Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044379 | XP_013446424.1 | 87.347 | 490 | 52 | 4 | 1 | 480 | 1 | 490 | 0.0 | 871 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044379 | sp|O64827|SUVR5_ARATH | 50.254 | 197 | 96 | 2 | 252 | 448 | 729 | 923 | 4.32e-54 | 199 |
MsaG044379 | sp|O64827|SUVR5_ARATH | 41.353 | 133 | 70 | 2 | 45 | 169 | 411 | 543 | 6.21e-20 | 97.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044379 | tr|A0A072TTG4|A0A072TTG4_MEDTR | 87.347 | 490 | 52 | 4 | 1 | 480 | 1 | 490 | 0.0 | 871 |
Gene ID | Type | Classification |
---|---|---|
MsaG044379 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000210 | MsaG044379 | 0.809930 | 2.535112e-50 | 4.321864e-48 |
MsaG000431 | MsaG044379 | 0.825920 | 6.404095e-54 | 1.652564e-51 |
MsaG000519 | MsaG044379 | 0.847874 | 1.658267e-59 | 8.362986e-57 |
MsaG000926 | MsaG044379 | 0.802494 | 9.178810e-49 | 1.313244e-46 |
MsaG003394 | MsaG044379 | 0.807700 | 7.561455e-50 | 1.221689e-47 |
MsaG003468 | MsaG044379 | 0.829042 | 1.151344e-54 | 3.241966e-52 |
MsaG004108 | MsaG044379 | 0.803063 | 7.010373e-49 | 1.016183e-46 |
MsaG004890 | MsaG044379 | 0.805527 | 2.162878e-49 | 3.319383e-47 |
MsaG005154 | MsaG044379 | 0.828989 | 1.185874e-54 | 3.334094e-52 |
MsaG005202 | MsaG044379 | 0.847737 | 1.808107e-59 | 9.076285e-57 |
MsaG005966 | MsaG044379 | 0.803738 | 5.089221e-49 | 7.493201e-47 |
MsaG006074 | MsaG044379 | 0.809273 | 3.502674e-50 | 5.877242e-48 |
MsaG006248 | MsaG044379 | 0.803756 | 5.045682e-49 | 7.432104e-47 |
MsaG006500 | MsaG044379 | 0.823312 | 2.617493e-53 | 6.288824e-51 |
MsaG006601 | MsaG044379 | 0.804518 | 3.507681e-49 | 5.258723e-47 |
MsaG007356 | MsaG044379 | 0.818449 | 3.400778e-52 | 7.180892e-50 |
MsaG008017 | MsaG044379 | 0.809020 | 3.965843e-50 | 6.614337e-48 |
MsaG008229 | MsaG044379 | 0.808032 | 6.430901e-50 | 1.047374e-47 |
MsaG009212 | MsaG044379 | 0.807974 | 6.615511e-50 | 1.075928e-47 |
MsaG009655 | MsaG044379 | 0.811599 | 1.108009e-50 | 1.967602e-48 |
MsaG010460 | MsaG044379 | 0.819911 | 1.586037e-52 | 3.479987e-50 |
MsaG011090 | MsaG044379 | 0.826289 | 5.238912e-54 | 1.365727e-51 |
MsaG011584 | MsaG044379 | 0.817539 | 5.446708e-52 | 1.123425e-49 |
MsaG011603 | MsaG044379 | 0.810293 | 2.119241e-50 | 3.644969e-48 |
MsaG012190 | MsaG044379 | 0.828449 | 1.599180e-54 | 4.428809e-52 |
MsaG012423 | MsaG044379 | 0.823661 | 2.170987e-53 | 5.265833e-51 |
MsaG012424 | MsaG044379 | 0.827715 | 2.398169e-54 | 6.505907e-52 |
MsaG041966 | MsaG044379 | 0.832041 | 2.142263e-55 | 6.576673e-53 |
MsaG042380 | MsaG044379 | 0.826859 | 3.835928e-54 | 1.016002e-51 |
MsaG042407 | MsaG044379 | 0.808423 | 5.314270e-50 | 8.736553e-48 |
MsaG042408 | MsaG044379 | 0.806860 | 1.136947e-49 | 1.800568e-47 |
MsaG043659 | MsaG044379 | 0.826566 | 4.503020e-54 | 1.182975e-51 |
MsaG043663 | MsaG044379 | 0.824449 | 1.420803e-53 | 3.520755e-51 |
MsaG043808 | MsaG044379 | 0.807655 | 7.729479e-50 | 1.247438e-47 |
MsaG044375 | MsaG044379 | 0.835751 | 2.552586e-56 | 8.744402e-54 |
MsaG044376 | MsaG044379 | 0.904369 | 3.096734e-79 | 2.054043e-75 |
MsaG044377 | MsaG044379 | 0.959684 | 3.671757e-117 | 1.855520e-111 |
MsaG044379 | MsaG044380 | 0.903491 | 7.677501e-79 | 4.831655e-75 |
MsaG044379 | MsaG044472 | 0.819311 | 2.170375e-52 | 4.687594e-50 |
MsaG044379 | MsaG044693 | 0.810389 | 2.020875e-50 | 3.484046e-48 |
MsaG044379 | MsaG044928 | 0.805506 | 2.185169e-49 | 3.351910e-47 |
MsaG044379 | MsaG045380 | 0.826728 | 4.122095e-54 | 1.087815e-51 |
MsaG044379 | MsaG046311 | 0.816226 | 1.070162e-51 | 2.134097e-49 |
MsaG044379 | MsaG046588 | 0.825178 | 9.582769e-54 | 2.422399e-51 |
MsaG044379 | MsaG046912 | 0.800879 | 1.960972e-48 | 2.704482e-46 |
MsaG044379 | MsaG001257 | 0.803185 | 6.618435e-49 | 9.620817e-47 |
MsaG044379 | MsaG002035 | 0.805630 | 2.058313e-49 | 3.166645e-47 |
MsaG044379 | MsaG007590 | 0.841207 | 1.013409e-57 | 4.109217e-55 |
MsaG044379 | MsaG011183 | 0.812613 | 6.677109e-51 | 1.215756e-48 |
MsaG044379 | MsaG013967 | 0.833296 | 1.049200e-55 | 3.340961e-53 |
MsaG044379 | MsaG012034 | 0.806236 | 1.537594e-49 | 2.399572e-47 |
MsaG044379 | MsaG014993 | 0.806510 | 1.346730e-49 | 2.115385e-47 |
MsaG044379 | MsaG018864 | 0.807893 | 6.881958e-50 | 1.117097e-47 |
MsaG044379 | MsaG020132 | 0.818854 | 2.754153e-52 | 5.877301e-50 |
MsaG044379 | MsaG024084 | 0.816071 | 1.158851e-51 | 2.301757e-49 |
MsaG044379 | MsaG028289 | 0.808676 | 4.694001e-50 | 7.764481e-48 |
MsaG044379 | MsaG032261 | 0.813020 | 5.443998e-51 | 1.001359e-48 |
MsaG044379 | MsaG031025 | 0.805601 | 2.087427e-49 | 3.209162e-47 |
MsaG044379 | MsaG032473 | 0.816774 | 8.076662e-52 | 1.633390e-49 |
MsaG044379 | MsaG032474 | 0.820690 | 1.053019e-52 | 2.358532e-50 |
MsaG044379 | MsaG036205 | 0.861810 | 1.560744e-63 | 1.300133e-60 |
MsaG044379 | MsaG039501 | 0.830636 | 4.728804e-55 | 1.393572e-52 |
MsaG044379 | MsaG035272 | 0.826690 | 4.208212e-54 | 1.109364e-51 |
MsaG044379 | MsaG036984 | 0.825318 | 8.885423e-54 | 2.254756e-51 |
MsaG013657 | MsaG044379 | 0.809694 | 2.847582e-50 | 4.827054e-48 |
MsaG014953 | MsaG044379 | 0.801344 | 1.577148e-48 | 2.198133e-46 |
MsaG014926 | MsaG044379 | 0.800673 | 2.159078e-48 | 2.964035e-46 |
MsaG014927 | MsaG044379 | 0.803910 | 4.688070e-49 | 6.930016e-47 |
MsaG015148 | MsaG044379 | 0.805358 | 2.346248e-49 | 3.586769e-47 |
MsaG015705 | MsaG044379 | 0.819346 | 2.131147e-52 | 4.607229e-50 |
MsaG017050 | MsaG044379 | 0.818471 | 3.361549e-52 | 7.102108e-50 |
MsaG017194 | MsaG044379 | 0.819809 | 1.673123e-52 | 3.661062e-50 |
MsaG018341 | MsaG044379 | 0.809799 | 2.703403e-50 | 4.594456e-48 |
MsaG018343 | MsaG044379 | 0.808830 | 4.353821e-50 | 7.228234e-48 |
MsaG018380 | MsaG044379 | 0.806762 | 1.192325e-49 | 1.883993e-47 |
MsaG018498 | MsaG044379 | 0.836358 | 1.793233e-56 | 6.256697e-54 |
MsaG018644 | MsaG044379 | 0.841129 | 1.062162e-57 | 4.296376e-55 |
MsaG019140 | MsaG044379 | 0.812201 | 8.205877e-51 | 1.478870e-48 |
MsaG019137 | MsaG044379 | 0.839076 | 3.623479e-57 | 1.374240e-54 |
MsaG019977 | MsaG044379 | 0.814627 | 2.418203e-51 | 4.630723e-49 |
MsaG020395 | MsaG044379 | 0.815495 | 1.555147e-51 | 3.044042e-49 |
MsaG020812 | MsaG044379 | 0.813384 | 4.533519e-51 | 8.414995e-49 |
MsaG021626 | MsaG044379 | 0.815937 | 1.240678e-51 | 2.455999e-49 |
MsaG021765 | MsaG044379 | 0.802853 | 7.745478e-49 | 1.117279e-46 |
MsaG023924 | MsaG044379 | 0.807072 | 1.025801e-49 | 1.632723e-47 |
MsaG024010 | MsaG044379 | 0.807043 | 1.040540e-49 | 1.655028e-47 |
MsaG024291 | MsaG044379 | 0.815077 | 1.923639e-51 | 3.725757e-49 |
MsaG026624 | MsaG044379 | 0.814045 | 3.246962e-51 | 6.127556e-49 |
MsaG026985 | MsaG044379 | 0.823977 | 1.832524e-53 | 4.482832e-51 |
MsaG027211 | MsaG044379 | 0.847801 | 1.736744e-59 | 8.737362e-57 |
MsaG027984 | MsaG044379 | 0.807172 | 9.773876e-50 | 1.559342e-47 |
MsaG029204 | MsaG044379 | 0.804447 | 3.629647e-49 | 5.432505e-47 |
MsaG029324 | MsaG044379 | 0.814212 | 2.984406e-51 | 5.655818e-49 |
MsaG029461 | MsaG044379 | 0.830355 | 5.533970e-55 | 1.617932e-52 |
MsaG030471 | MsaG044379 | 0.809544 | 3.065430e-50 | 5.177741e-48 |
MsaG031799 | MsaG044379 | 0.849568 | 5.651575e-60 | 3.018670e-57 |
MsaG034836 | MsaG044379 | 0.806060 | 1.673285e-49 | 2.600429e-47 |
MsaG035057 | MsaG044379 | 0.824864 | 1.136000e-53 | 2.846990e-51 |
MsaG035532 | MsaG044379 | 0.813053 | 5.353390e-51 | 9.855150e-49 |
MsaG035533 | MsaG044379 | 0.808325 | 5.573261e-50 | 9.140788e-48 |
MsaG035552 | MsaG044379 | 0.837380 | 9.863825e-57 | 3.549532e-54 |
MsaG037865 | MsaG044379 | 0.805255 | 2.465079e-49 | 3.759353e-47 |
MsaG037866 | MsaG044379 | 0.803461 | 5.805740e-49 | 8.493299e-47 |
MsaG039962 | MsaG044379 | 0.805148 | 2.594604e-49 | 3.947179e-47 |
MsaG041011 | MsaG044379 | 0.811173 | 1.369829e-50 | 2.407248e-48 |
MsaG041039 | MsaG044379 | 0.830173 | 6.129111e-55 | 1.782615e-52 |
MsaG041256 | MsaG044379 | 0.814242 | 2.938967e-51 | 5.573999e-49 |
MsaG041253 | MsaG044379 | 0.801307 | 1.604654e-48 | 2.234561e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044379 | MtrunA17_Chr8g0373841 | 87.347 | 490 | 52 | 4 | 1 | 480 | 1 | 490 | 0.0 | 871 |
MsaG044379 | MtrunA17_Chr4g0075321 | 59.236 | 314 | 103 | 3 | 39 | 345 | 384 | 679 | 2.48e-114 | 362 |
MsaG044379 | MtrunA17_Chr5g0403241 | 58.271 | 266 | 100 | 5 | 218 | 475 | 817 | 1079 | 4.07e-91 | 303 |
MsaG044379 | MtrunA17_Chr5g0403241 | 41.096 | 146 | 79 | 1 | 56 | 194 | 507 | 652 | 2.81e-26 | 113 |
MsaG044379 | MtrunA17_Chr8g0373821 | 59.756 | 246 | 51 | 2 | 20 | 228 | 6 | 240 | 2.20e-87 | 278 |
MsaG044379 | MtrunA17_Chr4g0075341 | 34.586 | 266 | 69 | 5 | 58 | 322 | 205 | 366 | 3.22e-35 | 135 |
MsaG044379 | MtrunA17_Chr4g0075341 | 56.897 | 58 | 25 | 0 | 58 | 115 | 55 | 112 | 3.62e-14 | 73.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044379 | AT2G23740.1 | 50.254 | 197 | 96 | 2 | 252 | 448 | 722 | 916 | 4.14e-55 | 199 |
MsaG044379 | AT2G23740.1 | 41.353 | 133 | 70 | 2 | 45 | 169 | 404 | 536 | 5.67e-21 | 97.4 |
MsaG044379 | AT2G23740.3 | 50.254 | 197 | 96 | 2 | 252 | 448 | 729 | 923 | 4.40e-55 | 199 |
MsaG044379 | AT2G23740.3 | 41.353 | 133 | 70 | 2 | 45 | 169 | 411 | 543 | 6.32e-21 | 97.4 |
MsaG044379 | AT2G23740.6 | 50.254 | 197 | 96 | 2 | 252 | 448 | 729 | 923 | 4.40e-55 | 199 |
MsaG044379 | AT2G23740.6 | 41.353 | 133 | 70 | 2 | 45 | 169 | 411 | 543 | 6.32e-21 | 97.4 |
MsaG044379 | AT2G23740.2 | 50.254 | 197 | 96 | 2 | 252 | 448 | 729 | 923 | 4.40e-55 | 199 |
MsaG044379 | AT2G23740.2 | 41.353 | 133 | 70 | 2 | 45 | 169 | 411 | 543 | 6.32e-21 | 97.4 |
MsaG044379 | AT2G23740.4 | 50.254 | 197 | 96 | 2 | 252 | 448 | 729 | 923 | 4.86e-55 | 199 |
MsaG044379 | AT2G23740.4 | 41.353 | 133 | 70 | 2 | 45 | 169 | 411 | 543 | 5.63e-21 | 97.4 |
MsaG044379 | AT2G23740.5 | 50.254 | 197 | 96 | 2 | 252 | 448 | 729 | 923 | 4.86e-55 | 199 |
MsaG044379 | AT2G23740.5 | 41.353 | 133 | 70 | 2 | 45 | 169 | 411 | 543 | 5.63e-21 | 97.4 |
Find 93 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCTTCAGATAGAGCCTTTC+TGG | 0.146763 | 8:+59325054 | None:intergenic |
TCCAAACCTCTTTCAAATTT+AGG | 0.154205 | 8:+59325241 | None:intergenic |
GGCGAAACGCTCAAGCTTTC+CGG | 0.154625 | 8:-59325919 | MsaT044379.1:CDS |
ATTCCTTGTGGTTGTCATTT+TGG | 0.199979 | 8:-59325607 | MsaT044379.1:CDS |
TTGATCTCCAATGGACTTTC+CGG | 0.248032 | 8:+59325994 | None:intergenic |
CCAGCCTCATGCAGATAAAT+TGG | 0.273277 | 8:-59325125 | MsaT044379.1:CDS |
TTGGAAATATAGAGGAATTA+TGG | 0.274132 | 8:-59325588 | MsaT044379.1:CDS |
GGCAAATAAGTTGCTTGAAA+TGG | 0.279485 | 8:-59325161 | MsaT044379.1:CDS |
CCTCTTTCAAATTTAGGATT+AGG | 0.281407 | 8:+59325247 | None:intergenic |
TTCTTCGCAAAGAACATCTT+TGG | 0.285228 | 8:-59325940 | MsaT044379.1:CDS |
ACGCAAATATGTTCTTCATT+AGG | 0.299340 | 8:+59326435 | None:intergenic |
CTTGACATTGTCGACCCTTT+TGG | 0.303194 | 8:+59326328 | None:intergenic |
TCCTAAATTTGAAAGAGGTT+TGG | 0.365758 | 8:-59325242 | MsaT044379.1:CDS |
TGTACGAGATATTGAATTTG+AGG | 0.372830 | 8:+59326089 | None:intergenic |
CCATCATCAAGCTGCTCATA+TGG | 0.373746 | 8:-59325353 | MsaT044379.1:CDS |
GCCTGTCCACTGATCATTAC+CGG | 0.388651 | 8:+59325900 | None:intergenic |
GCAGTTGTACCTCCACAAAA+TGG | 0.390067 | 8:+59326195 | None:intergenic |
TCCAATGGTTGCCAAGTGTT+TGG | 0.392168 | 8:+59325782 | None:intergenic |
GCAAATAAGTTGCTTGAAAT+GGG | 0.399729 | 8:-59325160 | MsaT044379.1:CDS |
AAGAGACACTATGGGCAGTT+TGG | 0.400556 | 8:-59325655 | MsaT044379.1:CDS |
AGTCTTTGCAAATCAGGCTC+TGG | 0.401375 | 8:+59326031 | None:intergenic |
CGATCTAGCCAGCAGGCGCT+TGG | 0.413605 | 8:-59325326 | MsaT044379.1:CDS |
ACACCAAGTCTTTGCAAATC+AGG | 0.417723 | 8:+59326025 | None:intergenic |
GGAAGAATCTCAATGCTTAG+AGG | 0.420258 | 8:-59325104 | MsaT044379.1:CDS |
AGTTATCGAAAGCTTAAATT+CGG | 0.424504 | 8:+59325540 | None:intergenic |
CCTAATCCTAAATTTGAAAG+AGG | 0.427935 | 8:-59325247 | MsaT044379.1:CDS |
GTTTGGAAGAAGCATCAAAT+AGG | 0.428853 | 8:-59325225 | MsaT044379.1:CDS |
AGACTTGGTGTTTGTACATC+CGG | 0.429428 | 8:-59326013 | MsaT044379.1:CDS |
ATCGAAAGCTTAAATTCGGC+AGG | 0.430592 | 8:+59325544 | None:intergenic |
TTTCATGACTTTCCATCCAA+TGG | 0.430775 | 8:+59325767 | None:intergenic |
CCAATTTATCTGCATGAGGC+TGG | 0.431124 | 8:+59325125 | None:intergenic |
ACTCTTTGCCAAGCGCCTGC+TGG | 0.443750 | 8:+59325318 | None:intergenic |
CAGTGACAGTTCATCTGTAA+TGG | 0.451819 | 8:-59326370 | MsaT044379.1:CDS |
GTTCGCGGAAGTTTAGTTGC+AGG | 0.454226 | 8:-59325417 | MsaT044379.1:CDS |
TAATTTCAAGAATAGAAATC+AGG | 0.462085 | 8:-59325182 | MsaT044379.1:CDS |
TTCTCCTAAAATGATTGAGC+AGG | 0.465200 | 8:-59325485 | MsaT044379.1:CDS |
TGATGATGGCGACCGAGATC+AGG | 0.469915 | 8:+59325367 | None:intergenic |
GTCTTTGCAAATCAGGCTCT+GGG | 0.470035 | 8:+59326032 | None:intergenic |
ACCAAACACTTGGCAACCAT+TGG | 0.477256 | 8:-59325783 | MsaT044379.1:CDS |
GACTCTTATAGAAAACCAAA+AGG | 0.481717 | 8:-59326343 | MsaT044379.1:CDS |
CCATATGAGCAGCTTGATGA+TGG | 0.488631 | 8:+59325353 | None:intergenic |
TGAGAGTGCTGTTAAGTGTA+AGG | 0.490329 | 8:-59325830 | MsaT044379.1:CDS |
TTGGATGGAAAGTCATGAAA+AGG | 0.491304 | 8:-59325764 | MsaT044379.1:CDS |
TCATCATTGACGATTGACTC+TGG | 0.492547 | 8:+59325970 | None:intergenic |
AGTGAAGGAATCAAAACAAA+AGG | 0.493161 | 8:+59325708 | None:intergenic |
CATGTTCAGAAGAGACACTA+TGG | 0.495523 | 8:-59325664 | MsaT044379.1:CDS |
ACATCTGCACAAAGCTGAGA+TGG | 0.500567 | 8:-59326118 | MsaT044379.1:CDS |
GAGATATTGAATTTGAGGTC+TGG | 0.501478 | 8:+59326094 | None:intergenic |
CAGTGCGTGAGAACCGCAAT+TGG | 0.508352 | 8:-59326282 | MsaT044379.1:CDS |
GTTTCGTTTATCTACCAGAA+AGG | 0.508712 | 8:-59325068 | MsaT044379.1:CDS |
TATGCTCAGAGACTAAAATC+TGG | 0.515386 | 8:-59325283 | MsaT044379.1:CDS |
GAGCCTGATTTGCAAAGACT+TGG | 0.521361 | 8:-59326028 | MsaT044379.1:CDS |
TTCAAATTTAGGATTAGGAC+GGG | 0.522702 | 8:+59325252 | None:intergenic |
ATTAGCTTTAGCCCTTCTCC+TGG | 0.523241 | 8:+59325201 | None:intergenic |
TCCGGTAATGATCAGTGGAC+AGG | 0.523358 | 8:-59325901 | MsaT044379.1:CDS |
TGGAGCGCGATCTAGCCAGC+AGG | 0.523628 | 8:-59325333 | MsaT044379.1:CDS |
AGCAGGCGCTTGGCAAAGAG+TGG | 0.523735 | 8:-59325316 | MsaT044379.1:CDS |
ACAAATCAAGGAGCAGCTTA+CGG | 0.524363 | 8:-59326459 | MsaT044379.1:CDS |
CAATATCTCGTACATTAAAG+AGG | 0.524991 | 8:-59326080 | MsaT044379.1:CDS |
GACTCTGGATTGATCTCCAA+TGG | 0.529884 | 8:+59325985 | None:intergenic |
CTGAGAATCGAAGTGGTTCG+CGG | 0.530378 | 8:-59325432 | MsaT044379.1:CDS |
GTGTATATTGTTACCAATTG+CGG | 0.530995 | 8:+59326269 | None:intergenic |
TGTACATCCGGAAAGTCCAT+TGG | 0.533385 | 8:-59326001 | MsaT044379.1:CDS |
CATCAAATAGGACCAGGAGA+AGG | 0.534319 | 8:-59325213 | MsaT044379.1:CDS |
TTTGATTTACTACCTGATCT+CGG | 0.536142 | 8:-59325379 | MsaT044379.1:CDS |
AACACTTGGCAACCATTGGA+TGG | 0.536290 | 8:-59325779 | MsaT044379.1:CDS |
TTTCAAATTTAGGATTAGGA+CGG | 0.543514 | 8:+59325251 | None:intergenic |
ATCAAATAGGACCAGGAGAA+GGG | 0.546017 | 8:-59325212 | MsaT044379.1:CDS |
TTTATCTGCATGAGGCTGGA+TGG | 0.546716 | 8:+59325129 | None:intergenic |
TCTTCCAATTTATCTGCATG+AGG | 0.563398 | 8:+59325121 | None:intergenic |
GATTGCTCTGAGACAAATCA+AGG | 0.567116 | 8:-59326471 | MsaT044379.1:CDS |
GACAGTTCATCTGTAATGGA+AGG | 0.570153 | 8:-59326366 | MsaT044379.1:CDS |
ACCAGAAAGGCTCTATCTGA+AGG | 0.579442 | 8:-59325055 | MsaT044379.1:CDS |
CATCTGCACAAAGCTGAGAT+GGG | 0.579947 | 8:-59326117 | MsaT044379.1:CDS |
ACTCTTATAGAAAACCAAAA+GGG | 0.580021 | 8:-59326342 | MsaT044379.1:CDS |
TGGACAGGCTCTCCTAGCTA+TGG | 0.583120 | 8:-59325886 | MsaT044379.1:CDS |
TTATGATCATTACCATAGCT+AGG | 0.583706 | 8:+59325874 | None:intergenic |
TGTGGAGGTACAACTGCTGC+TGG | 0.586893 | 8:-59326189 | MsaT044379.1:CDS |
TCTCCTAAAATGATTGAGCA+GGG | 0.608885 | 8:-59325484 | MsaT044379.1:CDS |
GAAGCACAGTGGTTGTTCAG+AGG | 0.608970 | 8:-59325742 | MsaT044379.1:CDS |
GATAATTCTGAGAATCGAAG+TGG | 0.614192 | 8:-59325439 | MsaT044379.1:CDS |
AGCTTTCCGGTAATGATCAG+TGG | 0.616263 | 8:-59325906 | MsaT044379.1:CDS |
CATATATCGAAGACAAGGGA+AGG | 0.617551 | 8:-59326305 | MsaT044379.1:CDS |
GAGCAACTAACATTGTCTAC+CGG | 0.626990 | 8:-59325514 | MsaT044379.1:CDS |
TCAAGCATATATCGAAGACA+AGG | 0.630094 | 8:-59326310 | MsaT044379.1:CDS |
ACAGTTCATCTGTAATGGAA+GGG | 0.632090 | 8:-59326365 | MsaT044379.1:CDS |
AAGAAGCATCAAATAGGACC+AGG | 0.634670 | 8:-59325219 | MsaT044379.1:CDS |
ATGTTCAGAAGAGACACTAT+GGG | 0.654163 | 8:-59325663 | MsaT044379.1:CDS |
TCGAAAGCTTAAATTCGGCA+GGG | 0.657128 | 8:+59325545 | None:intergenic |
AAAGCTGAACAAAATTGCAG+TGG | 0.668916 | 8:-59326057 | MsaT044379.1:CDS |
CAAGCATATATCGAAGACAA+GGG | 0.692685 | 8:-59326309 | MsaT044379.1:CDS |
TTTCCAAAATGACAACCACA+AGG | 0.715599 | 8:+59325604 | None:intergenic |
GTCATGAAAAGGAAGCACAG+TGG | 0.767507 | 8:-59325753 | MsaT044379.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 59325036 | 59326511 | 59325036 | ID=MsaG044379 |
Chr8 | mRNA | 59325036 | 59326511 | 59325036 | ID=MsaT044379.1;Parent=MsaG044379 |
Chr8 | exon | 59325036 | 59326511 | 59325036 | ID=MsaT044379.1.exon1;Parent=MsaT044379.1 |
Chr8 | CDS | 59325036 | 59326511 | 59325036 | ID=cds.MsaT044379.1;Parent=MsaT044379.1 |
Gene Sequence |
Protein sequence |