AlfalfaGEDB | MsaG044640

M. sativa ssp. caerulea / MsaG044640

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044640	XP_003608592.1	44.751	181	81	4	121	297	155	320	2.15e-34	144
MsaG044640	XP_003608592.1	88.854	323	29	3	301	623	13	328	0.0	583

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044640	sp\|Q9T072\|BH025_ARATH	39.873	316	158	10	4	301	23	324	4.97e-50	179
MsaG044640	sp\|Q9T072\|BH025_ARATH	46.798	203	99	5	428	623	128	328	1.93e-46	170

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044640	tr\|G7JGD6\|G7JGD6_MEDTR	44.751	181	81	4	121	297	155	320	1.03e-34	144
MsaG044640	tr\|G7JGD6\|G7JGD6_MEDTR	88.854	323	29	3	301	623	13	328	0.0	583

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TFs/TRs:

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Gene ID	Type	Classification
MsaG044640	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044640	MtrunA17_Chr4g0054561	88.854	323	29	3	301	623	13	328	0.0	583
MsaG044640	MtrunA17_Chr4g0054561	44.751	181	81	4	121	297	155	320	1.98e-38	144
MsaG044640	MtrunA17_Chr4g0054551	86.687	323	36	3	301	623	13	328	0.0	570
MsaG044640	MtrunA17_Chr4g0054551	41.989	181	86	4	121	297	155	320	4.62e-34	132
MsaG044640	MtrunA17_Chr4g0054571	92.466	292	19	2	11	301	39	328	4.37e-178	508
MsaG044640	MtrunA17_Chr4g0054571	47.059	187	78	6	450	621	150	330	2.26e-35	136
MsaG044640	MtrunA17_Chr5g0400671	45.190	343	131	13	301	619	13	322	2.21e-72	236
MsaG044640	MtrunA17_Chr5g0400671	30.721	319	176	5	6	301	26	322	1.98e-31	125
MsaG044640	MtrunA17_Chr5g0400661	44.985	329	132	10	11	301	16	333	5.40e-67	222
MsaG044640	MtrunA17_Chr5g0400661	36.624	314	154	10	331	619	40	333	2.47e-45	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044640	AT4G37850.2	39.873	316	158	10	4	301	23	324	5.05e-51	179
MsaG044640	AT4G37850.2	46.798	203	99	5	428	623	128	328	1.96e-47	170
MsaG044640	AT4G37850.1	39.873	316	158	10	4	301	23	324	5.05e-51	179
MsaG044640	AT4G37850.1	46.798	203	99	5	428	623	128	328	1.96e-47	170
MsaG044640	AT2G22760.1	50.000	180	82	5	443	615	112	290	1.67e-48	171
MsaG044640	AT2G22760.1	40.796	201	104	5	109	301	101	294	5.44e-37	140
MsaG044640	AT2G22760.2	50.000	164	75	4	443	600	112	274	2.04e-43	157
MsaG044640	AT2G22760.2	40.884	181	93	4	109	282	101	274	1.19e-32	127
MsaG044640	AT2G22770.1	43.439	221	103	5	420	619	99	318	1.15e-39	148
MsaG044640	AT2G22770.1	38.021	192	113	2	117	302	128	319	5.01e-34	132

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Find 108 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGAAGCAAGAGTTTC+TGG	0.260282	8:-62990327	MsaT044640.1:CDS
AAACTGTACCTGGGCAATGA+TGG	0.489078	8:+62995992	None:intergenic
AAAGTATGTGAAGGAGCTTA+AGG	0.470002	8:-62996342	MsaT044640.1:CDS
AAAGTTGTGAACTCAAAGAA+TGG	0.494937	8:-62997042	MsaT044640.1:CDS
AAGAAGCTTAAAACCGAGAT+CGG	0.489570	8:-62990903	MsaT044640.1:CDS
AAGGTTGGTACAACCTTCAT+TGG	0.432513	8:+62997078	None:intergenic
AAGTTAAAGCTAGTTTGTCG+GGG	0.643559	8:-62996151	MsaT044640.1:CDS
AATAGAGAAACTTCATCTCT+TGG	0.413889	8:-62996063	MsaT044640.1:CDS
AATTCATATGAATAGCATAA+AGG	0.468791	8:-62999137	MsaT044640.1:intron
AATTTCTTCACAACCGTAAC+CGG	0.405974	8:+62996272	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	62989994	62999167	62989994	ID=MsaG044640
Chr8	mRNA	62989994	62999167	62989994	ID=MsaT044640.1;Parent=MsaG044640
Chr8	exon	62989994	62990068	62989994	ID=MsaT044640.1.exon7;Parent=MsaT044640.1
Chr8	CDS	62989994	62990068	62989994	ID=cds.MsaT044640.1;Parent=MsaT044640.1
Chr8	exon	62990173	62990535	62990173	ID=MsaT044640.1.exon6;Parent=MsaT044640.1
Chr8	CDS	62990173	62990535	62990173	ID=cds.MsaT044640.1;Parent=MsaT044640.1
Chr8	exon	62990713	62991243	62990713	ID=MsaT044640.1.exon5;Parent=MsaT044640.1
Chr8	CDS	62990713	62991243	62990713	ID=cds.MsaT044640.1;Parent=MsaT044640.1
Chr8	exon	62995088	62995147	62995088	ID=MsaT044640.1.exon4;Parent=MsaT044640.1
Chr8	CDS	62995088	62995147	62995088	ID=cds.MsaT044640.1;Parent=MsaT044640.1
Chr8	exon	62996001	62996396	62996001	ID=MsaT044640.1.exon3;Parent=MsaT044640.1
Chr8	CDS	62996001	62996396	62996001	ID=cds.MsaT044640.1;Parent=MsaT044640.1
Chr8	exon	62996879	62997295	62996879	ID=MsaT044640.1.exon2;Parent=MsaT044640.1
Chr8	CDS	62996879	62997295	62996879	ID=cds.MsaT044640.1;Parent=MsaT044640.1
Chr8	exon	62999138	62999167	62999138	ID=MsaT044640.1.exon1;Parent=MsaT044640.1
Chr8	CDS	62999138	62999167	62999138	ID=cds.MsaT044640.1;Parent=MsaT044640.1

Gene Sequence

>MsaT044640.1

ATGTCTATAATTCATATGAATAGCATAAAGGAACCAAATGATTACAGTTTCATCAACCAATCAAGCATAAACGCGGAAATTGTTGGTAGTTTAGAGAGTAACTTAGAAAGGCCTTCAAAATCACTCAAAACTACTACTACTTGCAGTTCAAGCTATGTCAAAACAGAACATCTCTCACAAAAAACAGCTCCATTTGTTCTTTCGTTTGAAAACGAGAATCCACCACCAATGAAGGTTGTACCAACCTTGAGGTCAAAAACCAAAGTTGTGAACTCAAAGAATGGACCAAGACGTGTAAAGAATCAGGAGAGCAACAAGAAGAACGGTTCATTTTCCAAATCTACAACTCATCACACACCAGATCATATAATTGCTGAGAGAATAAGGAGAGAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCCCTTATTCCAAACCTCAAAAAGATGGACAAGGCCTCGGTGTTGGGTGATGCTATAAAGTATGTGAAGGAGCTTAAGGAACAAGTAAAACTGTTGGAGGAGCAAAGCAAAAGCAAAAGTGTAGAACCGGTTACGGTTGTGAAGAAATTGTCTGAACTGTCTGCGGATGTCAATGTTTCGGACACTTCCTCAAATTCATGTAATGGAAACTCTGATGAAACATCAAAAACAAATCTGTCACTACCTGAAGTTAAAGCTAGTTTGTCGGGGAAGAATGTGCTGATTAGGATCCTCTGTGAGAAAGATAAGGCAGTGATGGTGAATGTATATAGAGAAATAGAGAAACTTCATCTCTTGGTTATCAATGCTAGTTCGTTTTCATTTGGTTCCTCTGCTCTGGCCATAACCATCATTGCCCAGATGGAGAATGAATTGAACATGAGCATCCAGAAACTGGCAAAAAAACTGAGAGTTGGACTGGGATTAATGGAGGACACTACTTTGTTTAATGATTATGAGTACCCTATGGATTCATCTGCATTTCAGTTTGATGATATGGCATACTTCAAGTCTTTCTCAGCATCCCCACAAGAGAGTACTTATTCCTCTCATACCAACAACATCAACAACAAGCGAATCCATTCTGAAAGCCCACAGAACAGTTCTTTCCCCATTGAAAGTAGTCCAGATCAATCTGTTGTCTCAGCAACACCGCCAACTAAAGTACTCAAGGCTTCTCCCAAAATCATTTCATTTGATAATTCTTCTCAACAATTTTACAACATGGATGCAAAGGTTAAGAAGCTTAAAACCGAGATCGGGTACGGAGAAAACTTGAATTTTGGAAGTGTGATATCTCAAGGTGATTATTATAAACGAGAGAACAAGGTTGCTGCTGTAAATAGAAACCCTATTCAGGCTCAAGATCATGTTATGGCCGAAAGAAGACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCTCTTTCCTCCATTCTTCCTGGACTGAAAAAGATGGACAAGGCAACTATTTTGGAAGATGCTATTAAACATATGAAGCAACTAAAGGAACGAGTGAAGACATTAGAGGAACAAGTAGCCGACAAAAAGGTCGAATCAGCAGTCTTTGTGAAGAGATCTATTCTCTTCGACGATGATGGCAGCTCTTCTTGCGACGACAACTCAGACAAATCACTCCCAAAAATCGAAGCAAGAGTTTCTGGAAAAGACATGCTCATCAGAATCCACGGTGATAAACATTGCGGCCGATCTGCGGCCGCAATACTCAACTTATTGGAAAAGCATCATCTCACTGTTCAAAGTAGTTCTATTTTACCATTTGGAAATAACTATCTTGATATAACCATTGTTGCTCAGATGAATAAGGAATATTGCTTAACAATAAAGGATCTCGTAAGAAGCATAAGTCAGGTTTTGAGGCAGCATATTTGA

Protein sequence

>MsaT044640.1

MSIIHMNSIKEPNDYSFINQSSINAEIVGSLESNLERPSKSLKTTTTCSSSYVKTEHLSQKTAPFVLSFENENPPPMKVVPTLRSKTKVVNSKNGPRRVKNQESNKKNGSFSKSTTHHTPDHIIAERIRREKISQQFIALSALIPNLKKMDKASVLGDAIKYVKELKEQVKLLEEQSKSKSVEPVTVVKKLSELSADVNVSDTSSNSCNGNSDETSKTNLSLPEVKASLSGKNVLIRILCEKDKAVMVNVYREIEKLHLLVINASSFSFGSSALAITIIAQMENELNMSIQKLAKKLRVGLGLMEDTTLFNDYEYPMDSSAFQFDDMAYFKSFSASPQESTYSSHTNNINNKRIHSESPQNSSFPIESSPDQSVVSATPPTKVLKASPKIISFDNSSQQFYNMDAKVKKLKTEIGYGENLNFGSVISQGDYYKRENKVAAVNRNPIQAQDHVMAERRRREKLSQRFIALSSILPGLKKMDKATILEDAIKHMKQLKERVKTLEEQVADKKVESAVFVKRSILFDDDGSSSCDDNSDKSLPKIEARVSGKDMLIRIHGDKHCGRSAAAILNLLEKHHLTVQSSSILPFGNNYLDITIVAQMNKEYCLTIKDLVRSISQVLRQHI*