AlfalfaGEDB | MsaG044730

M. sativa ssp. caerulea / MsaG044730

KEGG: K14498
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044730	XP_013457576.1	98.813	337	4	0	1	337	1	337	0.0	687

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044730	sp\|P0C5D6\|SAPK3_ORYSJ	76.488	336	76	2	1	336	1	333	0.0	544

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044730	tr\|A0A072UPI3\|A0A072UPI3_MEDTR	98.813	337	4	0	1	337	1	337	0.0	687

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044730	MtrunA17_Chr4g0055451	98.813	337	4	0	1	337	1	337	0.0	687
MsaG044730	MtrunA17_Chr4g0055431	82.012	328	50	3	1	322	1	325	0.0	541
MsaG044730	MtrunA17_Chr5g0399911	72.443	352	77	4	2	337	3	350	0.0	519
MsaG044730	MtrunA17_Chr4g0045371	72.810	331	87	1	3	333	21	348	0.0	519
MsaG044730	MtrunA17_Chr8g0381821	76.415	318	71	2	3	320	2	315	0.0	514
MsaG044730	MtrunA17_Chr2g0277501	73.538	325	80	2	3	326	2	321	0.0	508
MsaG044730	MtrunA17_Chr1g0162301	70.674	341	88	2	3	333	22	360	0.0	508
MsaG044730	MtrunA17_Chr8g0385281	73.502	317	83	1	1	316	1	317	3.67e-179	499
MsaG044730	MtrunA17_Chr5g0426521	68.657	335	97	3	3	337	2	328	4.53e-178	496
MsaG044730	MtrunA17_Chr3g0123791	74.920	311	75	1	1	308	1	311	1.13e-177	496

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044730	AT4G33950.1	73.065	323	84	1	3	325	19	338	0.0	514
MsaG044730	AT4G33950.2	75.738	305	74	0	3	307	19	323	0.0	508
MsaG044730	AT1G10940.1	75.748	301	72	1	3	302	2	302	3.57e-178	498
MsaG044730	AT5G08590.1	72.669	311	85	0	3	313	2	312	1.18e-176	494
MsaG044730	AT5G66880.1	74.026	308	80	0	3	310	20	327	1.27e-176	494
MsaG044730	AT5G66880.2	74.026	308	80	0	3	310	20	327	1.27e-176	494
MsaG044730	AT5G63650.1	74.516	310	78	1	3	311	2	311	1.53e-176	494
MsaG044730	AT1G60940.1	72.381	315	86	1	3	316	2	316	2.20e-176	493
MsaG044730	AT1G60940.2	72.381	315	86	1	3	316	2	316	2.20e-176	493
MsaG044730	AT1G10940.2	73.786	309	72	2	3	302	2	310	5.12e-175	490

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Find 90 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTGGAAGAAATCATG+AGG	0.678349	8:+64096934	MsaT044730.1:CDS
AAATTTCAGAAAGACTATTG+GGG	0.653338	8:+64096373	MsaT044730.1:CDS
AAGACAATGGCTAGATGAGA+AGG	0.542672	8:-64095437	None:intergenic
AAGGGTTCTGTTTGATCTCT+GGG	0.412250	8:-64096830	None:intergenic
AATCATGAGGATCATACAAG+AGG	0.615898	8:+64096947	MsaT044730.1:CDS
AATGAACATGGAAGATGACG+AGG	0.658921	8:+64097031	MsaT044730.1:CDS
AATGCGTACATAGTCGGGAA+TGG	0.574086	8:-64096509	None:intergenic
ACACTCTATGTCATGTTAGT+TGG	0.538705	8:+64096317	MsaT044730.1:CDS
ACCTCGGGAGCAATGTATGC+AGG	0.537056	8:-64096053	None:intergenic
ACGAAAGGAGTATGATGGAA+AGG	0.592849	8:+64096082	MsaT044730.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	64093949	64097088	64093949	ID=MsaG044730
Chr8	mRNA	64093949	64097088	64093949	ID=MsaT044730.1;Parent=MsaG044730
Chr8	exon	64093949	64094071	64093949	ID=MsaT044730.1.exon1;Parent=MsaT044730.1
Chr8	CDS	64093949	64094071	64093949	ID=cds.MsaT044730.1;Parent=MsaT044730.1
Chr8	exon	64094486	64094560	64094486	ID=MsaT044730.1.exon2;Parent=MsaT044730.1
Chr8	CDS	64094486	64094560	64094486	ID=cds.MsaT044730.1;Parent=MsaT044730.1
Chr8	exon	64095425	64095526	64095425	ID=MsaT044730.1.exon3;Parent=MsaT044730.1
Chr8	CDS	64095425	64095526	64095425	ID=cds.MsaT044730.1;Parent=MsaT044730.1
Chr8	exon	64095642	64095695	64095642	ID=MsaT044730.1.exon4;Parent=MsaT044730.1
Chr8	CDS	64095642	64095695	64095642	ID=cds.MsaT044730.1;Parent=MsaT044730.1
Chr8	exon	64095768	64095860	64095768	ID=MsaT044730.1.exon5;Parent=MsaT044730.1
Chr8	CDS	64095768	64095860	64095768	ID=cds.MsaT044730.1;Parent=MsaT044730.1
Chr8	exon	64096011	64096103	64096011	ID=MsaT044730.1.exon6;Parent=MsaT044730.1
Chr8	CDS	64096011	64096103	64096011	ID=cds.MsaT044730.1;Parent=MsaT044730.1
Chr8	exon	64096290	64096394	64096290	ID=MsaT044730.1.exon7;Parent=MsaT044730.1
Chr8	CDS	64096290	64096394	64096290	ID=cds.MsaT044730.1;Parent=MsaT044730.1
Chr8	exon	64096487	64096585	64096487	ID=MsaT044730.1.exon8;Parent=MsaT044730.1
Chr8	CDS	64096487	64096585	64096487	ID=cds.MsaT044730.1;Parent=MsaT044730.1
Chr8	exon	64096819	64097088	64096819	ID=MsaT044730.1.exon9;Parent=MsaT044730.1
Chr8	CDS	64096819	64097088	64096819	ID=cds.MsaT044730.1;Parent=MsaT044730.1

Gene Sequence

>MsaT044730.1

ATGGAAGAAAGATATGAGCCATTGAAGGAACTTGGTTCTGGAAATTTTGGTGTTGCTAGGTTGGCTAAAGACAAAAATACTGGGGAACTTGTTGCTCTCAAATACATAGAGAGGGGTAAAAAGATTGATGAGAATGTTCAAAGGGAGATAATTAACCACCGATCGTTAAGGCATCCTAATATTATCAGATTCAAAGAGGTCTTGCTGACCCCTTCTCATCTAGCCATTGTCTTGGAGTATGCTTCTGGTGGTGAACTCTTTGAGAGGATATGCTCCGCTGGTCGATTTAGTGAAGATGAGGCAAGATATTTCTTCCAACAGCTAATATCCGGTGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGATCTGAAATTGGAAAACACTCTGTTGGACGGAAATCCATCCCCTCGGCTTAAAATTTGTGACTTTGGTTACTCCAAGTCTGCAATACTGCACTCTCAACCAAAGTCAACAGTTGGAACTCCTGCATACATTGCTCCCGAGGTTCTGTCACGAAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGTGTGACACTCTATGTCATGTTAGTTGGTGCATATCCATTTGAAGAACCAGAAGATCCTAGAAATTTCAGAAAGACTATTGGGAGAATAATAGGTGTTCAGTACTCCATTCCCGACTATGTACGCATTTCTGCAGAGTGTAGGAATCTTCTATCTCGCATCTTTGTTGCCGATCCTGCCAAGAGGGTCACCATCCCAGAGATCAAACAGAACCCTTGGTTTTTGAAGAATATGCCTAAAGAGATAATTGAAGCTGAAAGAAAAGGTTATGTGGAAACAAAGAAGGACCAACTAAGCCAAAGTGTGGAAGAAATCATGAGGATCATACAAGAGGCAAGGATACCGGGACAAGGATCTAAAGTCGGCGATGGTACTGGTCAAGCTGGTACCGGTTCAATGAACATGGAAGATGACGAGGAAATTGATGTCAGTGGTGAATATGAAAATGTCTGA

Protein sequence

>MsaT044730.1

MEERYEPLKELGSGNFGVARLAKDKNTGELVALKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVLLTPSHLAIVLEYASGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSAILHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEEPEDPRNFRKTIGRIIGVQYSIPDYVRISAECRNLLSRIFVADPAKRVTIPEIKQNPWFLKNMPKEIIEAERKGYVETKKDQLSQSVEEIMRIIQEARIPGQGSKVGDGTGQAGTGSMNMEDDEEIDVSGEYENV*