AlfalfaGEDB | MsaG044526

M. sativa ssp. caerulea / MsaG044526

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022622 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0047484 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090696 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901000 GO:1901001 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044526	XP_013457460.1	94.265	279	7	3	1	278	1	271	0.0	521

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044526	sp\|Q9FDW1\|MYB44_ARATH	54.480	279	92	7	2	251	3	275	8.52e-83	254

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044526	tr\|A0A072UQ69\|A0A072UQ69_MEDTR	94.265	279	7	3	1	278	1	271	0.0	521

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TFs/TRs:

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Gene ID	Type	Classification
MsaG044526	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044526	MtrunA17_Chr4g0053431	94.265	279	7	3	1	278	1	271	0.0	521
MsaG044526	MtrunA17_Chr5g0401731	52.711	332	85	9	1	277	11	325	2.47e-105	309
MsaG044526	MtrunA17_Chr6g0454921	79.091	110	23	0	1	110	11	120	3.38e-62	195
MsaG044526	MtrunA17_Chr3g0133601	78.095	105	23	0	1	105	33	137	1.36e-56	181
MsaG044526	MtrunA17_Chr5g0437321	74.257	101	26	0	2	102	16	116	1.12e-49	165
MsaG044526	MtrunA17_Chr4g0008551	70.874	103	30	0	3	105	36	138	1.93e-49	166
MsaG044526	MtrunA17_Chr4g0042501	58.416	101	42	0	5	105	105	205	6.95e-38	138
MsaG044526	MtrunA17_Chr3g0139671	53.211	109	51	0	4	112	84	192	1.14e-37	141
MsaG044526	MtrunA17_Chr5g0417621	57.426	101	43	0	5	105	134	234	1.68e-37	137
MsaG044526	MtrunA17_Chr6g0460671	52.679	112	53	0	4	115	98	209	1.97e-37	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044526	AT5G67300.1	54.480	279	92	7	2	251	3	275	8.66e-84	254
MsaG044526	AT4G37260.1	53.546	282	81	9	1	249	9	273	1.18e-83	254
MsaG044526	AT2G23290.1	50.909	275	99	6	1	251	9	271	1.09e-76	236
MsaG044526	AT3G50060.1	48.000	275	109	6	2	251	3	268	8.55e-74	228
MsaG044526	AT3G55730.1	71.963	107	30	0	3	109	54	160	1.64e-50	171
MsaG044526	AT3G09230.1	48.087	183	83	3	2	179	52	227	3.63e-47	162
MsaG044526	AT2G39880.1	67.961	103	33	0	3	105	48	150	9.19e-47	160
MsaG044526	AT3G09370.1	56.731	104	45	0	2	105	127	230	9.09e-38	139
MsaG044526	AT3G09370.2	56.731	104	45	0	2	105	132	235	9.85e-38	139
MsaG044526	AT3G09370.3	56.731	104	45	0	2	105	140	243	1.25e-37	139

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Find 88 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCACGATGCTCAACTTG+AGG	0.613981	8:-61576890	None:intergenic
AAATTTGAGTGGTGAATTTA+TGG	0.181948	8:+61577414	MsaT044526.1:CDS
AACCGCTGTAACTGTCGTAA+CGG	0.545884	8:+61577345	MsaT044526.1:CDS
AACTGTCGTAACGGCTTCAG+TGG	0.591862	8:+61577354	MsaT044526.1:CDS
AATGTTTCTGCTAAGCCAAT+TGG	0.360539	8:+61577526	MsaT044526.1:CDS
ACAAAACTCGTTGATCGTTA+CGG	0.493663	8:+61576782	MsaT044526.1:CDS
ACAATAGCCCGTTTGTTATC+GGG	0.419316	8:+61576974	MsaT044526.1:CDS
ACAGGCAAACGAATCGGAAC+AGG	0.431816	8:-61577181	None:intergenic
ACAGTTACAGCGGTTGTTGG+AGG	0.552327	8:-61577337	None:intergenic
ACCGTAACCTCCATCGCCTC+CGG	0.524352	8:-61577220	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	61576734	61577570	61576734	ID=MsaG044526
Chr8	mRNA	61576734	61577570	61576734	ID=MsaT044526.1;Parent=MsaG044526
Chr8	exon	61576734	61577570	61576734	ID=MsaT044526.1.exon1;Parent=MsaT044526.1
Chr8	CDS	61576734	61577570	61576734	ID=cds.MsaT044526.1;Parent=MsaT044526.1

Gene Sequence

>MsaT044526.1

ATGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAAGACGAATCCTTAACAAAACTCGTTGATCGTTACGGTCCTCGTAACTGGTCACTCATCAGCCGTGCTATTCCTGGCAGAAGTGGTAAATCTTGCAGGCTGAGATGGTGTAATCAGCTTTCTCCTCAAGTTGAGCATCGTGCTTTTTCTCCTGAAGAAGATAACATCATTATCAGAGCCCATGCTCAGTTCGGTAACAAATGGGCCACAATAGCCCGTTTGTTATCGGGCCGAACCGATAACGCTATCAAAAACCACTGGAATTCGACACTGAAACGGAAGTGTTCGTCTCTCATCGGTTCCGATGATCGTGATTTCAATCCTCAGCCGCTTAAACGCTCTGCTTCCGTCGGTGCTCCGGGGAGTCCTTCTGGTTCTGATTTAAGCGATTCTGGTGTTCAAACTGTTTTTCGTCCTGTTCCGATTCGTTTGCCTGTTGAAACTACATCGGAGCCGGAGGCGATGGAGGTTACGGTGCCGGAGGCAGTGGAGGAGGATGACGGTCCTTTAACTTCGCTGTCGCTTTCTCTACCAGGTGTGGATGCTGCTGCGACGGTGCCGGTTAGTCCTCCTCCAACAACCGCTGTAACTGTCGTAACGGCTTCAGTGGCGGCGAAAGTTTCTGAAGAAGCTGGAATTGGAGCGTTAAATTTGAGTGGTGAATTTATGGCGGTTATGCAAGAGATGATAAAGAATGAAGTGAGGAGTTATATGGAAGAGAGAAATGGAATGTGTTTTCAAGGAGTTGATAGGCTTAGAAATGTTTCTGCTAAGCCAATTGGGATTAACAGGGTTGATGGATGA

Protein sequence

>MsaT044526.1

MDRIKGPWSPEEDESLTKLVDRYGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFSPEEDNIIIRAHAQFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSLIGSDDRDFNPQPLKRSASVGAPGSPSGSDLSDSGVQTVFRPVPIRLPVETTSEPEAMEVTVPEAVEEDDGPLTSLSLSLPGVDAAATVPVSPPPTTAVTVVTASVAAKVSEEAGIGALNLSGEFMAVMQEMIKNEVRSYMEERNGMCFQGVDRLRNVSAKPIGINRVDG*