AlfalfaGEDB | MsaG044341

M. sativa ssp. caerulea / MsaG044341

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01167.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044341	XP_024628855.1	100.000	61	0	0	1	61	258	318	2.14e-36	134

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044341	sp\|Q8GVE5\|TLP2_ARATH	58.333	60	24	1	2	61	323	381	2.57e-13	65.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044341	tr\|A0A396GTK9\|A0A396GTK9_MEDTR	100.000	61	0	0	1	61	258	318	1.62e-36	133

TFs/TRs:

Gene ID	Type	Classification
MsaG044341	TF	TUB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000910	MsaG044341	0.800217	2.671890e-48	3.630189e-46
MsaG004455	MsaG044341	0.800817	2.019264e-48	2.780987e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044341	MtrunA17_Chr8g0373341	100.000	61	0	0	1	61	258	318	3.11e-40	133
MsaG044341	MtrunA17_Chr8g0373001	67.213	61	19	1	1	61	341	400	1.23e-19	80.1
MsaG044341	MtrunA17_Chr5g0404321	63.333	60	21	1	2	61	346	404	1.75e-17	73.9
MsaG044341	MtrunA17_Chr8g0373351	63.333	60	21	1	2	61	224	282	2.40e-17	72.8
MsaG044341	MtrunA17_Chr8g0373331	62.121	66	19	3	1	61	279	343	3.91e-16	70.1
MsaG044341	MtrunA17_Chr1g0155301	60.000	60	23	1	2	61	352	410	2.56e-15	67.8
MsaG044341	MtrunA17_Chr2g0315641	53.333	60	27	1	2	61	301	359	1.01e-11	57.8
MsaG044341	MtrunA17_Chr8g0373361	54.386	57	25	1	5	61	345	400	2.45e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044341	AT2G18280.2	58.333	60	24	1	2	61	323	381	2.61e-14	65.5
MsaG044341	AT2G18280.1	58.333	60	24	1	2	61	323	381	2.61e-14	65.5
MsaG044341	AT1G53320.1	53.333	60	27	1	2	61	309	367	7.91e-12	58.5
MsaG044341	AT1G47270.3	52.381	63	26	2	2	61	315	376	3.67e-11	56.6
MsaG044341	AT1G47270.2	52.381	63	26	2	2	61	339	400	3.69e-11	56.6
MsaG044341	AT1G47270.1	52.381	63	26	2	2	61	340	401	3.69e-11	56.6

Find 15 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTCTCCTGGAGTGCGAAAA+TGG	0.301102	8:-58803178	MsaT044341.1:CDS
AAATGGCCAATCTTGCAATT+AGG	0.381085	8:-58803161	MsaT044341.1:CDS
GCGCTTCCTAATTGCAAGAT+TGG	0.386393	8:+58803155	None:intergenic
ATCAAGCGATGGCAAAGGCT+TGG	0.482128	8:+58803081	None:intergenic
CGATCTCATAATGTTTCTCC+TGG	0.484646	8:-58803191	MsaT044341.1:CDS
CTTCATGGGCCGTGTTAAAG+TGG	0.489206	8:-58803252	None:intergenic
AAGGCTTGGAAGGCAGAGAA+TGG	0.529766	8:+58803095	None:intergenic
TTGCAATTAGGAAGCGCGGA+TGG	0.532396	8:-58803149	MsaT044341.1:CDS
TGCAATTAGGAAGCGCGGAT+GGG	0.540465	8:-58803148	MsaT044341.1:CDS
AGCGATGGCAAAGGCTTGGA+AGG	0.559015	8:+58803085	None:intergenic
ATATGCAACAAATCAAGCGA+TGG	0.587358	8:+58803070	None:intergenic
ATCGATCAACAACAGCTACA+AGG	0.593016	8:+58803210	None:intergenic
AACAAATCAAGCGATGGCAA+AGG	0.622704	8:+58803076	None:intergenic
TCATAGATTCCACTTTAACA+CGG	0.648935	8:+58803243	None:intergenic
AATCTTGCAATTAGGAAGCG+CGG	0.662669	8:-58803153	MsaT044341.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	58803082	58803270	58803082	ID=MsaG044341
Chr8	mRNA	58803082	58803270	58803082	ID=MsaT044341.1;Parent=MsaG044341
Chr8	exon	58803082	58803270	58803082	ID=MsaT044341.1.exon1;Parent=MsaT044341.1
Chr8	CDS	58803082	58803270	58803082	ID=cds.MsaT044341.1;Parent=MsaT044341.1

Gene Sequence	>MsaT044341.1 ATGGGCCGTGTTAAAGTGGAATCTATGAAAAACTTTGACCTTGTAGCTGTTGTTGATCGATCTCATAATGTTTCTCCTGGAGTGCGAAAATGGCCAATCTTGCAATTAGGAAGCGCGGATGGGAAAGATATCTTCTTCATGCACTACACTTATCCATTCTCTGCCTTCCAAGCCTTTGCCATCGCTTGA
Protein sequence	>MsaT044341.1 MGRVKVESMKNFDLVAVVDRSHNVSPGVRKWPILQLGSADGKDIFFMHYTYPFSAFQAFAIA*

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