AlfalfaGEDB | MsaG044538

M. sativa ssp. caerulea / MsaG044538

KEGG: -
GO: -
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044538	XP_013457476.1	82.414	870	128	11	1	864	1	851	0.0	1390

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044538	sp\|O22187\|Y2232_ARATH	43.873	816	382	18	8	798	16	780	0.0	602

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044538	tr\|A0A072UPA5\|A0A072UPA5_MEDTR	82.414	870	128	11	1	864	1	851	0.0	1390

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG044538	MtrunA17_Chr4g0053571	82.414	870	128	11	1	864	1	851	1390
MsaG044538	MtrunA17_Chr4g0053561	79.278	859	106	5	1	858	1	788	1349
MsaG044538	MtrunA17_Chr4g0053521	74.383	851	182	10	3	835	560	1392	1191
MsaG044538	MtrunA17_Chr4g0053521	75.242	517	111	5	1	514	1	503	732
MsaG044538	MtrunA17_Chr4g0053591	82.213	506	78	3	354	858	2	496	823
MsaG044538	MtrunA17_Chr6g0468691	46.388	789	362	23	30	793	27	779	604
MsaG044538	MtrunA17_Chr1g0202711	44.106	789	377	20	30	797	45	790	599
MsaG044538	MtrunA17_Chr4g0030441	42.674	860	417	23	7	828	9	830	590
MsaG044538	MtrunA17_Chr2g0318301	43.116	828	428	17	26	835	27	829	585
MsaG044538	MtrunA17_Chr8g0352381	43.596	773	398	17	29	789	62	808	581

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044538	AT2G23200.1	43.873	816	382	18	8	798	16	780	0.0	602
MsaG044538	AT5G24010.1	44.321	810	379	19	3	788	5	766	0.0	585
MsaG044538	AT2G21480.1	43.632	793	385	19	22	789	47	802	0.0	580
MsaG044538	AT4G39110.1	43.959	778	398	17	25	789	51	803	0.0	579
MsaG044538	AT5G54380.1	41.415	862	455	17	1	834	1	840	0.0	578
MsaG044538	AT5G61350.1	43.123	807	390	22	30	793	32	812	0.0	572
MsaG044538	AT3G46290.1	43.346	819	417	22	25	831	24	807	0.0	568
MsaG044538	AT5G59700.1	43.075	787	406	16	9	788	8	759	0.0	557
MsaG044538	AT1G30570.1	38.333	840	457	18	25	826	26	842	1.74e-172	521
MsaG044538	AT3G04690.1	40.606	825	424	27	1	789	1	795	2.36e-167	508

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Find 167 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTGTGCCGGGTTC+AGG	0.323584	8:-61696147	MsaT044538.1:CDS
AAACTTGTTTGAGGGTAAGT+GGG	0.531837	8:+61697599	None:intergenic
AAAGAAGATTAGTCTTCCTG+TGG	0.604185	8:-61696499	MsaT044538.1:CDS
AAATCTGATGTTTATTCTTT+TGG	0.151712	8:-61695688	MsaT044538.1:CDS
AAATTCACCGTTTCAGTTCC+TGG	0.289122	8:-61697401	MsaT044538.1:CDS
AACAATGGTTGATGTGTTGT+GGG	0.521753	8:-61695446	MsaT044538.1:CDS
AACCTCCGTCTTAACGTTGG+TGG	0.538038	8:-61697113	MsaT044538.1:CDS
AACGCAAATGATGATGTTTG+AGG	0.576664	8:+61697272	None:intergenic
AACGCTCAGAATTATACTGG+TGG	0.674417	8:-61697014	MsaT044538.1:CDS
AACTTGTTTGAGGGTAAGTG+GGG	0.606548	8:+61697600	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	61695189	61697783	61695189	ID=MsaG044538
Chr8	mRNA	61695189	61697783	61695189	ID=MsaT044538.1;Parent=MsaG044538
Chr8	exon	61695189	61697783	61695189	ID=MsaT044538.1.exon1;Parent=MsaT044538.1
Chr8	CDS	61695189	61697783	61695189	ID=cds.MsaT044538.1;Parent=MsaT044538.1

Gene Sequence

>MsaT044538.1

ATGGCAATTCAATACTCTATCATCTTACTAACTTTTCTTCTTCAATTCTTATCATTACAATTTCCCTCACTCGGATACGATCACCAAGACACATACTTCATCAATTGCGGATCAGATATCACTGCTACTGAAAGTAACAACGTTTATATCGGTGAATCAAACCCCACTTACCCTCAAACAAGTTTCAGCAACAGCAACATAGAAACCAATCAATCATCATCAGTGCCTTCACCTCTTTACCAAACAGCACGGATATTCCATTCCAATTCTTCATACGAATTCAAAACCGTACCAAACAACACATACATGGTACGTTTCCATTTCTTTTCATTCTTTTCACCAACTAACCTTTCCACTGCAAAATTCACCGTTTCAGTTCCTGGCTTCCTTCTGTTACAAAATTTCGACGCTGAAAACACCACCAACTCTCCTTTAGTAAAAGAGTATTACGTTAAAATCATTCAAAAAAGATTCAAAATCACTTTCACACCTCAAACATCATCATTTGCGTTTGTTAATGCAATAGAACTCTTTATGCTCCCTGTTCATTTAATCCCCGATTCAATAGCTCGTTTCAATTACATTGGTTCTACTGGTCTTTTCCTTTCTACTTATAGTAATGATTTCCTCTCTCGATCGTTAGAAACCAACCTCCGTCTTAACGTTGGTGGGGGAACTGTTGATAGAGGAACTGATACTTTATCGAGAGAATGGTTACCAGATGACAGTTATATAACTAATCCACAAAACGCTCAGAATTATACTGGTGGTACGATTGAACGCACTGCAAATGATACATCTGATGGTCCAAATTCAAATATATACATTGCTCCAGACGCTGTTTATGAATCTGCCAAAGAAAGCAAAAACGCTACTCAAGGTTTAAACATAAGTTGGAGTGTTCCTGTTGAGAAGAATATTGATCATTTCCTTAGGCTTCACTTTTGTGACATTTTTAATGATAGACAAAATGGTCTTACAACTTTCATTCTCTACATTTATGACACTTATGTTGCGATTGTAAATGATGACATATTATTGTCATCCGTGTTGCATGATCCTTATTATTATGACTTTGTGATTTGTTCCGATGGCTCAGGTATATTGAAGGTTAGCGTTGTACCTAATACGTCGATTGAGGTTTCTAGACCGAATGCGTTTTTAAACGGGCTAGAACTAATGACAGTGATTAAATCGTCCGGTCCAATTCCCTTAGATGGTTTGGATTCCGATTCTCCCTTAGATGGTTTGGATTCCGATTCAAAGAAGATTAGTCTTCCTGTGGTTGTGGGTTCAGTGAGTGGAGGTTTAGTTTTGGTTTCTGTTGTGATGGTTTTGTTTCTTTGGATAAGAAAAATCAGGAAACAAAGGCATGTTGAGAGTTTCGATTTGTTGCCGATTCCAACTGCTGCAGGAGGGATTTCTCATAGCAAATTAACTTATGGAAAAACAACTCAAGGCTCACCTATACCTAACATAAACCTTGGCATGAAAATCTCCTTGCTTGACCTTCAAATCGCCACGGAGAATTTTGATACGAAGAGGATTATTGGAAAGGGTGGTTTTGGAAATGTTTATAAGGGAGTTCTCAAGAATGGAATGAATGTGGCAGTGAAAAGAAGTGTGCCGGGTTCAGGTCAAGGACATCATGAATTTCAAACTGAGATAATGGTTTTGTCCAAGATTCGTCACACGCACCTTGTTTCCTTAATAGGGTATTGTGATGAAAGGTGTGAGATGATACTTGTTTATGAGTACATGGAAAATGGTACACTTAGAGAGAATTTGTACAATACAAATTTGCCTTGTTTGACTTGGAAGCAAAGGCTTGAGATTTGCATTGGTGCTGCTAGAGGTCTTCATTACCTTCACAAAGGAGTAGCTGGTGGAATAATCCACCGTGATGTGAAATCCACCAATATATTGCTTGACGAGAATCTTGTAGCTAAAGTTGCTGATTTTGGTCTTTCAAGGACAGGTCCTCTTGATCAACATTCTTATGTCAGCACATGTGTTAAAGGGACTTTTGGGTATCTTGATCCTGATTACTTCAGATCACAACAGCTTACAGAAAAATCTGATGTTTATTCTTTTGGGGTGGTTCTACTTGAGGTGTTGTGCGCAAGACCAGCCATCGAATTGTCTTGTCCAAGTGAGCAAATCAATTTGGCTGAGTGGGGATTGCTTTGCAAAGACAAAGGGATACTTGAAGAAATCATTGATCCTTCCATCAAGGCACAAATTAATCAAAACTCACTAAGAATATTTAGTGAGACTGTGGAAAAATGCTTACACGAGTATGGTTGTGATAGGCCAACAATGGTTGATGTGTTGTGGGACTTGGAATATGCTTTGCAGCTTCAGAGAGAAACACATGAGGATAGTTCTAGCAGTGCTTTTGCATCACTTCAATTGCCTAATGTTCAGCGTTTACCTTCTCTGTCTGCACTGACTGAAGTGGATGGCACGTCTACTGGGAGGGTTGATGAATCTGAAAGTGCAGCGTTGATGATGCTAGACAGAATTTCATGCGAAGCAAATCAAGGTACAACAATCAACACGCAAGTGTCTCCACTTGAGGAGCTGTTTGTTTAG

Protein sequence

>MsaT044538.1

MAIQYSIILLTFLLQFLSLQFPSLGYDHQDTYFINCGSDITATESNNVYIGESNPTYPQTSFSNSNIETNQSSSVPSPLYQTARIFHSNSSYEFKTVPNNTYMVRFHFFSFFSPTNLSTAKFTVSVPGFLLLQNFDAENTTNSPLVKEYYVKIIQKRFKITFTPQTSSFAFVNAIELFMLPVHLIPDSIARFNYIGSTGLFLSTYSNDFLSRSLETNLRLNVGGGTVDRGTDTLSREWLPDDSYITNPQNAQNYTGGTIERTANDTSDGPNSNIYIAPDAVYESAKESKNATQGLNISWSVPVEKNIDHFLRLHFCDIFNDRQNGLTTFILYIYDTYVAIVNDDILLSSVLHDPYYYDFVICSDGSGILKVSVVPNTSIEVSRPNAFLNGLELMTVIKSSGPIPLDGLDSDSPLDGLDSDSKKISLPVVVGSVSGGLVLVSVVMVLFLWIRKIRKQRHVESFDLLPIPTAAGGISHSKLTYGKTTQGSPIPNINLGMKISLLDLQIATENFDTKRIIGKGGFGNVYKGVLKNGMNVAVKRSVPGSGQGHHEFQTEIMVLSKIRHTHLVSLIGYCDERCEMILVYEYMENGTLRENLYNTNLPCLTWKQRLEICIGAARGLHYLHKGVAGGIIHRDVKSTNILLDENLVAKVADFGLSRTGPLDQHSYVSTCVKGTFGYLDPDYFRSQQLTEKSDVYSFGVVLLEVLCARPAIELSCPSEQINLAEWGLLCKDKGILEEIIDPSIKAQINQNSLRIFSETVEKCLHEYGCDRPTMVDVLWDLEYALQLQRETHEDSSSSAFASLQLPNVQRLPSLSALTEVDGTSTGRVDESESAALMMLDRISCEANQGTTINTQVSPLEELFV*