AlfalfaGEDB | MsaG044253

M. sativa ssp. caerulea / MsaG044253

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044253	AES89813.2	82.418	91	16	0	2	92	5	95	3.16e-46	159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044253	tr\|G7JCP4\|G7JCP4_MEDTR	82.418	91	16	0	2	92	5	95	1.51e-46	159

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TFs/TRs:

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Gene ID	Type	Classification
MsaG044253	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 37 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATTGGATGGATTTGA+AGG	0.422078	8:-57808023	MsaT044253.1:CDS
AAATTGCTTCTTGTGTTAAA+TGG	0.133780	8:-57808062	MsaT044253.1:CDS
AACAATTGGATGGATTTGAA+GGG	0.574388	8:-57808022	MsaT044253.1:CDS
AAGAATCAAATCATCTGTCC+TGG	0.550254	8:+57807986	None:intergenic
AAGGGAGTTCTAAGAGAACC+AGG	0.594888	8:-57808004	MsaT044253.1:CDS
AATCAAAGGTGGAAAAGAGA+AGG	0.592127	8:-57807892	MsaT044253.1:CDS
AATTGCTTCTTGTGTTAAAT+GGG	0.315429	8:-57808061	MsaT044253.1:CDS
ACAAACTCATTTCTGATGTG+TGG	0.578358	8:-57808131	MsaT044253.1:CDS
AGGACAGATGATTTGATTCT+TGG	0.289591	8:-57807984	MsaT044253.1:CDS
AGTGGTAAAAGAATCAAAGG+TGG	0.614504	8:-57807903	MsaT044253.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	57807629	57812357	57807629	ID=MsaG044253
Chr8	mRNA	57807629	57812357	57807629	ID=MsaT044253.1;Parent=MsaG044253
Chr8	exon	57807629	57807681	57807629	ID=MsaT044253.1.exon4;Parent=MsaT044253.1
Chr8	CDS	57807629	57807681	57807629	ID=cds.MsaT044253.1;Parent=MsaT044253.1
Chr8	exon	57807847	57808177	57807847	ID=MsaT044253.1.exon3;Parent=MsaT044253.1
Chr8	CDS	57807847	57808177	57807847	ID=cds.MsaT044253.1;Parent=MsaT044253.1
Chr8	exon	57809697	57809942	57809697	ID=MsaT044253.1.exon2;Parent=MsaT044253.1
Chr8	CDS	57809697	57809942	57809697	ID=cds.MsaT044253.1;Parent=MsaT044253.1
Chr8	exon	57812328	57812357	57812328	ID=MsaT044253.1.exon1;Parent=MsaT044253.1
Chr8	CDS	57812328	57812357	57812328	ID=cds.MsaT044253.1;Parent=MsaT044253.1

Gene Sequence

>MsaT044253.1

ATGAGTAGTGCCTATGTGAAACTTTCAAATGAATATGAATGTGTGCCAAATTGTGATGATGAATTAAAGCCTACAATTGGACAAGTATTTGATACGTTAGCAGAAGGTAAAAATTTTTACGAAAAATATGCACTCTCTGTCGGATTTAGCGTGCGTTCATCATCATCGACTATAGATAAAAACGGCGTGAAGCGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGAAGGATGGTAAGGAGCAAAGTGAATCTACTGTCAAGCTGACAATGTCTTGGAAGAAGACAACAAACTCATTTCTGATGTGTGGAACCACTTACATAGCTGTGTGGAGAAAATTTGGAAAAGATAAGGAAAAATTGCTTCTTGTGTTAAATGGGGTTGTTAACATGGAAAAACAATTGGATGGATTTGAAGGGAGTTCTAAGAGAACCAGGACAGATGATTTGATTCTTGGGTCCAATATTCCTGACGAAGTAGAAATCCTTCCACCAAAATTTGCAAAGACTAAAGGTAGTGGTAAAAGAATCAAAGGTGGAAAAGAGAAGGCTATTGAACAACAACAAAAAAAAGCAATACTTTGTAAGTCATGCGGATTGGAAGAATGGCATAGAAGAAGGATGAAGGAAGTTAGACAAACAAGATGA

Protein sequence

>MsaT044253.1

MSSAYVKLSNEYECVPNCDDELKPTIGQVFDTLAEGKNFYEKYALSVGFSVRSSSSTIDKNGVKRWKYFVCSKEGYLPNKKDGKEQSESTVKLTMSWKKTTNSFLMCGTTYIAVWRKFGKDKEKLLLVLNGVVNMEKQLDGFEGSSKRTRTDDLILGSNIPDEVEILPPKFAKTKGSGKRIKGGKEKAIEQQQKKAILCKSCGLEEWHRRRMKEVRQTR*