AlfalfaGEDB | MsaG044566

M. sativa ssp. caerulea / MsaG044566

KEGG: -
GO: GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009965 GO:0010016 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0060776 GO:0099402 GO:1905392
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044566	XP_003608484.1	98.283	233	4	0	1	233	1	233	2.29e-166	468

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044566	sp\|Q9SZE8\|LBD39_ARATH	58.233	249	79	8	1	233	1	240	2.55e-82	248

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044566	tr\|G7JDY0\|G7JDY0_MEDTR	98.283	233	4	0	1	233	1	233	1.09e-166	468

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TFs/TRs:

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Gene ID	Type	Classification
MsaG044566	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000015	MsaG044566	0.813553	4.163394e-51	7.760876e-49
MsaG000030	MsaG044566	0.832254	1.898300e-55	5.863430e-53
MsaG000045	MsaG044566	0.839670	2.544737e-57	9.831616e-55
MsaG000062	MsaG044566	0.838068	6.578530e-57	2.417884e-54
MsaG000070	MsaG044566	0.821074	8.600138e-53	1.946055e-50
MsaG000083	MsaG044566	0.914681	3.574925e-84	4.616519e-80
MsaG000113	MsaG044566	0.878553	5.369587e-69	9.065282e-66
MsaG000151	MsaG044566	0.866263	6.500092e-65	6.459715e-62
MsaG000153	MsaG044566	0.881014	7.226830e-70	1.367347e-66
MsaG000188	MsaG044566	0.851308	1.845116e-60	1.046170e-57

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044566	MtrunA17_Chr4g0053911	98.283	233	4	0	1	233	1	233	2.11e-170	468
MsaG044566	MtrunA17_Chr5g0401401	71.008	238	57	5	1	233	1	231	2.18e-111	319
MsaG044566	MtrunA17_Chr7g0215281	61.417	127	46	1	1	124	3	129	5.47e-55	178
MsaG044566	MtrunA17_Chr6g0457431	55.319	141	51	1	1	141	3	131	9.50e-53	167
MsaG044566	MtrunA17_Chr1g0207471	63.566	129	43	1	1	129	1	125	2.89e-52	167
MsaG044566	MtrunA17_Chr6g0469271	60.550	109	41	1	1	107	3	111	1.54e-46	154
MsaG044566	MtrunA17_Chr6g0470651	51.667	120	54	3	1	118	3	120	8.73e-42	142
MsaG044566	MtrunA17_Chr6g0470631	49.194	124	59	3	1	122	3	124	1.13e-40	139
MsaG044566	MtrunA17_Chr1g0209841	50.000	120	46	3	1	118	3	110	1.73e-37	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044566	AT4G37540.1	58.233	249	79	8	1	233	1	240	2.59e-83	248
MsaG044566	AT3G49940.1	57.540	252	81	7	1	232	1	246	1.30e-82	247
MsaG044566	AT5G67420.2	54.331	254	91	7	1	233	1	250	1.26e-75	229
MsaG044566	AT5G67420.1	54.331	254	91	7	1	233	1	250	1.26e-75	229
MsaG044566	AT1G67100.1	66.667	111	37	0	1	111	3	113	8.13e-54	173
MsaG044566	AT3G02550.1	49.718	177	73	4	1	173	3	167	3.80e-52	170
MsaG044566	AT1G68510.1	63.462	104	38	0	1	104	3	106	2.87e-48	159

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Find 68 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGGGATTGGAGATCGG+TGG	0.696279	8:-62086595	MsaT044566.1:CDS
AAATAATTACCTGGTCTCTG+TGG	0.626571	8:+62087181	None:intergenic
AAATCAAGATTAATCGCCGC+TGG	0.534004	8:+62086719	None:intergenic
AACCCTGTGAACGGTGCTGT+TGG	0.557626	8:-62087004	MsaT044566.1:CDS
AAGATTCGCGATCCGAATTT+CGG	0.249148	8:-62086818	MsaT044566.1:CDS
AAGCAAACGGAGGAGATCGG+AGG	0.657755	8:-62086756	MsaT044566.1:CDS
AATAGAAACATGAGTTGCAA+TGG	0.497518	8:-62087361	None:intergenic
ACCAGCTCGACCAAAGAATT+TGG	0.305659	8:+62087234	None:intergenic
ACGACGGCGTGTTTAGAAAC+TGG	0.362464	8:-62086611	MsaT044566.1:CDS
ACGGTGCTGTTGGACTTCTT+TGG	0.315165	8:-62086994	MsaT044566.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	62086553	62087374	62086553	ID=MsaG044566
Chr8	mRNA	62086553	62087374	62086553	ID=MsaT044566.1;Parent=MsaG044566
Chr8	exon	62086553	62087070	62086553	ID=MsaT044566.1.exon2;Parent=MsaT044566.1
Chr8	CDS	62086553	62087070	62086553	ID=cds.MsaT044566.1;Parent=MsaT044566.1
Chr8	exon	62087191	62087374	62087191	ID=MsaT044566.1.exon1;Parent=MsaT044566.1
Chr8	CDS	62087191	62087374	62087191	ID=cds.MsaT044566.1;Parent=MsaT044566.1

Gene Sequence

>MsaT044566.1

ATGAGTTGCAATGGGTGCCGAGTTCTTCGAAAAGGTTGCAGTGAGTCATGTATTTTACGACCTTGCTTGCAATGGATCGAAACTCCAGAAGCTCAAGGCCACGCTACTGTTTTCGTAGCCAAATTCTTTGGTCGAGCTGGTCTCATGTCCTTCATTTCTAACGTCCCTGAACCACAGAGACCAGCTCTGTTTCAGTCTCTACTGTTTGAAGCGTGTGGAAGAACGGTTAACCCTGTGAACGGTGCTGTTGGACTTCTTTGGACTGGAAACTGGCACGTGTGTCAAGCAGCGGTTGAGACAGTTCTTCGCGGTGGCACGCTTAGGCCTTTATCGGAGCTGACACTTCTGGACGCACCTCTCACTGCCACTGATGAAGCTTCTGAGGCGGAAGACGGTGGCGCTGATGCTATTTGGAAGATTCGCGATCCGAATTTCGGGCTGGCGAGCTCACGATCTAGTAATAAGGTGTGTTCTGGAAGCAAACGGAGGAGATCGGAGGAGTTTGTGAAGGTTCCAGCGGCGATTAATCTTGATTTACGATTGACGCCAATTTTTCAACAGAAGGCAGTGGAGGAACGCCGGCCTGGTTCACCGTCGATGACGTCGGAGGAATCGGTGACGACGACGGCGTGTTTAGAAACTGGGATTGGAGATCGGTGGAGTCACGGTGGTGATCGGAAAGTTCTCAACCTTTTCATATGA

Protein sequence

>MsaT044566.1

MSCNGCRVLRKGCSESCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPLSELTLLDAPLTATDEASEAEDGGADAIWKIRDPNFGLASSRSSNKVCSGSKRRRSEEFVKVPAAINLDLRLTPIFQQKAVEERRPGSPSMTSEESVTTTACLETGIGDRWSHGGDRKVLNLFI*