AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG044875

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG044875 MtrunA17_Chr4g0057151 93.365 211 8 1 1 211 1 205 1.79e-137 383
MsaG044875 MtrunA17_Chr8g0351031 58.525 217 81 4 1 209 1 216 2.49e-76 229
MsaG044875 MtrunA17_Chr7g0246431 57.971 207 84 1 1 204 1 207 8.06e-72 217
MsaG044875 MtrunA17_Chr8g0351041 65.190 158 52 2 1 156 1 157 2.46e-64 196
MsaG044875 MtrunA17_Chr8g0351051 50.857 175 70 3 1 167 1 167 9.11e-49 159
MsaG044875 MtrunA17_Chr3g0077501 47.619 168 86 1 1 168 1 166 5.27e-46 151
MsaG044875 MtrunA17_Chr7g0220111 47.093 172 81 4 1 167 1 167 1.28e-44 149
MsaG044875 MtrunA17_Chr5g0420091 49.708 171 73 3 1 164 1 165 3.58e-44 147
MsaG044875 MtrunA17_Chr2g0279821 45.161 186 79 3 1 175 1 174 1.01e-43 146
MsaG044875 MtrunA17_Chr6g0455511 47.093 172 81 4 1 167 1 167 1.07e-43 146
MsaG044875 MtrunA17_Chr2g0284911 45.238 168 89 3 3 169 18 183 1.66e-43 146
MsaG044875 MtrunA17_Chr3g0097101 46.471 170 85 2 1 167 16 182 1.83e-42 143
MsaG044875 MtrunA17_Chr4g0061671 47.126 174 89 3 1 173 1 172 1.92e-42 141
MsaG044875 MtrunA17_Chr3g0122251 46.067 178 78 3 1 167 1 171 2.15e-41 140
MsaG044875 MtrunA17_Chr8g0366231 46.552 174 80 3 1 167 1 168 5.16e-41 139
MsaG044875 MtrunA17_Chr8g0380021 42.424 165 95 0 3 167 19 183 5.38e-41 139
MsaG044875 MtrunA17_Chr4g0061691 47.337 169 86 3 1 167 1 168 1.47e-40 138
MsaG044875 MtrunA17_Chr7g0220121 46.199 171 87 3 1 169 1 168 3.42e-40 137
MsaG044875 MtrunA17_Chr4g0049541 43.243 185 91 3 1 178 1 178 1.39e-38 132
MsaG044875 MtrunA17_Chr5g0420081 45.198 177 84 3 1 170 1 171 3.23e-37 129
MsaG044875 MtrunA17_Chr1g0164791 42.135 178 88 4 1 168 1 173 5.76e-37 129
MsaG044875 MtrunA17_Chr4g0049901 41.121 214 114 5 1 206 27 236 8.63e-37 128
MsaG044875 MtrunA17_Chr1g0204111 44.048 168 93 1 1 167 17 184 2.78e-36 127
MsaG044875 MtrunA17_Chr5g0411691 41.808 177 101 2 1 177 1 175 2.22e-35 125
MsaG044875 MtrunA17_Chr6g0474371 45.882 170 88 3 1 167 1 169 3.13e-35 123
MsaG044875 MtrunA17_Chr5g0412271 39.631 217 115 6 1 207 1 211 2.76e-34 122
MsaG044875 MtrunA17_Chr5g0412461 38.389 211 125 4 1 207 1 210 5.95e-34 120
MsaG044875 MtrunA17_Chr4g0020221 44.571 175 89 2 1 170 1 172 5.84e-33 119
MsaG044875 MtrunA17_Chr4g0018421 41.341 179 83 6 1 167 1 169 6.80e-33 117
MsaG044875 MtrunA17_Chr3g0142191 41.875 160 82 4 1 156 1 153 1.11e-30 112
MsaG044875 MtrunA17_Chr5g0427401 38.372 172 94 2 1 167 1 165 6.74e-30 110
MsaG044875 MtrunA17_Chr3g0125241 40.000 170 89 4 1 167 26 185 9.19e-29 107
MsaG044875 MtrunA17_Chr7g0246381 75.410 61 15 0 1 61 1 61 4.40e-27 98.6
MsaG044875 MtrunA17_Chr1g0173161 78.333 60 13 0 1 60 1 60 1.37e-26 97.8
MsaG044875 MtrunA17_Chr5g0404951 36.364 176 95 3 1 167 1 168 1.57e-26 101
MsaG044875 MtrunA17_Chr2g0308251 68.116 69 22 0 1 69 1 69 4.22e-26 96.7
MsaG044875 MtrunA17_Chr8g0377561 78.947 57 12 0 1 57 1 57 5.40e-26 96.7
MsaG044875 MtrunA17_Chr1g0159661 37.278 169 95 4 1 167 1 160 4.41e-25 96.7
MsaG044875 MtrunA17_Chr5g0427921 66.667 60 20 0 1 60 1 60 1.36e-24 91.7
MsaG044875 MtrunA17_Chr3g0134451 54.945 91 36 2 1 90 1 87 5.99e-22 91.3
MsaG044875 MtrunA17_Chr1g0166611 83.333 48 8 0 13 60 17 64 4.14e-21 85.1
MsaG044875 MtrunA17_Chr5g0425191 65.517 58 20 0 1 58 1 58 4.41e-20 81.6
MsaG044875 MtrunA17_Chr4g0044071 63.793 58 21 0 1 58 1 58 7.43e-20 81.3
MsaG044875 MtrunA17_Chr3g0089141 39.456 147 61 5 3 148 10 129 1.38e-19 83.6
MsaG044875 MtrunA17_Chr1g0208561 53.731 67 31 0 3 69 10 76 2.04e-19 82.8
MsaG044875 MtrunA17_Chr2g0325971 53.731 67 31 0 3 69 10 76 2.13e-19 82.8
MsaG044875 MtrunA17_Chr1g0208581 53.731 67 31 0 3 69 10 76 3.62e-19 82.4
MsaG044875 MtrunA17_Chr2g0292791 52.055 73 35 0 3 75 10 82 4.85e-19 82.0
MsaG044875 MtrunA17_Chr3g0099411 50.685 73 36 0 3 75 10 82 6.56e-19 81.3
MsaG044875 MtrunA17_Chr8g0355091 44.211 95 53 0 3 97 10 104 7.72e-19 81.6
MsaG044875 MtrunA17_Chr1g0206721 35.862 145 73 5 3 131 10 150 1.03e-18 81.3
MsaG044875 MtrunA17_Chr1g0187361 50.685 73 36 0 3 75 10 82 1.32e-18 80.9
MsaG044875 MtrunA17_Chr3g0099421 52.055 73 35 0 3 75 35 107 2.04e-18 80.9
MsaG044875 MtrunA17_Chr1g0206701 50.685 73 36 0 3 75 10 82 2.48e-18 80.1
MsaG044875 MtrunA17_Chr1g0188671 50.685 73 36 0 3 75 48 120 4.66e-18 80.1
MsaG044875 MtrunA17_Chr1g0149391 50.000 72 36 0 3 74 10 81 1.14e-17 78.6
MsaG044875 MtrunA17_Chr2g0317451 52.239 67 32 0 3 69 10 76 1.43e-17 78.2
MsaG044875 MtrunA17_Chr2g0317481 52.239 67 32 0 3 69 10 76 1.48e-17 78.2
MsaG044875 MtrunA17_Chr8g0379021 33.750 160 97 3 3 162 13 163 2.23e-17 76.3
MsaG044875 MtrunA17_Chr5g0419601 53.731 67 31 0 3 69 10 76 2.32e-17 77.8
MsaG044875 MtrunA17_Chr3g0089151 38.462 117 70 1 2 116 7 123 2.93e-17 75.1
MsaG044875 MtrunA17_Chr1g0206991 47.887 71 37 0 3 73 10 80 7.15e-17 75.1
MsaG044875 MtrunA17_Chr4g0018951 39.831 118 66 2 15 127 25 142 8.82e-17 74.7
MsaG044875 MtrunA17_Chr3g0119901 36.290 124 59 4 3 116 10 123 9.01e-17 75.5
MsaG044875 MtrunA17_Chr5g0422941 47.945 73 38 0 3 75 10 82 9.09e-17 75.9
MsaG044875 MtrunA17_Chr5g0422421 49.296 71 36 0 3 73 10 80 1.58e-16 75.5
MsaG044875 MtrunA17_Chr8g0357771 46.377 69 37 0 1 69 1 69 5.39e-16 72.8
MsaG044875 MtrunA17_Chr8g0376821 46.377 69 37 0 1 69 1 69 5.61e-16 72.8
MsaG044875 MtrunA17_Chr2g0333981 33.939 165 90 4 1 149 11 172 6.19e-16 72.4
MsaG044875 MtrunA17_Chr1g0175611 46.377 69 37 0 1 69 1 69 7.56e-16 72.0
MsaG044875 MtrunA17_Chr3g0085241 37.097 124 58 4 3 116 42 155 1.02e-15 73.6
MsaG044875 MtrunA17_Chr2g0300421 49.254 67 34 0 3 69 10 76 1.05e-15 72.0
MsaG044875 MtrunA17_Chr1g0180591 44.928 69 38 0 1 69 1 69 1.39e-15 71.6
MsaG044875 MtrunA17_Chr1g0169761 46.377 69 37 0 1 69 1 69 1.56e-15 71.6
MsaG044875 MtrunA17_Chr4g0052081 44.928 69 38 0 1 69 1 69 2.08e-15 71.2
MsaG044875 MtrunA17_Chr4g0074101 43.038 79 45 0 1 79 1 79 2.72e-15 71.2
MsaG044875 MtrunA17_Chr1g0187351 52.542 59 28 0 11 69 1 59 3.45e-15 67.8
MsaG044875 MtrunA17_Chr1g0175601 46.377 69 37 0 1 69 1 69 4.42e-15 70.5
MsaG044875 MtrunA17_Chr3g0111841 57.627 59 24 1 8 66 2 59 5.04e-15 67.4
MsaG044875 MtrunA17_Chr1g0206691 49.231 65 33 0 11 75 1 65 5.35e-15 70.9
MsaG044875 MtrunA17_Chr2g0300441 45.070 71 39 0 5 75 12 82 1.41e-14 70.1
MsaG044875 MtrunA17_Chr4g0052061 42.029 69 40 0 1 69 1 69 6.38e-14 66.6
MsaG044875 MtrunA17_Chr4g0060841 46.479 71 36 1 1 69 1 71 2.75e-13 67.8
MsaG044875 MtrunA17_Chr5g0417661 52.830 53 25 0 1 53 56 108 3.42e-13 63.9
MsaG044875 MtrunA17_Chr8g0356071 40.580 69 41 0 1 69 1 69 6.54e-13 64.3
MsaG044875 MtrunA17_Chr7g0238991 41.892 74 42 1 2 74 20 93 2.98e-11 60.8
MsaG044875 MtrunA17_Chr4g0071601 37.705 122 61 4 15 124 25 143 3.94e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG044875 AT4G22950.3 58.768 211 84 3 1 209 1 210 2.83e-73 221
MsaG044875 AT4G22950.1 58.768 211 84 3 1 209 1 210 2.83e-73 221
MsaG044875 AT4G22950.2 65.269 167 57 1 1 167 1 166 3.91e-69 209
MsaG044875 AT2G45660.1 57.619 210 84 4 1 206 1 209 8.36e-69 209
MsaG044875 AT2G45660.2 64.968 157 53 2 1 156 1 156 4.99e-64 196
MsaG044875 AT4G11880.4 56.338 213 88 4 1 209 1 212 6.74e-64 197
MsaG044875 AT4G11880.1 56.338 213 88 4 1 209 1 212 6.74e-64 197
MsaG044875 AT5G62165.3 51.923 208 100 0 1 208 1 208 2.81e-62 193
MsaG044875 AT5G62165.1 51.923 208 100 0 1 208 1 208 2.81e-62 193
MsaG044875 AT5G62165.2 51.923 208 100 0 1 208 1 208 2.81e-62 193
MsaG044875 AT4G11880.2 64.331 157 54 2 1 156 1 156 5.95e-62 191
MsaG044875 AT4G11880.3 64.331 157 54 2 1 156 1 156 5.95e-62 191
MsaG044875 AT5G62165.17 57.051 156 67 0 1 156 1 156 7.80e-55 172
MsaG044875 AT5G62165.12 57.051 156 67 0 1 156 1 156 7.80e-55 172
MsaG044875 AT5G62165.11 57.051 156 67 0 1 156 1 156 7.80e-55 172
MsaG044875 AT5G51860.1 46.190 210 112 1 1 209 1 210 5.24e-54 172
MsaG044875 AT5G51870.1 46.445 211 108 2 1 210 1 207 2.85e-53 170
MsaG044875 AT5G62165.10 47.596 208 95 1 1 208 1 194 5.08e-53 169
MsaG044875 AT5G62165.4 47.596 208 95 1 1 208 1 194 5.08e-53 169
MsaG044875 AT5G51860.2 45.714 210 104 2 1 209 1 201 9.95e-53 168
MsaG044875 AT5G62165.6 54.667 150 68 0 1 150 1 150 8.16e-51 162
MsaG044875 AT5G62165.9 54.667 150 68 0 1 150 1 150 8.16e-51 162
MsaG044875 AT5G62165.7 54.667 150 68 0 1 150 1 150 8.16e-51 162
MsaG044875 AT5G62165.8 54.667 150 68 0 1 150 1 150 8.16e-51 162
MsaG044875 AT5G62165.13 54.667 150 68 0 1 150 1 150 8.16e-51 162
MsaG044875 AT5G51870.4 43.172 227 104 3 1 210 1 219 8.17e-51 164
MsaG044875 AT5G51870.3 43.172 227 104 3 1 210 11 229 8.73e-51 164
MsaG044875 AT2G45650.1 52.695 167 78 1 1 167 1 166 8.13e-49 160
MsaG044875 AT4G09960.6 49.091 165 82 2 1 164 2 165 2.07e-46 153
MsaG044875 AT4G09960.1 49.091 165 82 2 1 164 1 164 2.67e-46 153
MsaG044875 AT4G09960.5 49.091 165 82 2 1 164 11 174 2.73e-46 153
MsaG044875 AT4G09960.3 49.091 165 82 2 1 164 27 190 7.43e-46 152
MsaG044875 AT4G09960.4 49.390 164 79 3 1 163 96 256 3.51e-45 153
MsaG044875 AT4G18960.1 46.061 165 89 0 3 167 19 183 6.78e-45 150
MsaG044875 AT2G03710.3 46.369 179 87 3 1 174 1 175 1.17e-44 147
MsaG044875 AT3G58780.5 43.094 181 101 1 3 183 24 202 3.42e-44 148
MsaG044875 AT3G58780.1 43.094 181 101 1 3 183 18 196 4.06e-44 148
MsaG044875 AT1G24260.1 48.837 172 81 3 1 167 1 170 4.29e-44 148
MsaG044875 AT4G09960.2 51.049 143 68 2 1 142 1 142 7.27e-44 146
MsaG044875 AT1G24260.2 47.458 177 77 3 1 167 1 171 1.11e-43 147
MsaG044875 AT1G26310.1 46.465 198 101 2 1 194 1 197 1.32e-43 147
MsaG044875 AT1G69120.2 48.851 174 82 3 1 170 1 171 6.76e-43 144
MsaG044875 AT2G03710.2 47.093 172 82 3 1 167 1 168 2.15e-42 144
MsaG044875 AT2G03710.1 47.093 172 82 3 1 167 1 168 2.23e-42 144
MsaG044875 AT5G15800.1 47.429 175 79 3 1 168 1 169 2.48e-42 143
MsaG044875 AT1G69120.1 48.851 174 82 3 1 170 1 171 3.62e-42 143
MsaG044875 AT3G57230.1 44.385 187 97 2 1 187 1 180 4.01e-42 142
MsaG044875 AT3G57230.4 44.385 187 97 2 1 187 1 180 4.01e-42 142
MsaG044875 AT2G42830.1 43.636 165 93 0 3 167 18 182 4.37e-42 142
MsaG044875 AT5G15800.2 47.701 174 78 3 1 167 1 168 6.30e-42 142
MsaG044875 AT3G61120.1 50.299 167 81 2 1 167 1 165 1.75e-41 141
MsaG044875 AT2G42830.2 44.156 154 86 0 3 156 18 171 2.94e-41 140
MsaG044875 AT3G02310.2 47.126 174 79 3 1 167 1 168 3.31e-41 139
MsaG044875 AT3G02310.1 47.126 174 79 3 1 167 1 168 6.36e-41 140
MsaG044875 AT5G60910.1 45.977 174 87 3 1 170 1 171 1.17e-40 139
MsaG044875 AT5G51870.2 49.650 143 71 1 1 142 1 143 2.43e-40 135
MsaG044875 AT5G51870.5 49.650 143 71 1 1 142 24 166 7.93e-40 135
MsaG044875 AT3G58780.4 46.429 140 75 0 3 142 18 157 2.24e-39 137
MsaG044875 AT1G24260.3 46.386 166 73 3 1 156 1 160 2.30e-39 135
MsaG044875 AT3G58780.2 41.436 181 97 2 3 183 18 189 3.71e-39 135
MsaG044875 AT3G58780.3 37.864 206 101 2 3 183 18 221 1.64e-38 134
MsaG044875 AT4G37940.1 41.808 177 90 2 1 171 1 170 4.33e-38 132
MsaG044875 AT3G57230.2 47.260 146 76 1 1 146 1 145 1.74e-37 127
MsaG044875 AT3G57390.3 39.336 211 108 3 1 200 1 202 6.00e-37 129
MsaG044875 AT5G23260.2 42.308 182 78 4 1 169 1 168 1.26e-36 129
MsaG044875 AT3G57390.1 43.646 181 87 2 1 170 1 177 1.86e-36 128
MsaG044875 AT5G23260.4 42.308 182 78 4 1 169 17 184 1.86e-36 129
MsaG044875 AT4G37940.4 36.715 207 112 3 1 201 1 194 1.21e-35 125
MsaG044875 AT5G13790.2 47.126 174 80 4 1 170 1 166 1.57e-35 126
MsaG044875 AT2G22540.3 43.017 179 84 3 1 170 1 170 2.74e-35 125
MsaG044875 AT2G22540.1 43.017 179 84 3 1 170 1 170 2.74e-35 125
MsaG044875 AT2G22630.1 42.197 173 95 3 1 171 1 170 2.94e-34 122
MsaG044875 AT2G22630.2 42.197 173 95 3 1 171 1 170 2.94e-34 122
MsaG044875 AT3G30260.1 46.753 154 75 3 1 150 1 151 7.59e-34 121
MsaG044875 AT4G37940.3 44.295 149 70 2 1 143 1 142 8.74e-34 119
MsaG044875 AT5G10140.4 46.497 157 75 3 1 156 1 149 1.39e-33 119
MsaG044875 AT5G13790.1 45.977 174 79 4 1 170 1 163 3.51e-33 120
MsaG044875 AT4G24540.1 42.941 170 91 3 1 167 1 167 1.32e-32 117
MsaG044875 AT5G23260.1 41.209 182 75 5 1 169 17 179 1.50e-32 118
MsaG044875 AT2G14210.1 41.111 180 80 5 1 167 1 167 2.75e-32 117
MsaG044875 AT5G65060.1 40.678 177 88 4 1 172 1 165 3.17e-32 115
MsaG044875 AT2G14210.2 42.442 172 89 4 1 167 1 167 3.24e-32 117
MsaG044875 AT5G10140.2 46.286 175 85 3 1 174 1 167 3.65e-32 115
MsaG044875 AT5G62165.14 60.440 91 36 0 1 91 1 91 4.98e-32 112
MsaG044875 AT5G10140.3 46.552 174 84 3 1 173 1 166 1.01e-31 114
MsaG044875 AT5G10140.1 44.149 188 94 4 1 187 1 178 2.23e-31 114
MsaG044875 AT5G65060.3 40.341 176 88 4 1 171 1 164 3.50e-31 113
MsaG044875 AT5G65050.3 39.884 173 95 3 1 172 1 165 8.09e-31 112
MsaG044875 AT5G23260.3 42.857 161 65 4 1 148 1 147 1.28e-30 113
MsaG044875 AT5G65070.1 40.782 179 81 4 1 170 1 163 4.77e-30 110
MsaG044875 AT2G22540.2 40.223 179 84 4 1 170 1 165 5.13e-30 111
MsaG044875 AT5G65050.2 39.535 172 95 3 1 171 1 164 5.23e-30 109
MsaG044875 AT3G54340.1 41.975 162 83 3 1 158 1 155 5.67e-30 111
MsaG044875 AT1G77080.4 45.763 177 79 4 1 172 1 165 1.02e-29 109
MsaG044875 AT5G65060.2 39.429 175 82 4 1 172 1 154 2.30e-29 108
MsaG044875 AT1G77080.11 44.944 178 81 4 1 173 1 166 5.03e-29 107
MsaG044875 AT5G65070.2 40.609 197 87 6 1 170 1 194 1.15e-28 107
MsaG044875 AT1G77080.5 44.509 173 87 3 1 172 1 165 1.34e-28 105
MsaG044875 AT5G20240.1 38.728 173 93 5 1 170 1 163 4.89e-28 105
MsaG044875 AT5G65050.5 38.728 173 86 4 1 172 1 154 8.39e-28 104
MsaG044875 AT1G77080.2 45.665 173 81 3 1 172 1 161 3.68e-27 102
MsaG044875 AT5G20240.2 41.549 142 74 3 1 139 1 136 4.42e-27 101
MsaG044875 AT1G77080.8 43.655 197 81 8 1 172 1 192 1.09e-26 102
MsaG044875 AT5G65050.1 36.313 179 101 4 1 174 1 171 5.87e-26 99.4
MsaG044875 AT5G65080.3 39.375 160 82 3 1 156 8 156 6.74e-26 99.4
MsaG044875 AT5G65070.3 38.071 197 93 5 1 170 1 195 2.32e-25 99.0
MsaG044875 AT5G65080.2 41.290 155 83 2 1 155 8 154 2.47e-25 98.2
MsaG044875 AT5G65070.4 42.177 147 76 3 1 146 1 139 8.32e-25 95.5
MsaG044875 AT1G71692.1 40.000 175 97 4 1 167 1 175 1.28e-24 96.7
MsaG044875 AT5G65070.5 39.344 183 81 6 1 156 1 180 3.45e-24 95.5
MsaG044875 AT1G77080.12 44.586 157 74 3 1 156 1 145 6.27e-22 87.8
MsaG044875 AT1G31140.1 38.182 165 94 3 1 158 1 164 1.18e-21 89.0
MsaG044875 AT1G31140.2 40.351 171 84 6 1 158 1 166 1.37e-21 89.0
MsaG044875 AT5G62165.15 38.854 157 87 2 55 208 5 155 3.82e-21 86.3
MsaG044875 AT5G62165.5 38.854 157 87 2 55 208 5 155 3.82e-21 86.3
MsaG044875 AT1G77980.1 57.143 70 29 1 1 69 1 70 2.66e-19 84.7
MsaG044875 AT1G22130.1 57.143 70 29 1 1 69 1 70 4.58e-19 84.0
MsaG044875 AT4G36590.1 46.809 94 48 1 3 96 8 99 2.68e-18 80.9
MsaG044875 AT1G01530.1 50.704 71 35 0 3 73 8 78 2.31e-17 78.2
MsaG044875 AT2G34440.1 32.121 165 87 5 1 145 1 160 2.68e-17 76.3
MsaG044875 AT1G77950.3 51.429 70 33 1 1 69 1 70 1.47e-16 76.3
MsaG044875 AT1G77950.2 51.429 70 33 1 1 69 1 70 1.47e-16 76.3
MsaG044875 AT1G77950.1 51.429 70 33 1 1 69 1 70 1.47e-16 76.3
MsaG044875 AT1G77950.4 51.429 70 33 1 1 69 1 70 1.47e-16 76.3
MsaG044875 AT4G37435.1 51.515 66 32 0 1 66 1 66 1.73e-16 74.7
MsaG044875 AT2G24840.1 38.889 108 66 0 3 110 64 171 4.77e-16 75.1
MsaG044875 AT5G60440.1 50.746 67 33 0 3 69 8 74 5.11e-16 75.5
MsaG044875 AT3G04100.1 35.849 106 59 2 5 105 17 118 1.45e-15 72.8
MsaG044875 AT1G18750.4 49.296 71 34 1 1 69 1 71 1.89e-15 74.3
MsaG044875 AT1G18750.1 49.296 71 34 1 1 69 1 71 2.10e-15 74.3
MsaG044875 AT1G18750.3 49.296 71 34 1 1 69 1 71 2.42e-15 74.3
MsaG044875 AT1G65360.1 45.070 71 39 0 3 73 8 78 5.66e-15 71.2
MsaG044875 AT3G66656.1 45.714 70 38 0 1 70 1 70 5.81e-15 70.5
MsaG044875 AT1G28460.1 49.231 65 33 0 5 69 11 75 2.89e-14 68.6
MsaG044875 AT1G29962.1 47.692 65 34 0 5 69 11 75 4.47e-14 68.2
MsaG044875 AT1G69540.1 30.270 185 91 5 1 153 1 179 1.09e-13 69.3
MsaG044875 AT1G69540.2 30.270 185 91 5 1 153 1 179 1.31e-13 68.9
MsaG044875 AT1G72350.1 43.750 80 43 1 3 82 44 121 2.33e-13 67.0
MsaG044875 AT1G28450.1 46.154 65 35 0 5 69 11 75 1.50e-12 63.9
MsaG044875 AT2G03060.3 30.337 178 92 6 1 149 1 175 1.85e-12 65.9
MsaG044875 AT2G03060.7 30.337 178 92 6 1 149 1 175 1.85e-12 65.9
MsaG044875 AT2G03060.1 30.337 178 92 6 1 149 1 175 1.85e-12 65.9
MsaG044875 AT1G47760.1 44.286 70 39 0 1 70 1 70 1.91e-12 63.5
MsaG044875 AT2G03060.2 30.337 178 92 6 1 149 1 175 2.18e-12 65.5
MsaG044875 AT5G62165.16 33.121 157 82 3 55 208 5 141 6.41e-12 61.2

Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATAAACAACAAGATA+TGG 0.284050 8:-65974405 MsaT044875.1:CDS
GAAGTTGTTGGGAGATGAAT+TGG 0.314977 8:-65974994 MsaT044875.1:CDS
AAGAAATGGACTGCTTAAAA+AGG 0.324915 8:-65983344 MsaT044875.1:CDS
AACGTAGCTTAAGCAAAATA+AGG 0.327292 8:-65974926 MsaT044875.1:CDS
CATGTATTGTAGGAAGTTGT+TGG 0.371428 8:-65975006 MsaT044875.1:intron
TCATTGTTGTAGTGTGGAAT+TGG 0.395925 8:-65974440 MsaT044875.1:intron
ACTTTCTCAAAGAGAAGAAA+TGG 0.422858 8:-65983358 MsaT044875.1:CDS
GTGGAGACAGAATTGTTCAT+AGG 0.429449 8:-65974350 MsaT044875.1:CDS
AAATTAAACATACCTTGAAC+TGG 0.446342 8:+65983243 None:intergenic
ATGTATTGTAGGAAGTTGTT+GGG 0.449480 8:-65975005 MsaT044875.1:intron
TCTATGAGTTCTCCAGTTCA+AGG 0.460917 8:-65983255 MsaT044875.1:intron
GAAACAGTGGAACGCTATCA+AGG 0.469619 8:-65978906 MsaT044875.1:CDS
ACGTAGCTTAAGCAAAATAA+GGG 0.475882 8:-65974925 MsaT044875.1:CDS
TATAGACACAACAAAGAAGT+TGG 0.480797 8:-65975156 MsaT044875.1:CDS
CTCATCGTCTTCTCTACCAC+TGG 0.481417 8:-65983283 MsaT044875.1:CDS
TCAAGGGAAAGTTAAGGAAC+TGG 0.481701 8:-65978889 MsaT044875.1:CDS
AAGCAAAATAAGGGCAAGAA+AGG 0.493681 8:-65974916 MsaT044875.1:intron
AAGTTGTTGGGAGATGAATT+GGG 0.494375 8:-65974993 MsaT044875.1:CDS
AATTGAAAAGCTAAAAGAAA+AGG 0.505653 8:-65974786 MsaT044875.1:intron
AAGTGTGCGTGACGAGGAGG+TGG 0.511781 8:-65974369 MsaT044875.1:CDS
AAATAAACGCTTATGCAAGC+AGG 0.536574 8:-65974624 MsaT044875.1:intron
TGTTCAGAATCATTTGCTGA+AGG 0.553995 8:-65974813 MsaT044875.1:intron
AACACCTAGAGCTTTCCAAA+AGG 0.559845 8:-65975133 MsaT044875.1:intron
TGGAGACAGAATTGTTCATA+GGG 0.567939 8:-65974349 MsaT044875.1:CDS
ACGCTATCAAGGGAAAGTTA+AGG 0.569325 8:-65978895 MsaT044875.1:CDS
AACAGAAAGTGTGCGTGACG+AGG 0.604026 8:-65974375 MsaT044875.1:CDS
GAACTGGCTCTCAGCACCAA+AGG 0.605749 8:-65978873 MsaT044875.1:CDS
ACAAAGCACTGAAAGTTCAA+AGG 0.613392 8:+65983321 None:intergenic
AAACAGTGGAACGCTATCAA+GGG 0.614255 8:-65978905 MsaT044875.1:CDS
TTATTCATCAAAATGGTGAG+AGG 0.636658 8:-65983427 None:intergenic
CTTCAGTATAAGCGAAACAG+TGG 0.637167 8:-65978919 MsaT044875.1:intron
AGAAAGTGTGCGTGACGAGG+AGG 0.638880 8:-65974372 MsaT044875.1:CDS
TCATCGTCTTCTCTACCACT+GGG 0.652904 8:-65983282 MsaT044875.1:CDS
AGGAATCCAAGAAAATACAC+AGG 0.687928 8:-65978853 MsaT044875.1:intron
GAACTCATAGAGTTTCCCAG+TGG 0.782754 8:+65983267 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 65974325 65983437 65974325 ID=MsaG044875
Chr8 mRNA 65974325 65983437 65974325 ID=MsaT044875.1;Parent=MsaG044875
Chr8 exon 65974325 65974450 65974325 ID=MsaT044875.1.exon7;Parent=MsaT044875.1
Chr8 CDS 65974325 65974450 65974325 ID=cds.MsaT044875.1;Parent=MsaT044875.1
Chr8 exon 65974625 65974666 65974625 ID=MsaT044875.1.exon6;Parent=MsaT044875.1
Chr8 CDS 65974625 65974666 65974625 ID=cds.MsaT044875.1;Parent=MsaT044875.1
Chr8 exon 65974787 65974828 65974787 ID=MsaT044875.1.exon5;Parent=MsaT044875.1
Chr8 CDS 65974787 65974828 65974787 ID=cds.MsaT044875.1;Parent=MsaT044875.1
Chr8 exon 65974917 65975016 65974917 ID=MsaT044875.1.exon4;Parent=MsaT044875.1
Chr8 CDS 65974917 65975016 65974917 ID=cds.MsaT044875.1;Parent=MsaT044875.1
Chr8 exon 65975134 65975195 65975134 ID=MsaT044875.1.exon3;Parent=MsaT044875.1
Chr8 CDS 65975134 65975195 65975134 ID=cds.MsaT044875.1;Parent=MsaT044875.1
Chr8 exon 65978854 65978935 65978854 ID=MsaT044875.1.exon2;Parent=MsaT044875.1
Chr8 CDS 65978854 65978935 65978854 ID=cds.MsaT044875.1;Parent=MsaT044875.1
Chr8 exon 65983256 65983437 65983256 ID=MsaT044875.1.exon1;Parent=MsaT044875.1
Chr8 CDS 65983256 65983437 65983256 ID=cds.MsaT044875.1;Parent=MsaT044875.1
Gene Sequence

>MsaT044875.1

ATGGTGAGAGGAAAAACTCAAATGAAACGCATCGAAAATGAGTCAAACAGACAAGTAACTTTCTCAAAGAGAAGAAATGGACTGCTTAAAAAGGCCTTTGAACTTTCAGTGCTTTGTGATGCTGAAGTAGCACTCATCGTCTTCTCTACCACTGGGAAACTCTATGAGTTCTCCAGTTCAAGTATAAGCGAAACAGTGGAACGCTATCAAGGGAAAGTTAAGGAACTGGCTCTCAGCACCAAAGGAATCCAAGAAAATACACAGCATCTAATTGAATGTGATATAGACACAACAAAGAAGTTGGAACACCTAGAGCTTTCCAAAAGGAAGTTGTTGGGAGATGAATTGGGTTCATGTGCTATTGACGAATTACAACAGATTGAAAATCAACTCGAACGTAGCTTAAGCAAAATAAGGGCAAGAAAGAATCATTTGCTGAAGGAGCAAATTGAAAAGCTAAAAGAAAAGGAAAGGTTGCTTCTTGAAGAAAATAAACGCTTATGCAAGCAGTGTGGAATTGGACAAAATGATTGTTTAAATAAACAACAAGATATGGAACTCATAACAGAAAGTGTGCGTGACGAGGAGGTGGAGACAGAATTGTTCATAGGGCGACCAAAGAAAAGAATGAATTGA
Protein sequence

>MsaT044875.1

MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSSSISETVERYQGKVKELALSTKGIQENTQHLIECDIDTTKKLEHLELSKRKLLGDELGSCAIDELQQIENQLERSLSKIRARKNHLLKEQIEKLKEKERLLLEENKRLCKQCGIGQNDCLNKQQDMELITESVRDEEVETELFIGRPKKRMN*