AlfalfaGEDB | MsaG044434

M. sativa ssp. caerulea / MsaG044434

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044434	XP_003629577.1	81.439	264	47	2	1	262	1	264	1.35e-144	416

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044434	sp\|Q9FKZ3\|LBD36_ARATH	42.982	114	63	2	8	119	7	120	1.54e-22	97.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044434	tr\|G7LGC9\|G7LGC9_MEDTR	81.439	264	47	2	1	262	1	264	6.46e-145	416

TFs/TRs:

Gene ID	Type	Classification
MsaG044434	TF	LOB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002063	MsaG044434	0.800430	2.418994e-48	3.302563e-46
MsaG003684	MsaG044434	0.803020	7.156152e-49	1.036278e-46
MsaG004841	MsaG044434	0.834533	5.160547e-56	1.704653e-53
MsaG005138	MsaG044434	0.801956	1.182857e-48	1.671654e-46
MsaG005690	MsaG044434	0.801969	1.175714e-48	1.662049e-46
MsaG006633	MsaG044434	0.802317	9.979443e-49	1.422038e-46
MsaG006679	MsaG044434	0.822138	4.896345e-53	1.139716e-50
MsaG006710	MsaG044434	0.834208	6.220542e-56	2.034855e-53
MsaG006841	MsaG044434	0.802047	1.133337e-48	1.604974e-46
MsaG007291	MsaG044434	0.810965	1.518885e-50	2.655594e-48
MsaG009156	MsaG044434	0.829653	8.192692e-55	2.347642e-52
MsaG011764	MsaG044434	0.803253	6.408535e-49	9.330188e-47
MsaG042050	MsaG044434	0.807950	6.694361e-50	1.088113e-47
MsaG043354	MsaG044434	0.818157	3.956961e-52	8.292632e-50
MsaG044434	MsaG018508	0.801458	1.494690e-48	2.088600e-46
MsaG044434	MsaG027478	0.808634	4.792423e-50	7.918890e-48
MsaG044434	MsaG032723	0.812974	5.570345e-51	1.023419e-48
MsaG044434	MsaG031909	0.803577	5.492536e-49	8.056852e-47
MsaG044434	MsaG041359	0.824873	1.130177e-53	2.833108e-51
MsaG044434	MsaG044505	0.802435	9.436304e-49	1.348271e-46
MsaG015248	MsaG044434	0.806259	1.520234e-49	2.373828e-47
MsaG016377	MsaG044434	0.811580	1.118658e-50	1.985575e-48
MsaG017203	MsaG044434	0.800485	2.357355e-48	3.222394e-46
MsaG019540	MsaG044434	0.825781	6.907892e-54	1.775588e-51
MsaG020627	MsaG044434	0.817439	5.734454e-52	1.179769e-49
MsaG020632	MsaG044434	0.814673	2.362257e-51	4.528926e-49
MsaG020862	MsaG044434	0.811025	1.474238e-50	2.581343e-48
MsaG021078	MsaG044434	0.811824	9.904161e-51	1.768547e-48
MsaG021781	MsaG044434	0.826567	4.499950e-54	1.182213e-51
MsaG021783	MsaG044434	0.807320	9.093263e-50	1.455869e-47
MsaG021836	MsaG044434	0.844269	1.570123e-58	7.023846e-56
MsaG024752	MsaG044434	0.821619	6.447925e-53	1.480234e-50
MsaG026787	MsaG044434	0.816490	9.345898e-52	1.876318e-49
MsaG029311	MsaG044434	0.802163	1.072853e-48	1.523355e-46
MsaG031267	MsaG044434	0.806792	1.174725e-49	1.857496e-47
MsaG034544	MsaG044434	0.811625	1.093990e-50	1.943886e-48
MsaG035731	MsaG044434	0.807162	9.820974e-50	1.566484e-47
MsaG035836	MsaG044434	0.813836	3.609204e-51	6.776016e-49
MsaG037117	MsaG044434	0.830973	3.912028e-55	1.164166e-52
MsaG037734	MsaG044434	0.800395	2.459424e-48	3.355072e-46
MsaG039061	MsaG044434	0.806159	1.595753e-49	2.485715e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044434	MtrunA17_Chr8g0374601	81.439	264	47	2	1	262	19	282	2.14e-148	416
MsaG044434	MtrunA17_Chr8g0374591	66.949	118	37	1	1	116	1	118	2.22e-50	161
MsaG044434	MtrunA17_Chr8g0374581	47.399	173	83	5	1	169	1	169	1.64e-43	147
MsaG044434	MtrunA17_Chr3g0097221	47.826	115	57	3	8	119	7	121	1.17e-27	107
MsaG044434	MtrunA17_Chr5g0402611	43.363	113	62	2	8	118	8	120	2.84e-26	104
MsaG044434	MtrunA17_Chr3g0115431	42.727	110	61	2	8	115	9	118	6.59e-25	99.0
MsaG044434	MtrunA17_Chr6g0449651	37.500	104	63	2	8	109	67	170	5.82e-19	82.4
MsaG044434	MtrunA17_Chr4g0058651	38.462	104	62	2	8	109	11	114	7.81e-19	81.6
MsaG044434	MtrunA17_Chr7g0227511	36.792	106	65	2	8	111	11	116	8.13e-19	81.3
MsaG044434	MtrunA17_Chr2g0311601	39.806	103	60	2	6	106	11	113	4.22e-18	79.0
MsaG044434	MtrunA17_Chr3g0106101	37.624	101	61	2	8	106	7	107	7.24e-18	79.0
MsaG044434	MtrunA17_Chr5g0437571	40.594	101	58	2	8	106	6	106	7.51e-18	78.6
MsaG044434	MtrunA17_Chr3g0117121	38.462	104	62	2	8	109	10	113	7.53e-18	79.3
MsaG044434	MtrunA17_Chr3g0114061	39.604	101	59	2	8	106	8	108	8.80e-18	78.2
MsaG044434	MtrunA17_Chr6g0449641	37.864	103	62	2	8	108	9	111	1.02e-17	77.8
MsaG044434	MtrunA17_Chr8g0353981	46.479	71	37	1	8	77	7	77	2.52e-17	78.6
MsaG044434	MtrunA17_Chr4g0043421	37.302	126	74	4	8	131	15	137	3.48e-17	77.0
MsaG044434	MtrunA17_Chr4g0030001	35.938	128	64	5	4	113	20	147	4.17e-17	77.0
MsaG044434	MtrunA17_Chr4g0055441	39.806	103	57	3	9	107	3	104	1.63e-16	74.7
MsaG044434	MtrunA17_Chr5g0438091	37.143	105	57	2	8	103	39	143	2.50e-16	75.1
MsaG044434	MtrunA17_Chr3g0129071	37.736	106	64	2	6	109	45	150	2.73e-16	75.9
MsaG044434	MtrunA17_Chr5g0432451	37.815	119	64	3	6	114	41	159	1.68e-15	73.6
MsaG044434	MtrunA17_Chr6g0460941	41.772	79	43	3	1	77	1	78	6.70e-15	68.6
MsaG044434	MtrunA17_Chr5g0444351	31.304	115	70	2	4	109	1	115	1.95e-14	68.9
MsaG044434	MtrunA17_Chr1g0200201	36.000	100	62	2	9	106	73	172	2.12e-14	70.5
MsaG044434	MtrunA17_Chr7g0225111	33.962	106	68	2	4	107	1	106	2.22e-14	67.8
MsaG044434	MtrunA17_Chr6g0460951	33.333	105	60	3	5	99	37	141	1.20e-13	68.6
MsaG044434	MtrunA17_Chr8g0342351	32.039	103	68	1	9	109	13	115	2.29e-13	68.2
MsaG044434	MtrunA17_Chr5g0437401	36.275	102	63	2	9	108	12	113	3.12e-13	66.2
MsaG044434	MtrunA17_Chr4g0040831	32.407	108	66	2	7	113	14	115	4.01e-13	66.6
MsaG044434	MtrunA17_Chr2g0326041	51.064	47	23	0	3	49	28	74	4.94e-13	63.5
MsaG044434	MtrunA17_Chr1g0184281	33.083	133	73	4	8	124	15	147	7.38e-13	65.9
MsaG044434	MtrunA17_Chr6g0452671	31.897	116	66	4	7	111	10	123	2.36e-12	64.3
MsaG044434	MtrunA17_Chr6g0452691	41.538	65	37	1	9	72	10	74	3.40e-12	63.5
MsaG044434	MtrunA17_Chr6g0452661	36.986	73	42	2	5	73	3	75	2.17e-11	62.4
MsaG044434	MtrunA17_Chr2g0330201	36.364	66	42	0	7	72	18	83	2.53e-11	62.8
MsaG044434	MtrunA17_Chr3g0113891	41.429	70	40	1	9	77	15	84	6.25e-11	60.1
MsaG044434	MtrunA17_Chr4g0059901	37.879	66	41	0	7	72	9	74	9.19e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044434	AT5G66870.1	42.982	114	63	2	8	119	7	120	1.56e-23	97.4
MsaG044434	AT2G23660.2	42.727	110	61	2	8	115	5	114	4.19e-22	93.6
MsaG044434	AT2G23660.3	42.727	110	61	2	8	115	5	114	4.19e-22	93.6
MsaG044434	AT2G23660.1	42.727	110	61	2	8	115	5	114	4.19e-22	93.6
MsaG044434	AT3G26660.1	38.614	101	55	2	9	108	6	100	6.55e-20	83.2
MsaG044434	AT3G26620.1	38.614	101	55	2	9	108	6	100	7.50e-20	83.2
MsaG044434	AT5G63090.4	39.423	104	61	2	8	109	11	114	3.18e-19	83.2
MsaG044434	AT5G63090.3	39.423	104	61	2	8	109	11	114	3.18e-19	83.2
MsaG044434	AT5G63090.2	39.423	104	61	2	8	109	11	114	3.18e-19	83.2
MsaG044434	AT5G63090.1	39.423	104	61	2	8	109	11	114	3.18e-19	83.2
MsaG044434	AT1G65620.1	43.396	106	58	2	8	111	9	114	5.96e-19	82.8
MsaG044434	AT1G65620.4	43.396	106	58	2	8	111	9	114	5.96e-19	82.8
MsaG044434	AT1G65620.3	43.396	106	58	2	8	111	9	114	5.96e-19	82.8
MsaG044434	AT1G65620.5	43.396	106	58	2	8	111	9	114	5.96e-19	82.8
MsaG044434	AT1G65620.2	43.396	106	58	2	8	111	9	114	5.96e-19	82.8
MsaG044434	AT2G30130.1	40.594	101	58	2	8	106	8	108	1.15e-18	82.0
MsaG044434	AT1G07900.1	36.792	106	58	3	3	99	28	133	3.57e-18	80.5
MsaG044434	AT3G27650.1	38.462	104	62	2	8	109	39	142	6.39e-18	79.0
MsaG044434	AT2G28500.1	37.143	105	57	3	4	99	51	155	1.42e-17	79.7
MsaG044434	AT1G16530.1	37.500	104	62	3	6	106	12	115	1.66e-16	75.5
MsaG044434	AT2G30340.2	36.792	106	65	2	6	109	51	156	3.01e-16	76.6
MsaG044434	AT1G31320.1	46.479	71	37	1	8	77	13	83	3.04e-16	74.7
MsaG044434	AT2G30340.1	36.792	106	65	2	6	109	50	155	3.55e-16	76.6
MsaG044434	AT2G40470.2	37.069	116	71	2	6	119	18	133	1.47e-15	73.6
MsaG044434	AT3G50510.1	34.483	116	56	2	5	109	9	115	3.59e-15	72.4
MsaG044434	AT3G50510.2	34.483	116	56	2	5	109	9	115	3.59e-15	72.4
MsaG044434	AT2G40470.1	37.069	116	71	2	6	119	43	158	3.86e-15	72.8
MsaG044434	AT1G72980.1	34.000	100	64	1	9	106	14	113	7.04e-15	72.0
MsaG044434	AT5G35900.1	31.731	104	69	1	9	110	6	109	1.12e-12	65.9
MsaG044434	AT3G47870.1	33.333	105	68	1	9	111	37	141	1.72e-12	66.6
MsaG044434	AT3G03760.1	33.636	110	63	4	8	107	51	160	6.67e-12	64.7
MsaG044434	AT3G11090.1	33.000	100	65	2	9	106	12	111	1.05e-11	62.4
MsaG044434	AT1G06280.1	36.364	66	42	0	7	72	23	88	9.02e-11	60.5

Find 70 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATGTTCTTGTTCGTGATTC+TGG	0.092323	8:-60184274	MsaT044434.1:CDS
ATCTCTCTTATTATTCTTGT+TGG	0.231044	8:+60184149	None:intergenic
TACCTTGAAGGTCATTTCTT+TGG	0.258996	8:+60184683	None:intergenic
CTCGCCTTTCCTGATTGTTT+CGG	0.296820	8:-60184577	MsaT044434.1:CDS
ATGTTCTTGTTCGTGATTCT+GGG	0.333393	8:-60184273	MsaT044434.1:CDS
ATCAAGGTACACTCTGTGTT+TGG	0.360225	8:-60184820	MsaT044434.1:CDS
TGAACAAGTTATTGAATCAT+TGG	0.367700	8:-60184749	MsaT044434.1:CDS
GACCTGAGGACTGAGGTATT+TGG	0.383512	8:+60184612	None:intergenic
TTAAAACAAAAGCTTCTTAG+TGG	0.403319	8:-60184442	MsaT044434.1:CDS
ATAGTATCAGCCCTAGAAAA+AGG	0.404708	8:+60184193	None:intergenic
AGATGCTTGCATGCTGCGCA+CGG	0.410315	8:+60184910	None:intergenic
TTGACAGAACCACCACCAAT+AGG	0.414297	8:+60184334	None:intergenic
GTTCGTGATTCTGGGTTGGC+AGG	0.416595	8:-60184265	MsaT044434.1:CDS
GGCTTAAAGCCGAAACAATC+AGG	0.421196	8:+60184568	None:intergenic
GAGGAACGTCGGGAAGCATA+TGG	0.427266	8:+60184239	None:intergenic
ATAGTCGATGCAGATGCATT+TGG	0.432023	8:+60184547	None:intergenic
GAGGCGGGTTGAGGACTCTA+TGG	0.432182	8:-60184716	MsaT044434.1:CDS
CAAGAACATCAGCACCCATC+TGG	0.437219	8:+60184287	None:intergenic
ATGAAACGCTCCGGATTGTC+AGG	0.439135	8:+60184841	None:intergenic
ATTGGTGGTGGTTCTGTCAA+TGG	0.446383	8:-60184331	MsaT044434.1:CDS
GTATGAGTCGAGGCGGGTTG+AGG	0.446873	8:-60184725	MsaT044434.1:CDS
AGCATGCAAGCATCTCCGTC+AGG	0.456773	8:-60184902	MsaT044434.1:CDS
CTTCATTCAACCTACCTTGA+AGG	0.457276	8:+60184671	None:intergenic
AGTACTAAGTCCCACCCTAT+TGG	0.458721	8:-60184349	MsaT044434.1:CDS
GACAGTCGATGCAAGACAAT+TGG	0.458838	8:-60184524	MsaT044434.1:CDS
AGTGGCCCCGATGGTGATGA+TGG	0.469173	8:-60184424	MsaT044434.1:CDS
CAGGAACATTAACATCCATC+TGG	0.471455	8:+60184389	None:intergenic
GATGGTGATGATGGGTTAGC+AGG	0.475686	8:-60184415	MsaT044434.1:CDS
GTCCAAAGAAATGACCTTCA+AGG	0.477311	8:-60184685	MsaT044434.1:CDS
TGACAGAACCACCACCAATA+GGG	0.490016	8:+60184335	None:intergenic
TTACTTTCCACCTGACAATC+CGG	0.490172	8:-60184851	MsaT044434.1:CDS
GGATTGTCAGGTGGAAAGTA+AGG	0.497768	8:+60184853	None:intergenic
GCATCAACATGAGGAACGTC+GGG	0.507797	8:+60184229	None:intergenic
GCTAACCCATCATCACCATC+GGG	0.507921	8:+60184418	None:intergenic
GGCCAAATACCTCAGTCCTC+AGG	0.517957	8:-60184614	MsaT044434.1:CDS
TGCTAACCCATCATCACCAT+CGG	0.521414	8:+60184417	None:intergenic
GATGCTTGCATGCTGCGCAC+GGG	0.523329	8:+60184911	None:intergenic
GTTAATGTTCCTGTTGAAAA+CGG	0.528434	8:-60184379	MsaT044434.1:CDS
AGGAACGTCGGGAAGCATAT+GGG	0.553787	8:+60184240	None:intergenic
TGAGTCGTCAACTCAGCAGC+TGG	0.557390	8:+60184487	None:intergenic
AAGTCCCACCCTATTGGTGG+TGG	0.560438	8:-60184343	MsaT044434.1:CDS
CAAAAGTGTGAAGAACGAAC+TGG	0.569336	8:-60184635	MsaT044434.1:CDS
ACTAAGTCCCACCCTATTGG+TGG	0.579669	8:-60184346	MsaT044434.1:CDS
CAATCCGGAGCGTTTCATCA+AGG	0.580538	8:-60184836	MsaT044434.1:CDS
TCTTGTTCGTGATTCTGGGT+TGG	0.583224	8:-60184269	MsaT044434.1:CDS
AAGCTTCTTAGTGGCCCCGA+TGG	0.587409	8:-60184433	MsaT044434.1:CDS
TGACTCGGCAAGATTCCAGA+TGG	0.587492	8:-60184302	MsaT044434.1:CDS
AGCATCAACATGAGGAACGT+CGG	0.589738	8:+60184228	None:intergenic
TGTCAATGGCAGTAGTGACT+CGG	0.589855	8:-60184317	MsaT044434.1:CDS
AGCTTGAGTCGCACTCCTGA+CGG	0.594185	8:+60184887	None:intergenic
ATTGGTGTATGAGTCGAGGC+GGG	0.595725	8:-60184731	MsaT044434.1:CDS
TGTACCTTGATGAAACGCTC+CGG	0.604580	8:+60184832	None:intergenic
CAGAACCACCACCAATAGGG+TGG	0.611871	8:+60184338	None:intergenic
GACTCGGCAAGATTCCAGAT+GGG	0.616618	8:-60184301	MsaT044434.1:CDS
TAGGTTGAATGAAGTTCGAA+CGG	0.624296	8:-60184662	MsaT044434.1:CDS
AAAGAAATGACCTTCAAGGT+AGG	0.624918	8:-60184681	MsaT044434.1:CDS
AAAGCCGAAACAATCAGGAA+AGG	0.640067	8:+60184573	None:intergenic
CATTGGTGTATGAGTCGAGG+CGG	0.642100	8:-60184732	MsaT044434.1:CDS
GTCGTCAACTCAGCAGCTGG+CGG	0.642102	8:+60184490	None:intergenic
TGGGTTAGCAGGATTCCAGA+TGG	0.646029	8:-60184404	MsaT044434.1:CDS
AAACGCTCCGGATTGTCAGG+TGG	0.648048	8:+60184844	None:intergenic
AGAACCACCACCAATAGGGT+GGG	0.649851	8:+60184339	None:intergenic
GTGGCCCCGATGGTGATGAT+GGG	0.652149	8:-60184423	MsaT044434.1:CDS
AATCATTGGTGTATGAGTCG+AGG	0.661385	8:-60184735	MsaT044434.1:CDS
AGAACAAATTGAACGACCTG+AGG	0.665667	8:+60184598	None:intergenic
AGGGCTGATACTATTGACAA+TGG	0.685373	8:-60184184	MsaT044434.1:CDS
ACAGAAGGAGCATCAACATG+AGG	0.691100	8:+60184220	None:intergenic
ATTGAACGACCTGAGGACTG+AGG	0.711426	8:+60184605	None:intergenic
AATGTTCCTGTTGAAAACGG+TGG	0.735325	8:-60184376	MsaT044434.1:CDS
CTAACCCATCATCACCATCG+GGG	0.785753	8:+60184419	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	60184159	60184953	60184159	ID=MsaG044434
Chr8	mRNA	60184159	60184953	60184159	ID=MsaT044434.1;Parent=MsaG044434
Chr8	exon	60184159	60184953	60184159	ID=MsaT044434.1.exon1;Parent=MsaT044434.1
Chr8	CDS	60184159	60184953	60184159	ID=cds.MsaT044434.1;Parent=MsaT044434.1

Gene Sequence

>MsaT044434.1

ATGGCAAGAGTGATTATTCGCCCGTGCGCAGCATGCAAGCATCTCCGTCAGGAGTGCGACTCAAGCTGTGACGTTGCTCCTTACTTTCCACCTGACAATCCGGAGCGTTTCATCAAGGTACACTCTGTGTTTGGAAAGAACAATGTGTCGAATATGTTCAAAAAACTTGATGTTTCACATCATGAACAAGTTATTGAATCATTGGTGTATGAGTCGAGGCGGGTTGAGGACTCTATGGTCATGCGAGTCCAAAGAAATGACCTTCAAGGTAGGTTGAATGAAGTTCGAACGGAACTCAAAAGTGTGAAGAACGAACTGGCCAAATACCTCAGTCCTCAGGTCGTTCAATTTGTTCTCGCCTTTCCTGATTGTTTCGGCTTTAAGCCAAATGCATCTGCATCGACTATGACAGTCGATGCAAGACAATTGGCTTTTAATCAGCCGCCAGCTGCTGAGTTGACGACTCAACAGATTCACAACTTAGAAGTGTTAAAACAAAAGCTTCTTAGTGGCCCCGATGGTGATGATGGGTTAGCAGGATTCCAGATGGATGTTAATGTTCCTGTTGAAAACGGTGGCACTAGTACTAAGTCCCACCCTATTGGTGGTGGTTCTGTCAATGGCAGTAGTGACTCGGCAAGATTCCAGATGGGTGCTGATGTTCTTGTTCGTGATTCTGGGTTGGCAGGATCCCATATGCTTCCCGACGTTCCTCATGTTGATGCTCCTTCTGTGCTTCCTTTTTCTAGGGCTGATACTATTGACAATGGTGATACTAGCAACCAACAAGAATAA

Protein sequence

>MsaT044434.1

MARVIIRPCAACKHLRQECDSSCDVAPYFPPDNPERFIKVHSVFGKNNVSNMFKKLDVSHHEQVIESLVYESRRVEDSMVMRVQRNDLQGRLNEVRTELKSVKNELAKYLSPQVVQFVLAFPDCFGFKPNASASTMTVDARQLAFNQPPAAELTTQQIHNLEVLKQKLLSGPDGDDGLAGFQMDVNVPVENGGTSTKSHPIGGGSVNGSSDSARFQMGADVLVRDSGLAGSHMLPDVPHVDAPSVLPFSRADTIDNGDTSNQQE*