	415	51	409	1.48e-130	395

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 181 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTAGGCATGGGGCTG+GGG	0.433832	8:-56154074	MsaT044112.1:CDS
AAAAGTTTATAAAGGTTGGT+TGG	0.474192	8:-56185912	MsaT044112.1:CDS
AACAGGATGCTCGTGTGCAG+AGG	0.591159	8:-56153813	MsaT044112.1:CDS
AAGAGTGATGTGTATGGCTT+TGG	0.465372	8:-56168419	MsaT044112.1:CDS
AAGGCGGATCAGTGGCGGCC+GGG	0.499627	8:-56153772	MsaT044112.1:CDS
AAGGCTTTCTCACCCAAACT+TGG	0.475475	8:-56181809	MsaT044112.1:CDS
AAGGGATCGAACAGAGTTTG+GGG	0.635975	8:-56153683	MsaT044112.1:CDS
AAGTGGCTGAGGGAGGAAGA+TGG	0.604716	8:-56153733	MsaT044112.1:CDS
AATAACGAAATATCTTTCAA+TGG	0.504752	8:+56154150	None:intergenic
AATGAGAGAAGACTAGTGAC+CGG	0.614447	8:-56153607	MsaT044112.1:CDS

Showing 1 to 10 of 181 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	56153570	56187360	56153570	ID=MsaG044112
Chr8	mRNA	56153570	56187360	56153570	ID=MsaT044112.1;Parent=MsaG044112
Chr8	exon	56153570	56154366	56153570	ID=MsaT044112.1.exon10;Parent=MsaT044112.1
Chr8	CDS	56153570	56154366	56153570	ID=cds.MsaT044112.1;Parent=MsaT044112.1
Chr8	exon	56158459	56158522	56158459	ID=MsaT044112.1.exon9;Parent=MsaT044112.1
Chr8	CDS	56158459	56158522	56158459	ID=cds.MsaT044112.1;Parent=MsaT044112.1
Chr8	exon	56160730	56160947	56160730	ID=MsaT044112.1.exon8;Parent=MsaT044112.1
Chr8	CDS	56160730	56160947	56160730	ID=cds.MsaT044112.1;Parent=MsaT044112.1
Chr8	exon	56166303	56166345	56166303	ID=MsaT044112.1.exon7;Parent=MsaT044112.1
Chr8	CDS	56166303	56166345	56166303	ID=cds.MsaT044112.1;Parent=MsaT044112.1
Chr8	exon	56168070	56168455	56168070	ID=MsaT044112.1.exon6;Parent=MsaT044112.1
Chr8	CDS	56168070	56168455	56168070	ID=cds.MsaT044112.1;Parent=MsaT044112.1
Chr8	exon	56180840	56180963	56180840	ID=MsaT044112.1.exon5;Parent=MsaT044112.1
Chr8	CDS	56180840	56180963	56180840	ID=cds.MsaT044112.1;Parent=MsaT044112.1
Chr8	exon	56181476	56181618	56181476	ID=MsaT044112.1.exon4;Parent=MsaT044112.1
Chr8	CDS	56181476	56181618	56181476	ID=cds.MsaT044112.1;Parent=MsaT044112.1
Chr8	exon	56181716	56181851	56181716	ID=MsaT044112.1.exon3;Parent=MsaT044112.1
Chr8	CDS	56181716	56181851	56181716	ID=cds.MsaT044112.1;Parent=MsaT044112.1
Chr8	exon	56185808	56186169	56185808	ID=MsaT044112.1.exon2;Parent=MsaT044112.1
Chr8	CDS	56185808	56186169	56185808	ID=cds.MsaT044112.1;Parent=MsaT044112.1
Chr8	exon	56187342	56187360	56187342	ID=MsaT044112.1.exon1;Parent=MsaT044112.1
Chr8	CDS	56187342	56187360	56187342	ID=cds.MsaT044112.1;Parent=MsaT044112.1

Gene Sequence

>MsaT044112.1

ATGGGTCTTGGTGGTGATGGTTCAACAAGCACTGTTGGAATCTCAGCAACTACAAGCAGTGCTGGAAGAAGCCAATTCTCTGAAGTAGCAAGTGGAAGCATTGATGATACTACTGAAGGAGGGACTCTTACTTTTCCTTCACCAAATGGTCAAATTCTTGAAAGACCAAATTTGAAGGTTTTTGCTTTTATTGAATTGAAAGCTGCTACAAAAAGCTTCAAATCTGATACATTACTTGGTGAAGGTGGTTTTGTAAAAGTTTATAAAGGTTGGTTGGATGAGAAAACACTTTGTCCTTGTAAAGCAGGTTTTGGAATGGCTGTTGCTATCAGAAAATTGAAATCTGAAACTGAAAGGACTCTAGGATTTCAAGAATGGCAGTCAGAAATTAACCTCTTAGGAAGGCTTTCTCACCCAAACTTGGTGAAGCTGTTAGGTTACTGTTGGGACGACGACGAGTTTCTTCTTGTGTATGAGTTCATACCAAAAGGAAGTCTGGAGAATCATCTCTTCAGAAGAAATTATAACCTTGAACCACTTTCTTGGAACACAAGAATCAAAATAGCTATTGGTGCAGCTCGTGGTTTGGCTTTCTTGCATGATTCAGCACAGCAAGTCATATACAGAGATTTTAAGGCTAAAAATATACTCCTTGATGGGAGTTACAATGCAAAAATCGCAGATTTCGGATTAGCTAGAATGGGGCCTTCTGGGGGACAATCACATGTAACTACCAGGGTCATGGGAACTTATGGTTTAGCTGCTCCAGAATACATTGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGCTTTGGTGTGGTGCTGTTAGAAATTCTGACAGCCATGAGGGCATTGGACATAAAGAGGCCAACAGGACAACATAATCTAGTTGAATGGGTGAAGCCTTCTCTGTCAAATAATAGTAAGTTGAAAGGCATAATGGATGCTAGAATAGAAGGACAATACTCACCAAAGGCAGCAGTACAAGCAGCAGCACTTTCTCTAAAGTGCTTAGAAAATGACCCTAAACAACGTCCTTCTATGAAAGAAGTACTTGAATCATTGGAAGCTATTGAAGCAATTCAGGTCAAAACCAAAAGATCCAACAACAATTCTCATCAACCTCCAGTTCTTCAAGCTGCTAGGCACCAGAGAGTTGTGAAAAATGAAGAAGGAGAAAGGAAAATCAATCAGCGTGTCAAGCCCCGATTTCATCGTTCTGCTTGGGTTTACGCAATATTTGTCTTTTCTGCTTGTGAGATTTTAGATATCTTCTTCGTGTGTGAAACTGTGCGTTACAAGTTTCATAACCACGACGTGATGACGGATGTGAGTTTGGAAGATTTCCACTTAAGCGATGATGAAGGGTTGAGTTTCGATTCGGAGGAGAATGACGACTCGTCGCATGACCCAAAGTTGTGCCTGGTGGATTTTGTTGCTCTACTTCTGTTACCTGTAGCACAGTGTTTGATTTGGAAGAAGAAGAAAATTCGTTTCAGAGACATGAAGATTCGTATGTCAGAGGTTTGGAGGTCGGTGAAGGGGGTTACAGTTAAAGAAGCTCATCGAGGTTTATTTTTGTTTCAATTCTTTCATCGGTTGGATATGGATCCGGTGCTGAAAGGTGGTCCTTGGACCTATGATAATCAAATGTTAGTACTTGAACAAATCAGGGTTGGAATTCCATTGAAAGATATTTCGTTATTTCACTTGACGTTATGTGTTCAGGTTCATAACTTACCAATTGGCATGATGAAGAAAAAGGTAGGCATGGGGCTGGGGAATTACATTGGGGAGTTCCTTGAGTATGATGTTACTAACAAAACCAGCTTCTGGCGCGCATATATGCGCTTGAAGGGGAGGATTGATGTCAGGAAACCTTTGAAGATAGAGAAAAAGATTAAGGCAAACGGAGGAGATTGGTGTACTGTGAATTTTAAGTATGAAAAACTGGGAATATTTTGTTTTGTTTGTGGAGGGGTAGGACACGCTAAGAATAAGTGCGAGGTTCGTTTTTCACAACAGGATGCTCGTGTGCAGAGGAGGTGGTCTAATAAATTGAAGGCGGATCAGTGGCGGCCGGGAGGGAAGGTTGAGTCAAAGTGGCTGAGGGAGGAAGATGGTAGTAGGGCTGACGTGACCAGAGAGAGAAGGGATCGAACAGAGTTTGGGGAGGCGGGTGAACCGGGAGTGCAACAAACATCTCAGACTCCCCGTGAAAGTGACAATGAGAGAAGACTAGTGACCGGAAACATTCTTGGTGGAGCCATGCACAACAATTCATAA

Protein sequence

>MsaT044112.1

MGLGGDGSTSTVGISATTSSAGRSQFSEVASGSIDDTTEGGTLTFPSPNGQILERPNLKVFAFIELKAATKSFKSDTLLGEGGFVKVYKGWLDEKTLCPCKAGFGMAVAIRKLKSETERTLGFQEWQSEINLLGRLSHPNLVKLLGYCWDDDEFLLVYEFIPKGSLENHLFRRNYNLEPLSWNTRIKIAIGAARGLAFLHDSAQQVIYRDFKAKNILLDGSYNAKIADFGLARMGPSGGQSHVTTRVMGTYGLAAPEYIATGHLYVKSDVYGFGVVLLEILTAMRALDIKRPTGQHNLVEWVKPSLSNNSKLKGIMDARIEGQYSPKAAVQAAALSLKCLENDPKQRPSMKEVLESLEAIEAIQVKTKRSNNNSHQPPVLQAARHQRVVKNEEGERKINQRVKPRFHRSAWVYAIFVFSACEILDIFFVCETVRYKFHNHDVMTDVSLEDFHLSDDEGLSFDSEENDDSSHDPKLCLVDFVALLLLPVAQCLIWKKKKIRFRDMKIRMSEVWRSVKGVTVKEAHRGLFLFQFFHRLDMDPVLKGGPWTYDNQMLVLEQIRVGIPLKDISLFHLTLCVQVHNLPIGMMKKKVGMGLGNYIGEFLEYDVTNKTSFWRAYMRLKGRIDVRKPLKIEKKIKANGGDWCTVNFKYEKLGIFCFVCGGVGHAKNKCEVRFSQQDARVQRRWSNKLKADQWRPGGKVESKWLREEDGSRADVTRERRDRTEFGEAGEPGVQQTSQTPRESDNERRLVTGNILGGAMHNNS*