AlfalfaGEDB | MsaG044373

M. sativa ssp. caerulea / MsaG044373

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044373	XP_003629519.1	96.262	535	16	1	1	535	1	531	0.0	1069

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044373	sp\|Q8W4F0\|DAR1_ARATH	68.327	562	142	5	1	535	1	553	0.0	735

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044373	tr\|G7LFK8\|G7LFK8_MEDTR	96.262	535	16	1	1	535	1	531	0.0	1069

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TFs/TRs:

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Gene ID	Type	Classification
MsaG044373	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004802	MsaG044373	0.820054	1.471477e-52	3.240981e-50
MsaG012335	MsaG044373	0.822505	4.027511e-53	9.467555e-51
MsaG016670	MsaG044373	0.826894	3.762685e-54	9.975572e-52
MsaG019271	MsaG044373	0.835517	2.922892e-56	9.943593e-54
MsaG022205	MsaG044373	0.800749	2.084490e-48	2.866429e-46
MsaG022563	MsaG044373	0.826880	3.791753e-54	1.004878e-51
MsaG027152	MsaG044373	0.854628	2.093227e-61	1.334422e-58
MsaG028082	MsaG044373	0.878749	4.583037e-69	7.808782e-66
MsaG038035	MsaG044373	0.827403	2.846884e-54	7.655820e-52
MsaG044373	MsaG046305	0.808111	6.189041e-50	1.009865e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044373	MtrunA17_Chr8g0373781	96.262	535	16	1	1	535	1	531	0.0	1069
MsaG044373	MtrunA17_Chr1g0154501	57.757	535	159	8	1	535	1	468	0.0	582
MsaG044373	MtrunA17_Chr5g0436051	65.416	373	119	3	163	535	253	615	3.59e-174	505
MsaG044373	MtrunA17_Chr5g0403261	66.845	374	84	4	1	342	1	366	7.01e-173	492
MsaG044373	MtrunA17_Chr3g0112601	57.271	447	171	6	105	535	70	512	1.67e-166	482
MsaG044373	MtrunA17_Chr5g0403301	73.355	304	57	2	232	535	27	306	1.01e-151	436
MsaG044373	MtrunA17_Chr5g0403271	80.769	156	27	1	380	535	1	153	2.15e-77	240
MsaG044373	MtrunA17_Chr5g0403291	63.441	93	33	1	156	247	374	466	1.05e-34	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044373	AT4G36860.1	68.327	562	142	5	1	535	1	553	0.0	735
MsaG044373	AT4G36860.3	65.641	585	143	5	1	535	1	577	0.0	726
MsaG044373	AT4G36860.2	66.962	451	119	4	1	424	1	448	0.0	587
MsaG044373	AT1G19270.1	53.097	565	201	8	1	535	1	531	0.0	573
MsaG044373	AT1G19270.2	53.097	565	201	8	1	535	1	531	0.0	573
MsaG044373	AT2G39830.3	58.797	449	156	7	111	535	75	518	0.0	520
MsaG044373	AT2G39830.1	66.220	373	121	3	163	535	160	527	1.24e-179	516
MsaG044373	AT2G39830.2	65.691	376	121	4	163	535	160	530	2.69e-177	510
MsaG044373	AT5G66610.1	44.250	513	249	11	28	529	65	551	2.17e-133	399
MsaG044373	AT2G39830.4	65.233	279	94	3	163	440	160	436	5.69e-133	394

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Find 119 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCCATGGCCAATCT+CGG	0.530954	8:+59215800	None:intergenic
AACCAGGCAGTGCTCAAGTA+TGG	0.287660	8:-59213452	MsaT044373.1:CDS
AACCATAAACATTCAGGACG+AGG	0.628809	8:-59216902	MsaT044373.1:CDS
AACTTCCGGTCATTCGGATA+TGG	0.336770	8:+59213411	None:intergenic
AAGCAAAGTCCTCTGGTTTC+AGG	0.302816	8:+59214403	None:intergenic
AAGGCCATACAAAACAAGTA+TGG	0.479856	8:+59214167	None:intergenic
AAGTATCTGTTGCTTGATGA+CGG	0.585206	8:-59214748	MsaT044373.1:CDS
AATATAGAATCAGTTTGAGA+TGG	0.540843	8:+59216141	None:intergenic
AATTGCGATCTCTCTTTCAG+AGG	0.593587	8:-59216687	MsaT044373.1:CDS
ACAAGCACTAAATGAAGCCA+TGG	0.603423	8:-59214584	MsaT044373.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	59213403	59216957	59213403	ID=MsaG044373
Chr8	mRNA	59213403	59216957	59213403	ID=MsaT044373.1;Parent=MsaG044373
Chr8	exon	59213403	59213740	59213403	ID=MsaT044373.1.exon11;Parent=MsaT044373.1
Chr8	CDS	59213403	59213740	59213403	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59213831	59213889	59213831	ID=MsaT044373.1.exon10;Parent=MsaT044373.1
Chr8	CDS	59213831	59213889	59213831	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59214162	59214280	59214162	ID=MsaT044373.1.exon9;Parent=MsaT044373.1
Chr8	CDS	59214162	59214280	59214162	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59214378	59214443	59214378	ID=MsaT044373.1.exon8;Parent=MsaT044373.1
Chr8	CDS	59214378	59214443	59214378	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59214570	59214782	59214570	ID=MsaT044373.1.exon7;Parent=MsaT044373.1
Chr8	CDS	59214570	59214782	59214570	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59214906	59215025	59214906	ID=MsaT044373.1.exon6;Parent=MsaT044373.1
Chr8	CDS	59214906	59215025	59214906	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59215473	59215556	59215473	ID=MsaT044373.1.exon5;Parent=MsaT044373.1
Chr8	CDS	59215473	59215556	59215473	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59215722	59215842	59215722	ID=MsaT044373.1.exon4;Parent=MsaT044373.1
Chr8	CDS	59215722	59215842	59215722	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59216105	59216369	59216105	ID=MsaT044373.1.exon3;Parent=MsaT044373.1
Chr8	CDS	59216105	59216369	59216105	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59216639	59216750	59216639	ID=MsaT044373.1.exon2;Parent=MsaT044373.1
Chr8	CDS	59216639	59216750	59216639	ID=cds.MsaT044373.1;Parent=MsaT044373.1
Chr8	exon	59216847	59216957	59216847	ID=MsaT044373.1.exon1;Parent=MsaT044373.1
Chr8	CDS	59216847	59216957	59216847	ID=cds.MsaT044373.1;Parent=MsaT044373.1

Gene Sequence

>MsaT044373.1

ATGGGCTGGCTTACCAAGTTTCTAAAGGGTTCGAACCATAAACATTCAGGACGAGGATACACCGGGAAATATGGACACGACAGAGATTCGGATAATCATGATAATTCCGCGGATGATTTGAATGATTTTGAGAGAGAAGAAATTGATCGTGCAATTGCGATCTCTCTTTCAGAGGTTACAGAGGAGGTTACAGAGGAAGATCATAAAGGGAAAAAAGTTATCGAAGAAGATTCTGAATCTGAAGATGAGGAGTTGTGTCCACTTGATGACGAGGAAGATGAGCATGTTGCTGATGTTGAACAAAATGAAGGGGACCATGTTGCTAAAATTCAACAGGAAGAAGAAGAAAATGTTGACGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCGTTGGTTCACCTCCTCCATCTCAAACTGATTCTATATTTCAACCTTTTACAAACCTCTTTTCGCCTGTATACAGAATCTGTGCTGGCTGCAATGCCGAGATTGGCCATGGAAGGTTTTTGAGTTGCATGGGAGCTGTATGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTACGAGTATTCCATGTCTGGGAATCGTCCTTACCATAAATTATGCTATAAGGAGCTGCATCACCCAAGGTGTGATGTTTGCAAGATCTTTATCCCACAAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATACTGTCCATCACACGAGCGCGATGGCACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAACGGATACAAAGTATCTGTTGCTTGATGACGGTCGAAAACTGTGTCTTGAGTGTCTCGATTCGGCTATTATGGATACTCATGAATGCCAACCTCTCTATCTTGAAATACAAGAATTTTACGAAGGTTTGCATATGAAAATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTAAATGAAGCCATGGAGGGCGAAAAGAATGGTCATAATCACCATTTACCTGAAACCAGAGGACTTTGCTTGTCAGAAGAGCAAACTGTCCCCACTATTTTAAGGAGACCAAGTATAGGAGCAGGCTACCGTGTCATCGATATGATAACTGAGCCTTTTAGGCTGATACGTCGATGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTACTGACAGGATCAATCCTAGCTCATGAAATGATGCATGCTTGGCTTAGACTTAAAGGCTATGGGAATCTGAGGCCTGAAGTTGAAGAAGGAATATGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCGGCTCCGGAAGTGAAGAAGCATCATCATCTTCATCTTCATCTTCGTCGTCTTCATCATCACCTTCCTCTACATCTTCAAAGAAGGGTAAACGGTCCGATTTTGAGAAGGAACTTGGTAAATTTTTTAAACACCAGATTGAGACAGATAGCTCACCAGCCTATGGAGATGGATTTAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGGCTTAGACGGACTCTTGACCATATCCGAATGACCGGAAGTTTTCCATAA

Protein sequence

>MsaT044373.1

MGWLTKFLKGSNHKHSGRGYTGKYGHDRDSDNHDNSADDLNDFEREEIDRAIAISLSEVTEEVTEEDHKGKKVIEEDSESEDEELCPLDDEEDEHVADVEQNEGDHVAKIQQEEEENVDEVQLEEDEQLARAIQESLSVGSPPPSQTDSIFQPFTNLFSPVYRICAGCNAEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKLCYKELHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHNHHLPETRGLCLSEEQTVPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSGSGSEEASSSSSSSSSSSSSPSSTSSKKGKRSDFEKELGKFFKHQIETDSSPAYGDGFREGNQAVLKYGLRRTLDHIRMTGSFP*