AlfalfaGEDB | MsaG044780

M. sativa ssp. caerulea / MsaG044780

KEGG: K09422
GO: -
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044780	RHN63223.1	95.722	187	8	0	1	187	43	229	3.53e-129	372

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044780	sp\|A0A4D6Q411\|MYB1_CROXC	62.687	134	47	1	4	134	3	136	9.11e-53	172

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044780	tr\|A0A396IEI4\|A0A396IEI4_MEDTR	95.722	187	8	0	1	187	43	229	1.68e-129	372

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG044780	TF	MYB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044780	MtrunA17_Chr4g0055981	95.722	187	8	0	1	187	43	229	3.24e-133	372
MsaG044780	MtrunA17_Chr4g0070641	66.942	121	40	0	9	129	8	128	2.97e-55	173
MsaG044780	MtrunA17_Chr4g0070611	66.942	121	40	0	9	129	8	128	5.42e-55	177
MsaG044780	MtrunA17_Chr5g0435101	66.372	113	38	0	4	116	2	114	1.69e-51	165
MsaG044780	MtrunA17_Chr7g0275911	64.912	114	40	0	9	122	8	121	2.97e-51	166
MsaG044780	MtrunA17_Chr8g0346561	59.843	127	51	0	9	135	8	134	3.90e-51	166
MsaG044780	MtrunA17_Chr8g0343831	71.154	104	30	0	13	116	8	111	1.04e-50	164
MsaG044780	MtrunA17_Chr7g0240821	61.157	121	47	0	13	133	1	121	1.29e-49	160
MsaG044780	MtrunA17_Chr3g0121241	65.741	108	37	0	9	116	38	145	4.28e-49	161
MsaG044780	MtrunA17_Chr3g0131121	58.462	130	48	1	10	133	9	138	9.62e-49	160

Showing 1 to 10 of 166 entries

Previous1 2 3 4 5…17Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044780	AT5G35550.1	62.308	130	49	0	10	139	11	140	3.07e-51	166
MsaG044780	AT5G14750.1	47.929	169	71	2	15	166	18	186	1.35e-49	160
MsaG044780	AT3G13540.1	62.712	118	44	0	9	126	19	136	2.56e-49	160
MsaG044780	AT1G22640.1	66.355	107	36	0	10	116	9	115	5.75e-49	160
MsaG044780	AT5G40330.1	53.103	145	54	2	15	145	14	158	9.80e-49	158
MsaG044780	AT1G35515.1	44.330	194	85	3	10	187	9	195	1.30e-48	157
MsaG044780	AT4G09460.1	60.684	117	46	0	10	126	9	125	1.84e-48	158
MsaG044780	AT4G38620.1	64.486	107	38	0	10	116	9	115	3.09e-48	159
MsaG044780	AT5G52600.1	57.692	130	55	0	10	139	9	138	3.35e-48	156
MsaG044780	AT2G16720.1	64.486	107	38	0	10	116	9	115	5.96e-48	158

Showing 1 to 10 of 216 entries

Previous1 2 3 4 5…22Next

Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGTTGCAAACAATTC+AGG	0.371468	8:+64792513	MsaT044780.1:CDS
AAACAATGAATAGAGGAGCA+TGG	0.625013	8:+64792430	MsaT044780.1:CDS
AAACCCATATGGTTCTTCAG+TGG	0.603396	8:-64793215	None:intergenic
AAATTCATGGTGCCAAGAAA+TGG	0.392964	8:+64792490	MsaT044780.1:CDS
AAGAACCATATGGGTTTGAT+TGG	0.366727	8:+64793221	MsaT044780.1:CDS
AAGAAGAGGATTTGATTATT+AGG	0.284473	8:+64792741	MsaT044780.1:CDS
AATGTTCCCTCTCTTGATAT+TGG	0.336344	8:-64792711	None:intergenic
ACAACGAAATTAAGAACTAT+TGG	0.381215	8:+64793011	MsaT044780.1:CDS
ACTAAGGAAACAATGAATAG+AGG	0.506733	8:+64792423	MsaT044780.1:CDS
AGAACCATATGGGTTTGATT+GGG	0.507623	8:+64793222	MsaT044780.1:CDS

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	64792399	64793300	64792399	ID=MsaG044780
Chr8	mRNA	64792399	64793300	64792399	ID=MsaT044780.1;Parent=MsaG044780
Chr8	exon	64792399	64792534	64792399	ID=MsaT044780.1.exon1;Parent=MsaT044780.1
Chr8	CDS	64792399	64792534	64792399	ID=cds.MsaT044780.1;Parent=MsaT044780.1
Chr8	exon	64792657	64792786	64792657	ID=MsaT044780.1.exon2;Parent=MsaT044780.1
Chr8	CDS	64792657	64792786	64792657	ID=cds.MsaT044780.1;Parent=MsaT044780.1
Chr8	exon	64792973	64793300	64792973	ID=MsaT044780.1.exon3;Parent=MsaT044780.1
Chr8	CDS	64792973	64793300	64792973	ID=cds.MsaT044780.1;Parent=MsaT044780.1

Gene Sequence

>MsaT044780.1

ATGGCACCCAGAAAATATGGACCTACTAAGGAAACAATGAATAGAGGAGCATGGACCCAGGAGGAAGATCAAAAGCTAGCACAATGCATCCAAATTCATGGTGCCAAGAAATGGAAAACCGTTGCAAACAATTCAGGTTTGAATAGGTGTGGAAAGAGTTGCAGGCTAAGATGGTTGAACTATCTTAGACCCAATATCAAGAGAGGGAACATTTCAGATGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTTCTTGGAAACAGGTGGTCTTTGATTGCTGGAAGACTTCCAGGGCGAACAGACAACGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGCCAGTCACATAGAGGAAAAACCAGAAACTTCCACTACACAAGAAACTATTGCCCAAGACAATGTTGTTGGGGATAATGCTATGTTAGAGAATAAAGATTCAATTGGTGGAAGTCTTGATTCAGATGTTATCATTGATGTGAATGAATTCTTAGACTTTTCCACTGAAGAACCATATGGGTTTGATTGGGTCAATAAATTCTTGGAAATTGATCGGTTTCACATTCCTGAGAACAGAAACATCTGA

Protein sequence

>MsaT044780.1

MAPRKYGPTKETMNRGAWTQEEDQKLAQCIQIHGAKKWKTVANNSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKASHIEEKPETSTTQETIAQDNVVGDNAMLENKDSIGGSLDSDVIIDVNEFLDFSTEEPYGFDWVNKFLEIDRFHIPENRNI*