Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG044756 | KEH31637.1 | 83.784 | 518 | 46 | 2 | 65 | 549 | 3 | 515 | 0.0 | 898 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG044756 | sp|F4IXE7|IDM1_ARATH | 32.220 | 419 | 241 | 15 | 143 | 532 | 619 | 1023 | 2.94e-54 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG044756 | tr|A0A072UPL4|A0A072UPL4_MEDTR | 83.784 | 518 | 46 | 2 | 65 | 549 | 3 | 515 | 0.0 | 898 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG044756 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG043812 | MsaG044756 | 0.838578 | 4.868435e-57 | 1.817867e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG044756 | MtrunA17_Chr4g0055731 | 78.185 | 518 | 46 | 3 | 65 | 549 | 3 | 486 | 0.0 | 823 |
| MsaG044756 | MtrunA17_Chr1g0205451 | 32.812 | 448 | 249 | 14 | 142 | 549 | 603 | 1038 | 4.55e-62 | 221 |
| MsaG044756 | MtrunA17_Chr1g0185491 | 32.227 | 422 | 245 | 11 | 142 | 532 | 809 | 1220 | 1.41e-59 | 214 |
| MsaG044756 | MtrunA17_Chr2g0316251 | 28.806 | 427 | 257 | 14 | 139 | 532 | 754 | 1166 | 3.80e-49 | 183 |
| MsaG044756 | MtrunA17_Chr5g0430361 | 28.132 | 455 | 278 | 17 | 111 | 532 | 619 | 1057 | 5.44e-47 | 176 |
| MsaG044756 | MtrunA17_Chr3g0105291 | 26.949 | 449 | 278 | 16 | 122 | 539 | 585 | 1014 | 2.92e-43 | 165 |
| MsaG044756 | MtrunA17_Chr7g0270101 | 28.141 | 398 | 231 | 10 | 144 | 505 | 383 | 761 | 4.04e-41 | 158 |
| MsaG044756 | MtrunA17_Chr5g0407251 | 26.450 | 431 | 260 | 13 | 145 | 532 | 3 | 419 | 1.13e-37 | 144 |
| MsaG044756 | MtrunA17_Chr5g0407211 | 26.218 | 431 | 261 | 13 | 145 | 532 | 3 | 419 | 6.97e-37 | 142 |
| MsaG044756 | MtrunA17_Chr3g0134821 | 23.044 | 473 | 297 | 12 | 105 | 532 | 382 | 832 | 4.67e-32 | 131 |
| MsaG044756 | MtrunA17_Chr3g0134811 | 27.414 | 321 | 188 | 11 | 239 | 532 | 489 | 791 | 5.83e-30 | 125 |
| MsaG044756 | MtrunA17_Chr7g0259981 | 28.105 | 306 | 194 | 9 | 250 | 546 | 17 | 305 | 5.43e-28 | 114 |
| MsaG044756 | MtrunA17_Chr3g0134851 | 28.238 | 386 | 215 | 11 | 172 | 532 | 116 | 464 | 3.23e-27 | 114 |
| MsaG044756 | MtrunA17_Chr1g0182481 | 23.129 | 441 | 237 | 14 | 155 | 522 | 472 | 883 | 5.67e-27 | 115 |
| MsaG044756 | MtrunA17_Chr1g0179841 | 23.956 | 455 | 255 | 12 | 155 | 532 | 362 | 802 | 7.10e-27 | 115 |
| MsaG044756 | MtrunA17_Chr7g0265211 | 21.847 | 444 | 233 | 14 | 155 | 510 | 507 | 924 | 4.87e-25 | 110 |
| MsaG044756 | MtrunA17_Chr2g0320451 | 25.714 | 175 | 125 | 2 | 359 | 530 | 849 | 1021 | 2.21e-17 | 86.3 |
| MsaG044756 | MtrunA17_Chr4g0025251 | 26.554 | 177 | 123 | 4 | 359 | 533 | 531 | 702 | 7.62e-16 | 80.9 |
| MsaG044756 | MtrunA17_Chr4g0028111 | 26.351 | 148 | 105 | 2 | 359 | 506 | 419 | 562 | 2.92e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG044756 | AT5G36740.5 | 33.107 | 441 | 255 | 11 | 124 | 533 | 519 | 950 | 3.24e-66 | 233 |
| MsaG044756 | AT5G36740.1 | 33.107 | 441 | 255 | 11 | 124 | 533 | 519 | 950 | 3.24e-66 | 233 |
| MsaG044756 | AT4G14920.2 | 34.679 | 421 | 233 | 12 | 142 | 533 | 577 | 984 | 6.59e-66 | 232 |
| MsaG044756 | AT4G14920.1 | 34.679 | 421 | 233 | 12 | 142 | 533 | 577 | 984 | 6.59e-66 | 232 |
| MsaG044756 | AT4G14920.3 | 34.679 | 421 | 233 | 12 | 142 | 533 | 577 | 984 | 6.75e-66 | 232 |
| MsaG044756 | AT5G36740.4 | 33.178 | 428 | 241 | 11 | 142 | 533 | 389 | 807 | 2.41e-65 | 230 |
| MsaG044756 | AT1G05380.3 | 33.023 | 430 | 238 | 14 | 142 | 537 | 517 | 930 | 3.54e-63 | 224 |
| MsaG044756 | AT1G05380.1 | 33.023 | 430 | 238 | 14 | 142 | 537 | 517 | 930 | 3.54e-63 | 224 |
| MsaG044756 | AT1G05380.2 | 33.023 | 430 | 238 | 14 | 142 | 537 | 517 | 930 | 3.54e-63 | 224 |
| MsaG044756 | AT5G36670.4 | 30.853 | 457 | 258 | 13 | 124 | 533 | 519 | 964 | 5.01e-56 | 204 |
| MsaG044756 | AT5G36670.5 | 30.853 | 457 | 258 | 13 | 124 | 533 | 519 | 964 | 5.01e-56 | 204 |
| MsaG044756 | AT3G14980.6 | 32.220 | 419 | 241 | 15 | 143 | 532 | 619 | 1023 | 2.99e-55 | 201 |
| MsaG044756 | AT3G14980.1 | 32.220 | 419 | 241 | 15 | 143 | 532 | 619 | 1023 | 2.99e-55 | 201 |
| MsaG044756 | AT3G14980.2 | 32.220 | 419 | 241 | 15 | 143 | 532 | 619 | 1023 | 2.99e-55 | 201 |
| MsaG044756 | AT3G14980.5 | 32.220 | 419 | 241 | 15 | 143 | 532 | 574 | 978 | 3.92e-55 | 201 |
| MsaG044756 | AT5G36670.3 | 30.856 | 444 | 244 | 13 | 142 | 533 | 389 | 821 | 4.61e-55 | 201 |
| MsaG044756 | AT3G14980.3 | 32.220 | 419 | 241 | 15 | 143 | 532 | 619 | 1023 | 6.21e-55 | 200 |
| MsaG044756 | AT5G36670.1 | 30.407 | 467 | 257 | 14 | 124 | 533 | 519 | 974 | 9.55e-55 | 200 |
| MsaG044756 | AT5G36670.2 | 31.937 | 382 | 221 | 10 | 124 | 474 | 519 | 892 | 5.23e-50 | 185 |
| MsaG044756 | AT5G36740.2 | 31.937 | 382 | 221 | 10 | 124 | 474 | 519 | 892 | 5.23e-50 | 185 |
| MsaG044756 | AT5G36740.3 | 31.937 | 382 | 221 | 10 | 124 | 474 | 519 | 892 | 5.23e-50 | 185 |
| MsaG044756 | AT5G58610.4 | 27.315 | 432 | 262 | 15 | 139 | 533 | 362 | 778 | 2.22e-37 | 148 |
| MsaG044756 | AT5G58610.7 | 27.083 | 432 | 263 | 14 | 139 | 533 | 584 | 1000 | 3.22e-37 | 147 |
| MsaG044756 | AT5G58610.3 | 27.315 | 432 | 262 | 15 | 139 | 533 | 593 | 1009 | 3.64e-37 | 147 |
| MsaG044756 | AT5G58610.5 | 27.083 | 432 | 263 | 14 | 139 | 533 | 584 | 1000 | 3.93e-37 | 147 |
| MsaG044756 | AT5G58610.8 | 27.083 | 432 | 263 | 14 | 139 | 533 | 593 | 1009 | 4.00e-37 | 147 |
| MsaG044756 | AT5G58610.2 | 27.083 | 432 | 263 | 14 | 139 | 533 | 593 | 1009 | 4.00e-37 | 147 |
| MsaG044756 | AT5G58610.1 | 25.776 | 419 | 259 | 12 | 139 | 533 | 584 | 974 | 1.81e-36 | 145 |
| MsaG044756 | AT5G58610.6 | 25.776 | 419 | 259 | 12 | 139 | 533 | 584 | 974 | 2.55e-36 | 145 |
| MsaG044756 | AT3G14980.4 | 29.787 | 329 | 189 | 13 | 143 | 442 | 619 | 934 | 7.59e-32 | 131 |
| MsaG044756 | AT2G37520.1 | 23.736 | 455 | 245 | 15 | 155 | 532 | 386 | 815 | 1.72e-30 | 127 |
| MsaG044756 | AT3G53680.1 | 23.620 | 453 | 247 | 15 | 155 | 532 | 403 | 831 | 2.51e-30 | 126 |
| MsaG044756 | AT3G53680.2 | 23.620 | 453 | 247 | 15 | 155 | 532 | 405 | 833 | 2.52e-30 | 126 |
| MsaG044756 | AT5G58610.10 | 26.720 | 378 | 226 | 13 | 139 | 479 | 593 | 956 | 7.93e-29 | 122 |
| MsaG044756 | AT5G58610.9 | 26.720 | 378 | 226 | 13 | 139 | 479 | 584 | 947 | 1.45e-28 | 121 |
| MsaG044756 | AT2G36720.1 | 24.078 | 461 | 243 | 17 | 155 | 530 | 533 | 971 | 7.25e-27 | 116 |
| MsaG044756 | AT2G36720.2 | 24.078 | 461 | 243 | 17 | 155 | 530 | 533 | 971 | 7.25e-27 | 116 |
| MsaG044756 | AT2G27980.1 | 23.656 | 465 | 248 | 16 | 155 | 532 | 613 | 1057 | 1.80e-26 | 115 |
| MsaG044756 | AT5G58610.11 | 25.882 | 340 | 201 | 13 | 139 | 441 | 584 | 909 | 2.06e-20 | 95.9 |
| MsaG044756 | AT5G63900.1 | 24.746 | 295 | 202 | 9 | 246 | 532 | 258 | 540 | 2.31e-19 | 92.0 |
Find 116 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCCATTGATATTATTT+TGG | 0.141230 | 8:+64394023 | None:intergenic |
| ACGAATTTGCCATTTGTTAA+TGG | 0.158481 | 8:-64393157 | MsaT044756.1:CDS |
| TCACTTATTTCCACATAATT+TGG | 0.186213 | 8:+64395362 | None:intergenic |
| TCCCAGAAATTACCTATTTC+AGG | 0.195115 | 8:+64395242 | None:intergenic |
| TCCGGATTAATACTCGTTTC+TGG | 0.199791 | 8:+64395146 | None:intergenic |
| GACCTGAAATAGGTAATTTC+TGG | 0.234540 | 8:-64395244 | MsaT044756.1:CDS |
| CTTTCAACCATTTACTAATC+AGG | 0.274878 | 8:+64394733 | None:intergenic |
| ATTTACTAATCAGGATGTTT+TGG | 0.283205 | 8:+64394742 | None:intergenic |
| TTGAAAATTCGACCGGTTAT+CGG | 0.303297 | 8:+64394888 | None:intergenic |
| AAAACATCCTGATTAGTAAA+TGG | 0.312020 | 8:-64394740 | MsaT044756.1:CDS |
| TCAACAGTTTGTGGATTAGA+TGG | 0.321798 | 8:+64392765 | None:intergenic |
| TGCTTCTAATTGACAGTATT+AGG | 0.322640 | 8:+64392591 | None:intergenic |
| CCTTGACTCTACAGATTTCA+TGG | 0.325979 | 8:-64393234 | MsaT044756.1:intron |
| TGGACTTGAATGAGCCATTC+GGG | 0.345809 | 8:-64392623 | MsaT044756.1:CDS |
| TCCATTGGCAAACTTTGTTC+CGG | 0.346997 | 8:+64395128 | None:intergenic |
| TTGAAGGGTTAGAAGCAAAC+TGG | 0.364828 | 8:-64395313 | MsaT044756.1:CDS |
| CTTGTTTCGTTCATTGATGA+TGG | 0.366832 | 8:+64395098 | None:intergenic |
| AAATTACCTATTTCAGGTCT+TGG | 0.368746 | 8:+64395248 | None:intergenic |
| CGTAGACCAAGACCTGAAAT+AGG | 0.369525 | 8:-64395254 | MsaT044756.1:CDS |
| TAAACAAACAATGTCATGTA+TGG | 0.389738 | 8:+64394671 | None:intergenic |
| TGCAGCTGCTTGCATGTTGA+TGG | 0.397741 | 8:-64393924 | MsaT044756.1:CDS |
| GCAACCATACAAACGCATTT+CGG | 0.399165 | 8:-64394787 | MsaT044756.1:CDS |
| GTTTGTTTAGTTTGTGGAAA+AGG | 0.400119 | 8:-64394657 | MsaT044756.1:CDS |
| GCTATTTCATTCACCGATGA+TGG | 0.410514 | 8:+64395179 | None:intergenic |
| TCAACAAACAAGTCATAATC+TGG | 0.410645 | 8:-64395069 | MsaT044756.1:CDS |
| ATGGGAATGAGAGGTATTCT+TGG | 0.411367 | 8:-64394009 | MsaT044756.1:CDS |
| TACACTGCTTGTTGCATTGG+CGG | 0.412327 | 8:+64394357 | None:intergenic |
| ACTTACACTGCTTGTTGCAT+TGG | 0.420126 | 8:+64394354 | None:intergenic |
| GACATTGTTTGTTTAGTTTG+TGG | 0.426333 | 8:-64394663 | MsaT044756.1:CDS |
| CTGCAAGTGCAAATACTGTA+AGG | 0.426643 | 8:-64394417 | MsaT044756.1:CDS |
| GGAATCCAAAATAATATCAA+TGG | 0.427814 | 8:-64394028 | MsaT044756.1:CDS |
| ATTAAGCAAAAGACTTCTAC+TGG | 0.430490 | 8:-64392643 | MsaT044756.1:CDS |
| CTGGACTTGAATGAGCCATT+CGG | 0.434486 | 8:-64392624 | MsaT044756.1:CDS |
| GAAGTCCCCGCTGTTGCGCT+TGG | 0.436355 | 8:+64395020 | None:intergenic |
| AAAGATTGATGAGAAATTGA+AGG | 0.437819 | 8:-64394059 | MsaT044756.1:intron |
| GAGAAATTGAAGGGATCAAT+CGG | 0.439072 | 8:-64394049 | MsaT044756.1:CDS |
| ACCTGAAATAGGTAATTTCT+GGG | 0.445985 | 8:-64395243 | MsaT044756.1:CDS |
| CAATTATCTCCATTAACAAA+TGG | 0.453252 | 8:+64393148 | None:intergenic |
| ATGTTGATGGAAGAAGCTTT+TGG | 0.456514 | 8:-64393911 | MsaT044756.1:CDS |
| GTTAATGGAGATAATTGAAT+CGG | 0.460264 | 8:-64393142 | MsaT044756.1:intron |
| TTGCTTAATCGTATAGCTCC+GGG | 0.462605 | 8:+64392657 | None:intergenic |
| CTCAGGAAAACGACAACCAT+TGG | 0.462642 | 8:-64394451 | MsaT044756.1:CDS |
| GAAACTCCAAGCGCAACAGC+GGG | 0.464068 | 8:-64395026 | MsaT044756.1:CDS |
| TTGGAGAGTCCTCCAACAAA+TGG | 0.464964 | 8:-64393990 | MsaT044756.1:CDS |
| TTTGCTTAATCGTATAGCTC+CGG | 0.467808 | 8:+64392656 | None:intergenic |
| TCCAGAAACGAGTATTAATC+CGG | 0.472181 | 8:-64395147 | MsaT044756.1:CDS |
| GCCACCGAAATGCGTTTGTA+TGG | 0.477551 | 8:+64394783 | None:intergenic |
| TTCCACATTTCAACAGTTTG+TGG | 0.481433 | 8:+64392756 | None:intergenic |
| TTCGAAGTCTTGAAGTTGAA+AGG | 0.481443 | 8:-64392797 | MsaT044756.1:CDS |
| TGAAGATGGCATATACTTTG+AGG | 0.486004 | 8:-64395397 | None:intergenic |
| AGAAACTCCAAGCGCAACAG+CGG | 0.487445 | 8:-64395027 | MsaT044756.1:CDS |
| CCGAGGTGCGTTACCATGAT+GGG | 0.489289 | 8:-64394917 | MsaT044756.1:CDS |
| GAATCCAAAATAATATCAAT+GGG | 0.493433 | 8:-64394027 | MsaT044756.1:CDS |
| ACCGAGGTGCGTTACCATGA+TGG | 0.496123 | 8:-64394918 | MsaT044756.1:CDS |
| TAGCTCCGGGGAACATCAAA+AGG | 0.501144 | 8:+64392670 | None:intergenic |
| ATGATAACAGACACACATAC+TGG | 0.502452 | 8:-64393887 | MsaT044756.1:CDS |
| TGGAAAAGGAGAAGATGAAG+GGG | 0.508556 | 8:-64394643 | MsaT044756.1:CDS |
| GAAGATGGCATATACTTTGA+GGG | 0.519625 | 8:-64395396 | None:intergenic |
| TGTGGAAAAGGAGAAGATGA+AGG | 0.530192 | 8:-64394645 | MsaT044756.1:CDS |
| TCCGGAACAAAGTTTGCCAA+TGG | 0.531404 | 8:-64395129 | MsaT044756.1:CDS |
| AAGATTGATGAGAAATTGAA+GGG | 0.532048 | 8:-64394058 | MsaT044756.1:CDS |
| AGCACAAGAACGGTGATAAG+TGG | 0.533107 | 8:+64394593 | None:intergenic |
| GAAAGTGAGTCAAATATTGA+AGG | 0.536289 | 8:-64395329 | MsaT044756.1:CDS |
| GTCGCAACAGCTACATAAGA+TGG | 0.537125 | 8:+64394860 | None:intergenic |
| GGCTCCATTGAAAATTCGAC+CGG | 0.537301 | 8:+64394881 | None:intergenic |
| GATGATGGAACTGTTTCCAT+TGG | 0.538815 | 8:+64395113 | None:intergenic |
| AACTGAAACACCTCCATCAT+CGG | 0.540100 | 8:-64395192 | MsaT044756.1:CDS |
| AGTTGTCAACCATGCTAGGA+TGG | 0.543516 | 8:+64394962 | None:intergenic |
| CTTGACTCTACAGATTTCAT+GGG | 0.545472 | 8:-64393233 | MsaT044756.1:intron |
| GACCGTCGACCTCGTCGACC+TGG | 0.547724 | 8:+64395284 | None:intergenic |
| AATACTCGTTTCTGGAACAA+TGG | 0.548088 | 8:+64395154 | None:intergenic |
| CTGTAAGGGTGATGATGAAG+AGG | 0.550087 | 8:-64394402 | MsaT044756.1:CDS |
| TGGCGGCACATGATGTCTAA+AGG | 0.550630 | 8:+64394374 | None:intergenic |
| ACTTGCAAGGAAATTGATGA+AGG | 0.553512 | 8:-64394942 | MsaT044756.1:CDS |
| GCCTCATCTGTGGCAATGAA+AGG | 0.555749 | 8:+64393192 | None:intergenic |
| TGCAAGTTGTCAACCATGCT+AGG | 0.558541 | 8:+64394958 | None:intergenic |
| GCCTTTCATTGCCACAGATG+AGG | 0.563244 | 8:-64393193 | MsaT044756.1:CDS |
| CCCATCATGGTAACGCACCT+CGG | 0.563559 | 8:+64394917 | None:intergenic |
| GATTAGTAAATGGTTGAAAG+AGG | 0.563585 | 8:-64394730 | MsaT044756.1:CDS |
| AAACAAACAATGTCATGTAT+GGG | 0.563802 | 8:+64394672 | None:intergenic |
| TTATGTAATAAGCAATTCAA+AGG | 0.566767 | 8:-64393948 | MsaT044756.1:CDS |
| ACGCACAAGACCAAATTATG+TGG | 0.574274 | 8:-64395372 | MsaT044756.1:CDS |
| ATAATATCAATGGGAATGAG+AGG | 0.575607 | 8:-64394018 | MsaT044756.1:CDS |
| AGTTTGTGGATTAGATGGAA+TGG | 0.581324 | 8:+64392770 | None:intergenic |
| GCCTCTGTATGCCTCATCTG+TGG | 0.584277 | 8:+64393182 | None:intergenic |
| ATCCACAAACTGTTGAAATG+TGG | 0.588515 | 8:-64392758 | MsaT044756.1:CDS |
| GCGACGAGGAAATCTCTGTA+TGG | 0.591878 | 8:-64394842 | MsaT044756.1:CDS |
| GTGGAAAAGGAGAAGATGAA+GGG | 0.593089 | 8:-64394644 | MsaT044756.1:CDS |
| TGAAGGGTTAGAAGCAAACT+GGG | 0.594789 | 8:-64395312 | MsaT044756.1:CDS |
| AAAGTGAGTCAAATATTGAA+GGG | 0.601009 | 8:-64395328 | MsaT044756.1:CDS |
| ACCATACAAACGCATTTCGG+TGG | 0.602664 | 8:-64394784 | MsaT044756.1:CDS |
| TAATTGCTGCAGCTACCGTA+AGG | 0.611328 | 8:-64393405 | MsaT044756.1:intron |
| TGCTTAGATCAAATCTGAGG+AGG | 0.617602 | 8:-64393477 | MsaT044756.1:intron |
| CCTGTATAAAAGCACAAGAA+CGG | 0.617850 | 8:+64394583 | None:intergenic |
| ACAAGAACGGTGATAAGTGG+AGG | 0.625049 | 8:+64394596 | None:intergenic |
| AGCATGGTTGACAACTTGCA+AGG | 0.627667 | 8:-64394955 | MsaT044756.1:CDS |
| TGCAAGTGCAAATACTGTAA+GGG | 0.630487 | 8:-64394416 | MsaT044756.1:CDS |
| ATTTCATTCACCGATGATGG+AGG | 0.630618 | 8:+64395182 | None:intergenic |
| AACCAGGTCGACGAGGTCGA+CGG | 0.633162 | 8:-64395286 | MsaT044756.1:CDS |
| TGCAGTAAGAACATAACCAA+TGG | 0.637831 | 8:+64394435 | None:intergenic |
| AATTGCTTAGATCAAATCTG+AGG | 0.638264 | 8:-64393480 | MsaT044756.1:intron |
| AACGCATTTCGGTGGCAAAG+CGG | 0.641653 | 8:-64394776 | MsaT044756.1:CDS |
| CGAGGTGCGTTACCATGATG+GGG | 0.652213 | 8:-64394916 | MsaT044756.1:CDS |
| CTTGCAAGGAAATTGATGAA+GGG | 0.653849 | 8:-64394941 | MsaT044756.1:CDS |
| ACAAATGGATACGAAAAGTG+AGG | 0.660093 | 8:-64393975 | MsaT044756.1:CDS |
| TTAGGCTCAACATCCCCGAA+TGG | 0.660828 | 8:+64392609 | None:intergenic |
| CACACATACTGGCGTCAATG+TGG | 0.663750 | 8:-64393876 | MsaT044756.1:CDS |
| CTTATGTAGCTGTTGCGACG+AGG | 0.663870 | 8:-64394856 | MsaT044756.1:CDS |
| GGAAAAGGAGAAGATGAAGG+GGG | 0.669030 | 8:-64394642 | MsaT044756.1:CDS |
| CAAGAACGGTGATAAGTGGA+GGG | 0.669312 | 8:+64394597 | None:intergenic |
| GCCACAGATGAGGCATACAG+AGG | 0.671197 | 8:-64393183 | MsaT044756.1:CDS |
| AGAGTGTTCTATACAACCGC+AGG | 0.671533 | 8:-64393850 | MsaT044756.1:intron |
| TGCTTAATCGTATAGCTCCG+GGG | 0.678737 | 8:+64392658 | None:intergenic |
| GGAAATTGATGAAGGGACCG+AGG | 0.685280 | 8:-64394934 | MsaT044756.1:CDS |
| GGACTTGAATGAGCCATTCG+GGG | 0.695242 | 8:-64392622 | MsaT044756.1:CDS |
| AAACTCCAAGCGCAACAGCG+GGG | 0.743032 | 8:-64395025 | MsaT044756.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 64392596 | 64395414 | 64392596 | ID=MsaG044756 |
| Chr8 | mRNA | 64392596 | 64395414 | 64392596 | ID=MsaT044756.1;Parent=MsaG044756 |
| Chr8 | exon | 64392596 | 64392823 | 64392596 | ID=MsaT044756.1.exon7;Parent=MsaT044756.1 |
| Chr8 | CDS | 64392596 | 64392823 | 64392596 | ID=cds.MsaT044756.1;Parent=MsaT044756.1 |
| Chr8 | exon | 64393143 | 64393242 | 64393143 | ID=MsaT044756.1.exon6;Parent=MsaT044756.1 |
| Chr8 | CDS | 64393143 | 64393242 | 64393143 | ID=cds.MsaT044756.1;Parent=MsaT044756.1 |
| Chr8 | exon | 64393406 | 64393492 | 64393406 | ID=MsaT044756.1.exon5;Parent=MsaT044756.1 |
| Chr8 | CDS | 64393406 | 64393492 | 64393406 | ID=cds.MsaT044756.1;Parent=MsaT044756.1 |
| Chr8 | exon | 64393851 | 64394077 | 64393851 | ID=MsaT044756.1.exon4;Parent=MsaT044756.1 |
| Chr8 | CDS | 64393851 | 64394077 | 64393851 | ID=cds.MsaT044756.1;Parent=MsaT044756.1 |
| Chr8 | exon | 64394184 | 64394239 | 64394184 | ID=MsaT044756.1.exon3;Parent=MsaT044756.1 |
| Chr8 | CDS | 64394184 | 64394239 | 64394184 | ID=cds.MsaT044756.1;Parent=MsaT044756.1 |
| Chr8 | exon | 64394360 | 64394480 | 64394360 | ID=MsaT044756.1.exon2;Parent=MsaT044756.1 |
| Chr8 | CDS | 64394360 | 64394480 | 64394360 | ID=cds.MsaT044756.1;Parent=MsaT044756.1 |
| Chr8 | exon | 64394584 | 64395414 | 64394584 | ID=MsaT044756.1.exon1;Parent=MsaT044756.1 |
| Chr8 | CDS | 64394584 | 64395414 | 64394584 | ID=cds.MsaT044756.1;Parent=MsaT044756.1 |
| Gene Sequence |
| Protein sequence |