Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044578 | XP_003608528.1 | 97.175 | 354 | 8 | 1 | 1 | 354 | 153 | 504 | 0.0 | 721 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044578 | sp|Q9SZF7|SHR_ARATH | 66.757 | 367 | 107 | 6 | 1 | 354 | 166 | 530 | 8.11e-172 | 491 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044578 | tr|G7JE24|G7JE24_MEDTR | 97.175 | 354 | 8 | 1 | 1 | 354 | 153 | 504 | 0.0 | 721 |
Gene ID | Type | Classification |
---|---|---|
MsaG044578 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044578 | MtrunA17_Chr5g0401131 | 75.482 | 363 | 75 | 5 | 1 | 354 | 134 | 491 | 0.0 | 558 |
MsaG044578 | MtrunA17_Chr2g0329591 | 56.131 | 367 | 140 | 8 | 1 | 354 | 94 | 452 | 1.33e-136 | 396 |
MsaG044578 | MtrunA17_Chr5g0445331 | 30.663 | 362 | 233 | 6 | 2 | 353 | 179 | 532 | 1.13e-56 | 192 |
MsaG044578 | MtrunA17_Chr2g0319091 | 32.571 | 350 | 215 | 6 | 12 | 353 | 243 | 579 | 7.75e-56 | 191 |
MsaG044578 | MtrunA17_Chr1g0159461 | 31.579 | 361 | 220 | 8 | 4 | 353 | 248 | 592 | 1.52e-55 | 191 |
MsaG044578 | MtrunA17_Chr5g0447691 | 29.444 | 360 | 236 | 6 | 2 | 353 | 195 | 544 | 5.85e-55 | 188 |
MsaG044578 | MtrunA17_Chr4g0054071 | 97.647 | 85 | 2 | 0 | 1 | 85 | 153 | 237 | 2.01e-54 | 179 |
MsaG044578 | MtrunA17_Chr3g0101141 | 30.707 | 368 | 221 | 10 | 2 | 353 | 193 | 542 | 4.60e-53 | 183 |
MsaG044578 | MtrunA17_Chr3g0125811 | 30.141 | 355 | 233 | 6 | 4 | 353 | 226 | 570 | 3.20e-51 | 179 |
MsaG044578 | MtrunA17_Chr2g0290241 | 29.494 | 356 | 236 | 6 | 3 | 353 | 80 | 425 | 6.65e-51 | 175 |
MsaG044578 | MtrunA17_Chr4g0076091 | 30.084 | 359 | 233 | 7 | 2 | 352 | 194 | 542 | 9.07e-50 | 174 |
MsaG044578 | MtrunA17_Chr7g0224271 | 30.481 | 374 | 219 | 10 | 1 | 353 | 320 | 673 | 1.07e-49 | 176 |
MsaG044578 | MtrunA17_Chr4g0053901 | 29.073 | 399 | 230 | 9 | 1 | 354 | 79 | 469 | 7.27e-48 | 168 |
MsaG044578 | MtrunA17_Chr5g0401421 | 28.358 | 402 | 231 | 9 | 1 | 354 | 55 | 447 | 1.02e-47 | 167 |
MsaG044578 | MtrunA17_Chr8g0376381 | 29.032 | 341 | 217 | 8 | 16 | 353 | 204 | 522 | 8.34e-44 | 158 |
MsaG044578 | MtrunA17_Chr4g0039661 | 30.141 | 355 | 228 | 8 | 4 | 353 | 216 | 555 | 9.60e-43 | 155 |
MsaG044578 | MtrunA17_Chr8g0344101 | 31.903 | 373 | 219 | 13 | 1 | 353 | 243 | 600 | 1.23e-42 | 156 |
MsaG044578 | MtrunA17_Chr4g0057291 | 27.397 | 365 | 235 | 8 | 4 | 354 | 315 | 663 | 1.56e-42 | 156 |
MsaG044578 | MtrunA17_Chr7g0245601 | 28.652 | 356 | 226 | 11 | 4 | 354 | 461 | 793 | 1.73e-40 | 151 |
MsaG044578 | MtrunA17_Chr3g0110971 | 26.989 | 352 | 225 | 6 | 16 | 353 | 254 | 587 | 2.69e-40 | 149 |
MsaG044578 | MtrunA17_Chr4g0038761 | 28.889 | 360 | 224 | 13 | 4 | 354 | 107 | 443 | 3.03e-39 | 144 |
MsaG044578 | MtrunA17_Chr2g0328391 | 30.508 | 354 | 230 | 8 | 8 | 354 | 326 | 670 | 5.38e-39 | 146 |
MsaG044578 | MtrunA17_Chr2g0306641 | 27.536 | 345 | 222 | 9 | 17 | 353 | 163 | 487 | 5.95e-39 | 144 |
MsaG044578 | MtrunA17_Chr4g0031741 | 29.330 | 358 | 233 | 10 | 4 | 354 | 307 | 651 | 8.35e-39 | 146 |
MsaG044578 | MtrunA17_Chr4g0031721 | 27.500 | 360 | 245 | 7 | 1 | 354 | 336 | 685 | 4.16e-38 | 144 |
MsaG044578 | MtrunA17_Chr8g0357601 | 29.132 | 357 | 231 | 12 | 7 | 353 | 208 | 552 | 5.89e-38 | 142 |
MsaG044578 | MtrunA17_Chr4g0031711 | 28.963 | 328 | 218 | 6 | 1 | 319 | 381 | 702 | 1.89e-36 | 139 |
MsaG044578 | MtrunA17_Chr2g0328341 | 26.870 | 361 | 243 | 10 | 3 | 354 | 291 | 639 | 3.06e-36 | 139 |
MsaG044578 | MtrunA17_Chr4g0031701 | 27.701 | 361 | 234 | 10 | 4 | 351 | 277 | 623 | 9.29e-36 | 137 |
MsaG044578 | MtrunA17_Chr7g0238891 | 24.791 | 359 | 256 | 5 | 1 | 354 | 392 | 741 | 3.46e-35 | 136 |
MsaG044578 | MtrunA17_Chr4g0057891 | 26.882 | 372 | 232 | 11 | 3 | 353 | 168 | 520 | 3.47e-35 | 134 |
MsaG044578 | MtrunA17_Chr3g0085681 | 24.444 | 405 | 235 | 10 | 4 | 353 | 48 | 436 | 6.03e-35 | 132 |
MsaG044578 | MtrunA17_Chr4g0031731 | 27.701 | 361 | 234 | 10 | 4 | 351 | 277 | 623 | 3.52e-34 | 132 |
MsaG044578 | MtrunA17_Chr2g0328381 | 25.668 | 374 | 231 | 11 | 3 | 354 | 294 | 642 | 5.13e-32 | 126 |
MsaG044578 | MtrunA17_Chr2g0328411 | 25.776 | 322 | 225 | 6 | 3 | 319 | 311 | 623 | 3.21e-31 | 124 |
MsaG044578 | MtrunA17_Chr4g0038851 | 25.604 | 414 | 223 | 11 | 7 | 353 | 74 | 469 | 1.37e-30 | 121 |
MsaG044578 | MtrunA17_Chr2g0328431 | 25.568 | 352 | 245 | 7 | 8 | 354 | 316 | 655 | 6.80e-30 | 120 |
MsaG044578 | MtrunA17_Chr1g0183641 | 27.528 | 356 | 226 | 12 | 4 | 352 | 146 | 476 | 1.24e-29 | 118 |
MsaG044578 | MtrunA17_Chr3g0114841 | 27.701 | 361 | 243 | 9 | 4 | 352 | 145 | 499 | 2.38e-29 | 118 |
MsaG044578 | MtrunA17_Chr2g0328401 | 25.868 | 317 | 221 | 6 | 8 | 319 | 317 | 624 | 9.85e-29 | 117 |
MsaG044578 | MtrunA17_Chr1g0200401 | 26.075 | 372 | 222 | 13 | 12 | 353 | 111 | 459 | 1.45e-26 | 109 |
MsaG044578 | MtrunA17_Chr2g0328361 | 24.722 | 360 | 227 | 11 | 3 | 354 | 293 | 616 | 1.72e-26 | 110 |
MsaG044578 | MtrunA17_Chr5g0424131 | 27.701 | 361 | 234 | 11 | 7 | 352 | 150 | 498 | 2.69e-26 | 109 |
MsaG044578 | MtrunA17_Chr3g0085361 | 23.343 | 347 | 198 | 7 | 61 | 353 | 18 | 350 | 3.71e-26 | 107 |
MsaG044578 | MtrunA17_Chr7g0236851 | 27.931 | 290 | 187 | 7 | 73 | 352 | 379 | 656 | 1.34e-25 | 108 |
MsaG044578 | MtrunA17_Chr5g0396491 | 31.122 | 196 | 111 | 4 | 4 | 191 | 79 | 258 | 1.68e-25 | 107 |
MsaG044578 | MtrunA17_Chr5g0396491 | 30.323 | 155 | 99 | 4 | 201 | 353 | 331 | 478 | 3.25e-13 | 70.5 |
MsaG044578 | MtrunA17_Chr1g0194621 | 25.000 | 360 | 249 | 9 | 3 | 353 | 171 | 518 | 1.66e-24 | 104 |
MsaG044578 | MtrunA17_Chr2g0294471 | 24.444 | 360 | 252 | 8 | 4 | 353 | 227 | 576 | 4.98e-24 | 103 |
MsaG044578 | MtrunA17_Chr2g0294461 | 23.398 | 359 | 260 | 6 | 4 | 353 | 233 | 585 | 6.08e-24 | 102 |
MsaG044578 | MtrunA17_Chr6g0468561 | 25.278 | 360 | 225 | 11 | 13 | 353 | 328 | 662 | 4.09e-23 | 100 |
MsaG044578 | MtrunA17_Chr8g0383981 | 26.724 | 348 | 218 | 12 | 17 | 354 | 177 | 497 | 4.96e-23 | 100 |
MsaG044578 | MtrunA17_Chr2g0328371 | 27.016 | 248 | 168 | 6 | 61 | 302 | 8 | 248 | 1.47e-22 | 95.1 |
MsaG044578 | MtrunA17_Chr2g0323111 | 29.348 | 184 | 118 | 4 | 176 | 354 | 131 | 307 | 1.16e-21 | 94.0 |
MsaG044578 | MtrunA17_Chr7g0270031 | 23.343 | 347 | 257 | 5 | 8 | 353 | 216 | 554 | 5.46e-21 | 94.0 |
MsaG044578 | MtrunA17_Chr4g0012071 | 22.689 | 357 | 245 | 13 | 4 | 353 | 219 | 551 | 6.29e-19 | 87.8 |
MsaG044578 | MtrunA17_Chr7g0230771 | 22.409 | 357 | 247 | 11 | 4 | 353 | 398 | 731 | 4.90e-16 | 79.3 |
MsaG044578 | MtrunA17_Chr7g0230731 | 22.129 | 357 | 248 | 11 | 4 | 353 | 395 | 728 | 1.41e-15 | 78.2 |
MsaG044578 | MtrunA17_Chr8g0373561 | 23.967 | 363 | 237 | 14 | 4 | 353 | 205 | 541 | 3.88e-13 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG044578 | AT4G37650.1 | 66.757 | 367 | 107 | 6 | 1 | 354 | 166 | 530 | 8.25e-173 | 491 |
MsaG044578 | AT2G04890.1 | 31.944 | 360 | 220 | 8 | 2 | 353 | 71 | 413 | 2.77e-60 | 199 |
MsaG044578 | AT1G50600.3 | 31.319 | 364 | 224 | 8 | 2 | 353 | 177 | 526 | 2.54e-56 | 192 |
MsaG044578 | AT1G50600.1 | 31.319 | 364 | 224 | 8 | 2 | 353 | 248 | 597 | 8.68e-56 | 192 |
MsaG044578 | AT1G50600.2 | 31.319 | 364 | 224 | 8 | 2 | 353 | 252 | 601 | 1.10e-55 | 192 |
MsaG044578 | AT3G49950.1 | 33.602 | 372 | 217 | 10 | 1 | 354 | 50 | 409 | 5.41e-54 | 183 |
MsaG044578 | AT5G48150.1 | 28.492 | 358 | 242 | 5 | 1 | 353 | 142 | 490 | 1.73e-52 | 181 |
MsaG044578 | AT5G48150.4 | 28.492 | 358 | 242 | 5 | 1 | 353 | 142 | 490 | 1.73e-52 | 181 |
MsaG044578 | AT5G48150.2 | 28.492 | 358 | 242 | 5 | 1 | 353 | 142 | 490 | 1.73e-52 | 181 |
MsaG044578 | AT5G48150.3 | 28.492 | 358 | 242 | 5 | 1 | 353 | 142 | 490 | 1.73e-52 | 181 |
MsaG044578 | AT1G21450.1 | 31.978 | 369 | 218 | 8 | 1 | 353 | 242 | 593 | 5.88e-51 | 179 |
MsaG044578 | AT1G66350.1 | 30.769 | 351 | 214 | 9 | 7 | 353 | 181 | 506 | 6.51e-48 | 169 |
MsaG044578 | AT3G03450.1 | 29.565 | 345 | 217 | 7 | 17 | 353 | 219 | 545 | 1.75e-47 | 169 |
MsaG044578 | AT5G17490.1 | 30.321 | 343 | 211 | 7 | 17 | 353 | 196 | 516 | 1.09e-45 | 163 |
MsaG044578 | AT4G17230.1 | 27.500 | 360 | 240 | 6 | 3 | 354 | 180 | 526 | 6.77e-43 | 156 |
MsaG044578 | AT4G17230.2 | 27.500 | 360 | 240 | 6 | 3 | 354 | 180 | 526 | 6.77e-43 | 156 |
MsaG044578 | AT1G14920.1 | 29.326 | 341 | 220 | 8 | 16 | 353 | 207 | 529 | 1.39e-42 | 155 |
MsaG044578 | AT2G01570.1 | 28.152 | 341 | 224 | 8 | 16 | 353 | 259 | 581 | 7.70e-41 | 151 |
MsaG044578 | AT3G54220.1 | 29.248 | 359 | 223 | 12 | 4 | 354 | 316 | 651 | 1.17e-40 | 151 |
MsaG044578 | AT5G66770.1 | 29.330 | 358 | 236 | 8 | 1 | 353 | 239 | 584 | 2.86e-39 | 147 |
MsaG044578 | AT2G29065.1 | 27.049 | 366 | 247 | 9 | 1 | 354 | 272 | 629 | 1.06e-37 | 143 |
MsaG044578 | AT1G50420.1 | 26.077 | 418 | 223 | 9 | 4 | 353 | 80 | 479 | 1.63e-37 | 140 |
MsaG044578 | AT1G07530.1 | 27.095 | 358 | 244 | 8 | 4 | 354 | 419 | 766 | 2.29e-37 | 143 |
MsaG044578 | AT2G29060.2 | 29.006 | 362 | 234 | 10 | 4 | 354 | 307 | 656 | 2.43e-37 | 142 |
MsaG044578 | AT2G29060.1 | 29.006 | 362 | 234 | 10 | 4 | 354 | 344 | 693 | 2.91e-37 | 142 |
MsaG044578 | AT2G37650.1 | 26.705 | 352 | 242 | 7 | 8 | 354 | 374 | 714 | 1.24e-36 | 140 |
MsaG044578 | AT2G37650.2 | 26.705 | 352 | 242 | 7 | 8 | 354 | 362 | 702 | 1.31e-36 | 140 |
MsaG044578 | AT3G13840.1 | 30.663 | 362 | 219 | 12 | 3 | 353 | 170 | 510 | 4.08e-36 | 137 |
MsaG044578 | AT1G63100.1 | 28.099 | 363 | 234 | 9 | 6 | 352 | 277 | 628 | 1.02e-35 | 137 |
MsaG044578 | AT1G63100.2 | 28.099 | 363 | 234 | 9 | 6 | 352 | 302 | 653 | 1.32e-35 | 137 |
MsaG044578 | AT3G46600.2 | 26.891 | 357 | 244 | 6 | 4 | 354 | 27 | 372 | 4.84e-35 | 132 |
MsaG044578 | AT3G50650.1 | 29.345 | 351 | 225 | 9 | 12 | 353 | 206 | 542 | 5.08e-34 | 132 |
MsaG044578 | AT3G46600.3 | 27.374 | 358 | 241 | 7 | 4 | 354 | 203 | 548 | 8.64e-34 | 131 |
MsaG044578 | AT3G46600.1 | 27.374 | 358 | 241 | 7 | 4 | 354 | 235 | 580 | 1.55e-33 | 130 |
MsaG044578 | AT1G07520.2 | 26.944 | 360 | 238 | 10 | 9 | 354 | 182 | 530 | 4.70e-33 | 129 |
MsaG044578 | AT1G07520.4 | 26.944 | 360 | 238 | 10 | 9 | 354 | 182 | 530 | 4.70e-33 | 129 |
MsaG044578 | AT1G55580.1 | 29.016 | 386 | 219 | 15 | 10 | 353 | 73 | 445 | 8.08e-33 | 127 |
MsaG044578 | AT1G07520.1 | 26.944 | 360 | 238 | 10 | 9 | 354 | 346 | 694 | 9.50e-33 | 129 |
MsaG044578 | AT1G07520.3 | 26.944 | 360 | 238 | 10 | 9 | 354 | 347 | 695 | 9.81e-33 | 129 |
MsaG044578 | AT5G41920.1 | 28.011 | 357 | 228 | 12 | 4 | 353 | 66 | 400 | 2.83e-32 | 125 |
MsaG044578 | AT5G59450.1 | 27.528 | 356 | 239 | 8 | 8 | 354 | 254 | 599 | 3.12e-32 | 127 |
MsaG044578 | AT5G52510.1 | 25.895 | 363 | 225 | 9 | 13 | 353 | 300 | 640 | 9.07e-31 | 123 |
MsaG044578 | AT4G08250.1 | 28.523 | 298 | 199 | 8 | 61 | 352 | 187 | 476 | 3.18e-27 | 112 |
MsaG044578 | AT3G60630.1 | 25.987 | 304 | 200 | 10 | 61 | 353 | 333 | 622 | 2.93e-16 | 80.5 |
MsaG044578 | AT4G00150.1 | 23.889 | 360 | 226 | 14 | 5 | 353 | 232 | 554 | 1.76e-14 | 75.1 |
MsaG044578 | AT2G45160.1 | 23.398 | 359 | 236 | 12 | 8 | 353 | 307 | 639 | 7.74e-12 | 67.0 |
MsaG044578 | AT4G36710.1 | 22.905 | 358 | 248 | 13 | 4 | 353 | 148 | 485 | 1.96e-11 | 65.5 |
MsaG044578 | AT5G67411.1 | 25.980 | 204 | 134 | 6 | 101 | 290 | 2 | 202 | 4.32e-11 | 62.0 |
Find 90 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATCAATTATGTGAAGTTT+AGG | 0.248165 | 8:-62258977 | None:intergenic |
AAACAAATCACGGTGGTTTC+CGG | 0.257711 | 8:-62259299 | None:intergenic |
AAGAGTGTTTAAGATGGTTT+AGG | 0.258495 | 8:+62259422 | MsaT044578.1:CDS |
TATCAATTATGTGAAGTTTA+GGG | 0.283325 | 8:-62258976 | None:intergenic |
AGGAGGAGGTTGCATGGTGG+TGG | 0.328666 | 8:+62259592 | MsaT044578.1:CDS |
TTGTCCATGGACTAACTTCT+TGG | 0.329314 | 8:-62258901 | None:intergenic |
ATGAAGTTTGTGATGATGTT+AGG | 0.340214 | 8:+62259638 | MsaT044578.1:CDS |
GCTGATTTAGAAGTTTGTTT+TGG | 0.347659 | 8:+62259376 | MsaT044578.1:CDS |
AGAGTGTTTAAGATGGTTTA+GGG | 0.373474 | 8:+62259423 | MsaT044578.1:CDS |
TGGAAGAGGTATTGTTGATT+TGG | 0.374691 | 8:+62259516 | MsaT044578.1:CDS |
ATCACGGTGGTTTCCGGCTC+CGG | 0.383080 | 8:-62259293 | None:intergenic |
AACTCTTTACATTCGATATC+CGG | 0.397888 | 8:+62259274 | MsaT044578.1:CDS |
GTTAGTCCATGGACAACGTT+TGG | 0.420735 | 8:+62258908 | MsaT044578.1:CDS |
CGGTGGTGTGGGCCAGTGTA+TGG | 0.430711 | 8:+62259752 | MsaT044578.1:CDS |
CTTCCACGACAAGAATATTC+CGG | 0.431546 | 8:-62259722 | None:intergenic |
GCATGGTGGTGGGTTTAATA+CGG | 0.431980 | 8:+62259603 | MsaT044578.1:CDS |
GGAGGAGGTTGCATGGTGGT+GGG | 0.435450 | 8:+62259593 | MsaT044578.1:CDS |
TATTAAAGAAGATGAAGCTT+TGG | 0.437246 | 8:+62259237 | MsaT044578.1:CDS |
TGTTTATATCTTTGCTTCGT+GGG | 0.441689 | 8:+62259317 | MsaT044578.1:CDS |
TTGTTTATATCTTTGCTTCG+TGG | 0.451946 | 8:+62259316 | MsaT044578.1:CDS |
CACCACAGTCAGCGGTGGCT+CGG | 0.457207 | 8:+62259093 | MsaT044578.1:CDS |
TGCTTCGTGGGTTAGAACCT+AGG | 0.461690 | 8:+62259329 | MsaT044578.1:CDS |
CGTCTCTCCATTGACTCATA+AGG | 0.462546 | 8:-62259550 | None:intergenic |
CAGCGTCACGGTGGAGGAGG+AGG | 0.463327 | 8:+62259578 | MsaT044578.1:CDS |
TTTGGTTCGGATTTCGTGGA+AGG | 0.470121 | 8:+62259394 | MsaT044578.1:CDS |
GCTATCTTAGAAGCATTAGA+AGG | 0.474912 | 8:+62258950 | MsaT044578.1:CDS |
ATGTTAGGGCTTTGTTGAGA+AGG | 0.482294 | 8:+62259653 | MsaT044578.1:CDS |
TGAAGTTTGTGATGATGTTA+GGG | 0.489537 | 8:+62259639 | MsaT044578.1:CDS |
TGGTGACAACAGTGGTTAAA+CGG | 0.490002 | 8:-62259075 | None:intergenic |
TCATGAAGGAAATCGGTTCA+AGG | 0.493998 | 8:+62259125 | MsaT044578.1:CDS |
GCAACACTTATTGCACTCAA+TGG | 0.496242 | 8:+62259002 | MsaT044578.1:CDS |
GCTTCGTGGGTTAGAACCTA+GGG | 0.504275 | 8:+62259330 | MsaT044578.1:CDS |
TTGATGCTAGAAAGAGAAGC+TGG | 0.507592 | 8:+62259496 | MsaT044578.1:CDS |
AGCGGGTGGCCAACGCTTCG+AGG | 0.508942 | 8:-62259033 | None:intergenic |
TGTTCCTCCGATGGTGATGC+CGG | 0.512206 | 8:+62259703 | MsaT044578.1:CDS |
TTTGATCTGTGTCACCGTAT+GGG | 0.514015 | 8:-62258745 | None:intergenic |
CGGTGGAGGAGGAGGTTGCA+TGG | 0.514673 | 8:+62259586 | MsaT044578.1:CDS |
GAAGGATAAGCCGGTGGTGT+GGG | 0.516813 | 8:+62259741 | MsaT044578.1:CDS |
GGAAGGATAAGCCGGTGGTG+TGG | 0.518070 | 8:+62259740 | MsaT044578.1:CDS |
CGGAATATTCTTGTCGTGGA+AGG | 0.518332 | 8:+62259723 | MsaT044578.1:CDS |
CTAGAAAGAGAAGCTGGAAG+AGG | 0.518793 | 8:+62259502 | MsaT044578.1:CDS |
AAACAGCGTCACGGTGGAGG+AGG | 0.519490 | 8:+62259575 | MsaT044578.1:CDS |
CATACACTGGCCCACACCAC+CGG | 0.526670 | 8:-62259751 | None:intergenic |
TTGATCTGTGTCACCGTATG+GGG | 0.527505 | 8:-62258744 | None:intergenic |
TTGTTGAGAAGGTATAAAGA+AGG | 0.530989 | 8:+62259664 | MsaT044578.1:CDS |
ACCTCAAGGCCTCCATACAC+TGG | 0.532917 | 8:-62259764 | None:intergenic |
TGCTTCTAAGATAGCACCGT+TGG | 0.532927 | 8:-62258942 | None:intergenic |
GCCAACACTCCTCGAAGCGT+TGG | 0.539050 | 8:+62259024 | MsaT044578.1:CDS |
TGTTGAGAAGGTATAAAGAA+GGG | 0.543842 | 8:+62259665 | MsaT044578.1:CDS |
TTTAGTCGCATGAACGACGC+GGG | 0.545808 | 8:+62258797 | MsaT044578.1:CDS |
TCAACAACAGTTAAAACCCT+AGG | 0.548008 | 8:-62259346 | None:intergenic |
CATCTTCCTCGTTGAATCGA+AGG | 0.549319 | 8:-62258867 | None:intergenic |
ACGTGTCCAAACGTTGTCCA+TGG | 0.550032 | 8:-62258914 | None:intergenic |
GAAGGAAATCGGTTCAAGGA+TGG | 0.552770 | 8:+62259129 | MsaT044578.1:CDS |
GCCAACGCTTCGAGGAGTGT+TGG | 0.553618 | 8:-62259025 | None:intergenic |
GTGAGGTGTATCATCGGAGC+GGG | 0.558860 | 8:-62259050 | None:intergenic |
TTGTGATCCTTATGAGTCAA+TGG | 0.560449 | 8:+62259543 | MsaT044578.1:CDS |
GCCAGTGTATGGAGGCCTTG+AGG | 0.566308 | 8:+62259763 | MsaT044578.1:CDS |
GTGAAACAGCGTCACGGTGG+AGG | 0.572256 | 8:+62259572 | MsaT044578.1:CDS |
GAATATTCCGGCATCACCAT+CGG | 0.580354 | 8:-62259710 | None:intergenic |
TTTCAAGAACAAGTAGTGAG+AGG | 0.582987 | 8:+62259473 | MsaT044578.1:CDS |
AGTTCCAAGAAGTTAGTCCA+TGG | 0.584447 | 8:+62258897 | MsaT044578.1:CDS |
TTACATTCGATATCCGGAGC+CGG | 0.585693 | 8:+62259280 | MsaT044578.1:CDS |
ATGGACAACGTTTGGACACG+TGG | 0.586613 | 8:+62258916 | MsaT044578.1:CDS |
ATGACACAGTGTTCCTCCGA+TGG | 0.587322 | 8:+62259694 | MsaT044578.1:CDS |
TTTGGACACGTGGCAGCCAA+CGG | 0.587329 | 8:+62258926 | MsaT044578.1:CDS |
CTTGTCGTGGAAGGATAAGC+CGG | 0.587868 | 8:+62259732 | MsaT044578.1:CDS |
AGGTGTATCATCGGAGCGGG+TGG | 0.588563 | 8:-62259047 | None:intergenic |
GTTTAGTCGCATGAACGACG+CGG | 0.592117 | 8:+62258796 | MsaT044578.1:CDS |
GCAAAGATATAAACAAATCA+CGG | 0.596997 | 8:-62259309 | None:intergenic |
TGGTGTGGGCCAGTGTATGG+AGG | 0.609272 | 8:+62259755 | MsaT044578.1:CDS |
ATGCCGGAATATTCTTGTCG+TGG | 0.614564 | 8:+62259719 | MsaT044578.1:CDS |
CACCGAGCCACCGCTGACTG+TGG | 0.614723 | 8:-62259095 | None:intergenic |
ACGGAGGTGAGGTGTATCAT+CGG | 0.615790 | 8:-62259056 | None:intergenic |
AACGAGCTTAGTTCCCCATA+CGG | 0.616114 | 8:+62258731 | MsaT044578.1:CDS |
TGAGAAGGTATAAAGAAGGG+TGG | 0.652792 | 8:+62259668 | MsaT044578.1:CDS |
GTTGTCACCACAGTCAGCGG+TGG | 0.658729 | 8:+62259088 | MsaT044578.1:CDS |
ACTGTTGTCACCACAGTCAG+CGG | 0.665090 | 8:+62259085 | MsaT044578.1:CDS |
CAAAACCTTAACATCCGCGT+CGG | 0.669594 | 8:+62258832 | MsaT044578.1:CDS |
ACAGTGGTTAAACGGAGGTG+AGG | 0.672246 | 8:-62259067 | None:intergenic |
GTCGTGGAAGGATAAGCCGG+TGG | 0.674105 | 8:+62259735 | MsaT044578.1:CDS |
TATTCCGGCATCACCATCGG+AGG | 0.676733 | 8:-62259707 | None:intergenic |
CATGTTCCTTCGATTCAACG+AGG | 0.690083 | 8:+62258861 | MsaT044578.1:CDS |
TGGAGGAGGAGGTTGCATGG+TGG | 0.690855 | 8:+62259589 | MsaT044578.1:CDS |
GGTGAGGTGTATCATCGGAG+CGG | 0.693802 | 8:-62259051 | None:intergenic |
AGAGACGTGAAACAGCGTCA+CGG | 0.722636 | 8:+62259566 | MsaT044578.1:CDS |
GACGTGAAACAGCGTCACGG+TGG | 0.727045 | 8:+62259569 | MsaT044578.1:CDS |
AAGATATAAACAAATCACGG+TGG | 0.755243 | 8:-62259306 | None:intergenic |
TGACAACAGTGGTTAAACGG+AGG | 0.764952 | 8:-62259072 | None:intergenic |
GCTGACTGTGGTGACAACAG+TGG | 0.773045 | 8:-62259083 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 62258719 | 62259783 | 62258719 | ID=MsaG044578 |
Chr8 | mRNA | 62258719 | 62259783 | 62258719 | ID=MsaT044578.1;Parent=MsaG044578 |
Chr8 | exon | 62258719 | 62259783 | 62258719 | ID=MsaT044578.1.exon1;Parent=MsaT044578.1 |
Chr8 | CDS | 62258719 | 62259783 | 62258719 | ID=cds.MsaT044578.1;Parent=MsaT044578.1 |
Gene Sequence |
Protein sequence |