AlfalfaGEDB | MsaG044701

M. sativa ssp. caerulea / MsaG044701

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044701	XP_003629577.1	78.261	69	15	0	1	69	1	69	1.09e-29	116

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044701	sp\|Q8LQH4\|LBD6_ORYSJ	50.000	60	30	0	9	68	39	98	7.11e-15	70.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044701	tr\|G7LGC9\|G7LGC9_MEDTR	78.261	69	15	0	1	69	1	69	5.23e-30	116

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TFs/TRs:

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Gene ID	Type	Classification
MsaG044701	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044701	MtrunA17_Chr8g0374601	78.261	69	15	0	1	69	19	87	1.92e-33	116
MsaG044701	MtrunA17_Chr8g0374591	65.217	69	24	0	1	69	1	69	4.74e-26	93.2
MsaG044701	MtrunA17_Chr8g0374581	54.054	74	33	1	1	73	1	74	3.87e-20	80.5
MsaG044701	MtrunA17_Chr3g0097221	54.098	61	28	0	9	69	8	68	2.17e-17	73.9
MsaG044701	MtrunA17_Chr5g0402611	44.928	69	38	0	1	69	1	69	5.68e-16	70.5
MsaG044701	MtrunA17_Chr3g0115431	47.692	65	34	0	9	73	10	74	2.24e-15	67.8
MsaG044701	MtrunA17_Chr5g0437571	49.180	61	31	0	9	69	7	67	1.03e-13	62.4
MsaG044701	MtrunA17_Chr4g0055441	44.444	63	34	1	8	69	2	64	1.34e-13	62.0
MsaG044701	MtrunA17_Chr5g0444351	39.326	89	39	1	5	78	2	90	1.46e-13	61.6
MsaG044701	MtrunA17_Chr8g0353981	45.902	61	33	0	9	69	8	68	2.15e-13	62.8

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044701	AT3G26660.1	46.774	62	33	7	68	4	65	1.76e-15	66.2
MsaG044701	AT3G26620.1	46.774	62	33	7	68	4	65	2.29e-15	65.9
MsaG044701	AT1G65620.1	49.180	61	31	9	69	10	70	1.34e-14	65.9
MsaG044701	AT1G65620.4	49.180	61	31	9	69	10	70	1.34e-14	65.9
MsaG044701	AT1G65620.3	49.180	61	31	9	69	10	70	1.34e-14	65.9
MsaG044701	AT1G65620.5	49.180	61	31	9	69	10	70	1.34e-14	65.9
MsaG044701	AT1G65620.2	49.180	61	31	9	69	10	70	1.34e-14	65.9
MsaG044701	AT2G30130.1	49.180	61	31	9	69	9	69	7.49e-14	63.5
MsaG044701	AT2G23660.2	50.000	60	30	9	68	6	65	9.34e-14	64.7
MsaG044701	AT2G23660.3	50.000	60	30	9	68	6	65	9.34e-14	64.7

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Find 16 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTGCAGGTTGTTGGG+TGG	0.580347	8:-63674818	None:intergenic
AACTTGAGTCACACTCCCGA+CGG	0.656492	8:-63674775	None:intergenic
ACATGTTATTCTTCAGCAAC+AGG	0.412870	8:-63676629	None:intergenic
AGCGTGCAAGCATCTCCGTC+GGG	0.559116	8:+63674760	MsaT044701.1:CDS
AGGTTGTTGGGTGGAATGTT+AGG	0.398338	8:-63674809	None:intergenic
ATCAAGGTACACTCTGTGTT+TGG	0.360225	8:+63674842	MsaT044701.1:CDS
ATGAAATGTTGCAGGTTGTT+GGG	0.430961	8:-63674821	None:intergenic
CAACCTGCAACATTTCATCA+AGG	0.635459	8:+63674826	MsaT044701.1:CDS
CAGCGTGCAAGCATCTCCGT+CGG	0.548053	8:+63674759	MsaT044701.1:CDS
CGACGGAGATGCTTGCACGC+TGG	0.511634	8:-63674758	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	63674731	63676646	63674731	ID=MsaG044701
Chr8	mRNA	63674731	63676646	63674731	ID=MsaT044701.1;Parent=MsaG044701
Chr8	exon	63674731	63674936	63674731	ID=MsaT044701.1.exon1;Parent=MsaT044701.1
Chr8	CDS	63674731	63674936	63674731	ID=cds.MsaT044701.1;Parent=MsaT044701.1
Chr8	exon	63675905	63675917	63675905	ID=MsaT044701.1.exon2;Parent=MsaT044701.1
Chr8	CDS	63675905	63675917	63675905	ID=cds.MsaT044701.1;Parent=MsaT044701.1
Chr8	exon	63676605	63676646	63676605	ID=MsaT044701.1.exon3;Parent=MsaT044701.1
Chr8	CDS	63676605	63676646	63676605	ID=cds.MsaT044701.1;Parent=MsaT044701.1

Gene Sequence	>MsaT044701.1 ATGGCAAGTGCGATAATTCGTCTGTGCCCAGCGTGCAAGCATCTCCGTCGGGAGTGTGACTCAAGTTGTGACCTTGCTCCTAACATTCCACCCAACAACCTGCAACATTTCATCAAGGTACACTCTGTGTTTGGAAAGAACAATGTGTCGAAGATGTTGAAAAAACTTGATGTTTCACATCATGAACAAGCTATTGAATCCTTGGTTGGTAGCAATGAGAAGATGTATCAGCAAACATTGTTGCCTGTTGCTGAAGAATAA
Protein sequence	>MsaT044701.1 MASAIIRLCPACKHLRRECDSSCDLAPNIPPNNLQHFIKVHSVFGKNNVSKMLKKLDVSHHEQAIESLVGSNEKMYQQTLLPVAEE*