AlfalfaGEDB | MsaG044636

M. sativa ssp. caerulea / MsaG044636

KEGG: K04733
GO: GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0043621 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044636	XP_003608587.1	97.406	694	16	1	2	693	4	697	0.0	1358
MsaG044636	XP_003608587.1	97.959	147	3	0	691	837	859	1005	1.26e-80	291

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044636	sp\|O49545\|BAME1_ARATH	76.720	683	152	4	21	696	23	705	0.0	1035
MsaG044636	sp\|O49545\|BAME1_ARATH	77.372	137	28	1	691	827	864	997	2.80e-56	213

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044636	tr\|G7JGD1\|G7JGD1_MEDTR	97.406	694	16	1	2	693	4	697	0.0	1358
MsaG044636	tr\|G7JGD1\|G7JGD1_MEDTR	97.959	147	3	0	691	837	859	1005	6.02e-81	291

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044636	MtrunA17_Chr4g0054521	97.406	694	16	1	2	693	4	697	0.0	1358
MsaG044636	MtrunA17_Chr4g0054521	97.959	147	3	0	691	837	859	1005	1.16e-84	291
MsaG044636	MtrunA17_Chr5g0400681	78.550	676	142	2	21	693	25	700	0.0	1076
MsaG044636	MtrunA17_Chr5g0400681	83.217	143	19	1	691	833	862	999	2.25e-64	233
MsaG044636	MtrunA17_Chr2g0277081	51.176	680	313	10	23	693	27	696	0.0	643
MsaG044636	MtrunA17_Chr2g0277081	66.355	107	36	0	691	797	857	963	1.03e-41	165
MsaG044636	MtrunA17_Chr5g0442151	50.453	662	295	7	42	693	51	689	0.0	629
MsaG044636	MtrunA17_Chr5g0442151	68.182	110	33	2	691	798	853	962	8.98e-40	159
MsaG044636	MtrunA17_Chr3g0095081	47.507	682	342	7	27	693	52	732	0.0	627
MsaG044636	MtrunA17_Chr3g0095081	67.619	105	33	1	691	794	897	1001	2.01e-39	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044636	AT5G65700.1	76.720	683	152	4	21	696	23	705	0.0	1035
MsaG044636	AT5G65700.1	77.372	137	28	1	691	827	864	997	2.85e-57	213
MsaG044636	AT5G65700.2	76.720	683	152	4	21	696	23	705	0.0	1035
MsaG044636	AT5G65700.2	77.372	137	28	1	691	827	864	997	2.85e-57	213
MsaG044636	AT3G49670.1	73.638	679	168	7	21	693	25	698	0.0	984
MsaG044636	AT3G49670.1	72.000	150	30	3	691	836	860	1001	1.07e-54	205
MsaG044636	AT1G75820.1	48.454	679	339	8	22	693	26	700	0.0	598
MsaG044636	AT1G75820.1	66.071	112	33	1	691	797	861	972	1.42e-38	155
MsaG044636	AT4G20270.1	47.246	690	344	11	21	693	32	718	0.0	595
MsaG044636	AT4G20270.1	63.303	109	39	1	691	798	881	989	9.46e-40	159

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Find 232 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCGCCGGAACTTCAC+CGG	0.552220	8:+62940802	None:intergenic
AAAAGCGACGTCTATAGCTT+CGG	0.538303	8:-62938462	MsaT044636.1:CDS
AAAGTATTTGGTTGAATGAA+AGG	0.483876	8:+62941647	None:intergenic
AAATAAGGTCCACAAAGTTC+AGG	0.441132	8:+62939876	None:intergenic
AACACTTGTGAAATTCCCAA+TGG	0.572944	8:+62940280	None:intergenic
AACCAATGTAAAGCTCTTTA+AGG	0.136530	8:+62941056	None:intergenic
AACTTGAAGATTGAAGAGGT+TGG	0.570083	8:+62941285	None:intergenic
AAGAGGTTGGAGAGTTCAGT+AGG	0.418804	8:+62941298	None:intergenic
AAGATGCAAATGACGGAGAA+AGG	0.508581	8:+62941204	None:intergenic
AAGCTTACAACGACTTATCT+CGG	0.473857	8:+62940139	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	62938080	62941695	62938080	ID=MsaG044636
Chr8	mRNA	62938080	62941695	62938080	ID=MsaT044636.1;Parent=MsaG044636
Chr8	exon	62938080	62938513	62938080	ID=MsaT044636.1.exon2;Parent=MsaT044636.1
Chr8	CDS	62938080	62938513	62938080	ID=cds.MsaT044636.1;Parent=MsaT044636.1
Chr8	exon	62939616	62941695	62939616	ID=MsaT044636.1.exon1;Parent=MsaT044636.1
Chr8	CDS	62939616	62941695	62939616	ID=cds.MsaT044636.1;Parent=MsaT044636.1

Gene Sequence

>MsaT044636.1

ATGCTTCTACCACTCCTCCTCTTCCTCCTTTCATTCAACCAAATACTTTCCACACCCCACATCTCAGAATACCACTCCCTCCTCACCTTCAAATCCTCCATTACAAATGACCCACAAAACATCCTCACCTCATGGAACCCAAAAACCCCTTACTGTTCCTGGTACGGTGTCAAATGTTCCCAACACCGCCACGTCATTTCTCTCAACCTCACCTCCCTCTCCCTCACCGGCACCCTCTCCCTCTCCAACCTCCCTTTCCTCACCAATCTCTCCCTCGCCGACAACAAATTCTCCGGCCCAATACCCTCTTCTCTCTCATCTCTCTCCTCTCTCCGCTTTCTCAACCTCTCCAACAACATCTTCAATGGCACCCTCCCTACTGAACTCTCCAACCTCTTCAATCTTCAAGTTCTTGACCTCTACAACAACAACCTGACCGGTTCACTACCAGTCTCCGTCACCCATTTATCCTTTCTCCGTCATTTGCATCTTGGTGGTAACTTTTTCACCGGAAAGATACCACCGGAGTATGGCTCTTGGACTCATTTAGAATATCTTGCTGTTTCTGGTAATGAACTTTCCGGTCACATTCCACCGGAGATTGGTAACATTACTTCCCTTAAAGAGCTTTACATTGGTTACTACAACACCTACGACGGTGGTATTCCACCGGAGATAGGTAATTTATCGGAGATGGTGAGATTTGATGCTGCTTACTGTGGTTTAACCGGTGAAGTTCCACCGGAGTTGGGTAAGCTTCAGAAGTTGGATACTTTGTTTCTTCAAGTAAACGCACTTTCTGGGTCGCTTACACCGGAGTTAGGGAACTTGAAAAGCTTGAAATCGATGGATTTATCGAATAATGCTTTCACCGGTGAAGTTCCGGCGAGTTTTGCTGAGTTGAAGAATCTGACACTTTTGAATTTGTTCAGAAATAAGCTTCATGGTGCTATACCGGAGTTTATCGGGGAAATGCCGTCGCTTGAAGTGTTGCAGATTTGGGAGAATAACTTCACTGGAAGTATTCCTCAGAGTTTGGGGAAAAATGGAAAACTCACCCTTGTTGATGTTTCTTCAAACAAGTTAACAGGTTCTCTTCCACCTTATATGTGTTTTGGTAACAAGCTTCAAACTTTGATAGCTTTAGGGAATTTTCTTTTTGGTCCTATTCCAGATTCACTTGGAAAGTGTAAATCTTTGAGTAGAATAAGAATGGGTGAGAATTTTCTTAATGGGTCAATTCCAAAAGGACTTTTTGGTCTTCCTGAATTGACACAAGTTGAGCTTCAAGATAATCTTTTATCTGGAAACTTTCCTCAACCTCTTTCAATGTCTCCAAATCTTGGTCAAGTTACTCTTTCCAACAATAAGCTTTCTGGGCCATTACCACCTTCCATTGGGAATTTCACAAGTGTTCAAAAGCTTATACTTGATGGGAACCAGTTTTCAGGTAAAATCCCTGCTGAGATTGGAAAGTTACATCAGCTTTCTAAGATAGATTTTAGTCATAACAAATTCTCTGGTCCTATTGCGCCCGAGATAAGTCGTTGTAAGCTTTTAACTTTCGTTGATCTTAGTCGTAACGAGCTTTCTGGTGAGATTCCTAAAGAAATGACTAAGATGAAGATATTGAATTACTTAAACCTTTCAAGGAACCATCTTGTTGGTACTATTCCAGGTTCTATTGCTTCAATGCAAAGCTTAACTTCTGTTGATTTTTCATATAATAATTTAACTGGTTTGGTTCCTGGTACTGGCCAATTTAGTTACTTTAACTACACTTCTTTCCTTGGTAACCCTGAACTTTGTGGACCTTATTTGGGTCCTTGCAAAGACGGTGTTGCCGATGGACCTCGTCAACCTCACGTTAAAGGACCACTCTCTTCTACTGTGAAGCTTTTGCTTGTTGTCGGGTTGCTTGTTTGCTCCGCTGTATTTGCTGTTGTAACGATATTCAAAGCTAGGTCTTTGAAAAAGGCGAGTGAAGCTCGTGCATGGAAATTAACCGCATTCCAACGTTTGGACTTCACGGTTGATGATGTTCTCGATTCCTTGAAAGAGGATAACATCATAGGAAAAGAGTATGCATACACATTGAAAGTCGACGAGAAAAGCGACGTCTATAGCTTCGGTGTGGTACTTCTAGAGCTTGTAGCAGGAAGAAAACCAGTAGGAGAATTTGGTGACGGGGTAGACATTGTGCAATGGGTGAGAAAAATGACAGATTCAAACAAAGAAGGTGTTCTAAAAGTTCTTGATCCTAGACTTCCTTCAGTTCCACTTCATGAGGTGATGCATGTGTTCTATGTAGCCATGTTATGTGTCGAAGAACAAGCTGTAGAAAGACCAACTATGCGCGAAGTTGTTCAAATGCTCACTGAGCTTCCAAAACCACCTAGCTCAAAACATGTTGAAGAAGACTTAACAACATTAACAATCAATGAATCCTCTTTGTCTTCATCAAACAGTTTAGAGTCTCCATCTAAAGATCCTAAAGATCTTCTTAGCATATGA

Protein sequence

>MsaT044636.1

MLLPLLLFLLSFNQILSTPHISEYHSLLTFKSSITNDPQNILTSWNPKTPYCSWYGVKCSQHRHVISLNLTSLSLTGTLSLSNLPFLTNLSLADNKFSGPIPSSLSSLSSLRFLNLSNNIFNGTLPTELSNLFNLQVLDLYNNNLTGSLPVSVTHLSFLRHLHLGGNFFTGKIPPEYGSWTHLEYLAVSGNELSGHIPPEIGNITSLKELYIGYYNTYDGGIPPEIGNLSEMVRFDAAYCGLTGEVPPELGKLQKLDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNAFTGEVPASFAELKNLTLLNLFRNKLHGAIPEFIGEMPSLEVLQIWENNFTGSIPQSLGKNGKLTLVDVSSNKLTGSLPPYMCFGNKLQTLIALGNFLFGPIPDSLGKCKSLSRIRMGENFLNGSIPKGLFGLPELTQVELQDNLLSGNFPQPLSMSPNLGQVTLSNNKLSGPLPPSIGNFTSVQKLILDGNQFSGKIPAEIGKLHQLSKIDFSHNKFSGPIAPEISRCKLLTFVDLSRNELSGEIPKEMTKMKILNYLNLSRNHLVGTIPGSIASMQSLTSVDFSYNNLTGLVPGTGQFSYFNYTSFLGNPELCGPYLGPCKDGVADGPRQPHVKGPLSSTVKLLLVVGLLVCSAVFAVVTIFKARSLKKASEARAWKLTAFQRLDFTVDDVLDSLKEDNIIGKEYAYTLKVDEKSDVYSFGVVLLELVAGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQMLTELPKPPSSKHVEEDLTTLTINESSLSSSNSLESPSKDPKDLLSI*