AlfalfaGEDB | MsaG044959

M. sativa ssp. caerulea / MsaG044959

KEGG: K08287
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044959	XP_013457727.1	99.766	428	1	0	1	428	1	428	0.0	890

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044959	sp\|P51567\|AFC2_ARATH	84.309	427	65	2	1	426	1	426	0.0	758

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044959	tr\|A0A072URR8\|A0A072URR8_MEDTR	99.766	428	1	0	1	428	1	428	0.0	890

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG044959	MtrunA17_Chr4g0058241	99.766	428	1	0	1	428	1	428	0.0	890
MsaG044959	MtrunA17_Chr3g0116701	85.647	425	57	1	1	425	1	421	0.0	766
MsaG044959	MtrunA17_Chr3g0123491	73.430	414	104	4	14	423	9	420	0.0	618
MsaG044959	MtrunA17_Chr3g0139371	61.298	416	125	6	17	423	10	398	2.21e-180	508
MsaG044959	MtrunA17_Chr8g0369241	30.137	365	194	8	97	422	138	480	8.82e-46	169
MsaG044959	MtrunA17_Chr5g0437131	30.120	332	199	6	94	420	399	702	3.44e-43	161
MsaG044959	MtrunA17_Chr6g0480541	31.304	345	204	6	81	420	881	1197	3.95e-43	162
MsaG044959	MtrunA17_Chr1g0210061	29.469	414	236	13	31	424	549	926	1.23e-38	148
MsaG044959	MtrunA17_Chr8g0370321	29.657	408	209	13	82	426	21	413	1.02e-37	142
MsaG044959	MtrunA17_Chr5g0407121	28.180	401	216	11	82	420	21	411	1.36e-36	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG044959	AT4G24740.1	84.309	427	65	2	1	426	1	426	758
MsaG044959	AT4G24740.7	84.319	389	60	1	38	426	1	388	697
MsaG044959	AT3G53570.1	69.725	436	114	4	1	425	17	445	630
MsaG044959	AT3G53570.4	69.725	436	114	4	1	425	17	445	630
MsaG044959	AT3G53570.2	69.725	436	114	4	1	425	17	445	630
MsaG044959	AT3G53570.3	69.725	436	114	4	1	425	3	431	629
MsaG044959	AT3G53570.5	69.725	436	114	4	1	425	3	431	629
MsaG044959	AT4G24740.3	84.527	349	52	2	1	348	1	348	621
MsaG044959	AT4G24740.6	86.997	323	42	0	104	426	1	323	598
MsaG044959	AT4G24740.9	86.997	323	42	0	104	426	1	323	598

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Find 106 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACCTTTGGGGTTTC+AGG	0.145290	8:-66947525	None:intergenic
AAAATGGGAGAAGGAACTTT+TGG	0.291357	8:+66948918	MsaT044959.1:CDS
AAACTACCTTTGGGGTTTCA+GGG	0.414780	8:-66947524	None:intergenic
AACATGATATAGGTGGCAAT+CGG	0.531768	8:+66949063	MsaT044959.1:CDS
AACCTTGATAGCACTAGACT+TGG	0.516162	8:-66949987	None:intergenic
AATCTCACGGACAAGATCAA+TGG	0.477143	8:-66949386	None:intergenic
AATGAAGCTCCCTAGACTAC+AGG	0.524672	8:+66950616	MsaT044959.1:CDS
ACAGTTGTCTGCCAATCTCA+CGG	0.612503	8:-66949399	None:intergenic
ACCAAGGAAGCGAGCGAGGT+TGG	0.473712	8:+66947491	MsaT044959.1:CDS
ACCAAGTACCCTCTCCATCA+TGG	0.567162	8:-66950393	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	66947441	66950875	66947441	ID=MsaG044959
Chr8	mRNA	66947441	66950875	66947441	ID=MsaT044959.1;Parent=MsaG044959
Chr8	exon	66947441	66947539	66947441	ID=MsaT044959.1.exon1;Parent=MsaT044959.1
Chr8	CDS	66947441	66947539	66947441	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66948342	66948534	66948342	ID=MsaT044959.1.exon2;Parent=MsaT044959.1
Chr8	CDS	66948342	66948534	66948342	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66948904	66949084	66948904	ID=MsaT044959.1.exon3;Parent=MsaT044959.1
Chr8	CDS	66948904	66949084	66948904	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66949180	66949228	66949180	ID=MsaT044959.1.exon4;Parent=MsaT044959.1
Chr8	CDS	66949180	66949228	66949180	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66949322	66949436	66949322	ID=MsaT044959.1.exon5;Parent=MsaT044959.1
Chr8	CDS	66949322	66949436	66949322	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66949624	66949715	66949624	ID=MsaT044959.1.exon6;Parent=MsaT044959.1
Chr8	CDS	66949624	66949715	66949624	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66949947	66950097	66949947	ID=MsaT044959.1.exon7;Parent=MsaT044959.1
Chr8	CDS	66949947	66950097	66949947	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66950209	66950273	66950209	ID=MsaT044959.1.exon8;Parent=MsaT044959.1
Chr8	CDS	66950209	66950273	66950209	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66950350	66950447	66950350	ID=MsaT044959.1.exon9;Parent=MsaT044959.1
Chr8	CDS	66950350	66950447	66950350	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66950535	66950637	66950535	ID=MsaT044959.1.exon10;Parent=MsaT044959.1
Chr8	CDS	66950535	66950637	66950535	ID=cds.MsaT044959.1;Parent=MsaT044959.1
Chr8	exon	66950735	66950875	66950735	ID=MsaT044959.1.exon11;Parent=MsaT044959.1
Chr8	CDS	66950735	66950875	66950735	ID=cds.MsaT044959.1;Parent=MsaT044959.1

Gene Sequence

>MsaT044959.1

ATGGAGATGGAACGCGTCTTCGAATTTCCCCACACTCACATGGATCGTCGACCAAGGAAGCGAGCGAGGTTGGGTTGGGATGTCCCTGAAACCCCAAAGGCTCAGGTAGAATTGTTTTTTGGACAAGAGCTTGGGAATATTTCAAGCTATGCTCCTTCAGGGGTTCCCTCGGAACACACCACTAGTTCTCTATCTGTTAAGGGTGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGCCATTACACTTTTGCTGTTGGAGAAAATTTAACTTCCCGCTATAAGATACACAGCAAAATGGGAGAAGGAACTTTTGGGCAGGTATTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTCCGTGGAATAAAAAAATATCGTGAAGCAGCCATGATAGAAATTGAGATGTTGCAACAGCTTGGTAAACATGATATAGGTGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATATGTATTGTCTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTATAGCATTTATGCATGATTTGCGCATGATCCATACTGACCTAAAGCCTGAAAACATACTCCTTGTTTCACCAGACTATGTCAAAGTTCCTGACTACAAGATTTCATCTAGGTCACCAAACTCGTATTTCAAGAAAGTGCCCAAGTCTAGTGCTATCAAGGTTATTGATTTTGGAAGCACCACTTATGAGCGAGTAGATCAGAGCTACATTGTCTCAACTCGTCATTATAGAGCACCTGAAGTTATCCTTGGTCTTGGCTGGAGTCATCCATGTGATATATGGAGTGTGGGTTGTATATTGGTCGAGTTATGCACGGGCGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCACCTTGCCATGATGGAGAGGGTACTTGGTCCACTACCAATGCATATGTTGAAGAGAGTTGACCGACATGCTGAGAAGTATGTCAGAAGAGGTAAATTGGACTGGCCAGTGGGTGCAACCTCGAGGGAGAGTATTAAAGCTGTAATGAAGCTCCCTAGACTACAGAATCTAATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATACATCTGTTGCAAGGGTTACTTAGATATGACCCCTCTGAAAGAATCACAGCCAAGGAAGCCCTCAGACATTCCTTTTTTATGAGGAGATCACATTAG

Protein sequence

>MsaT044959.1

MEMERVFEFPHTHMDRRPRKRARLGWDVPETPKAQVELFFGQELGNISSYAPSGVPSEHTTSSLSVKGVARNGSPPWRDDDKDGHYTFAVGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDIGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPDYVKVPDYKISSRSPNSYFKKVPKSSAIKVIDFGSTTYERVDQSYIVSTRHYRAPEVILGLGWSHPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPMHMLKRVDRHAEKYVRRGKLDWPVGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERITAKEALRHSFFMRRSH*