AlfalfaGEDB | MsaG045023

M. sativa ssp. caerulea / MsaG045023

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045023	XP_013457778.1	96.942	1112	33	1	1	1111	1	1112	0.0	2179

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045023	sp\|F4K6B8\|RGI4_ARATH	53.555	1083	478	7	25	1100	26	1090	0.0	1129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045023	tr\|A0A072UPQ0\|A0A072UPQ0_MEDTR	96.942	1112	33	1	1	1111	1	1112	0.0	2179

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG045023	MtrunA17_Chr4g0058761	96.942	1112	33	1	1	1111	1	1112	2179
MsaG045023	MtrunA17_Chr3g0102901	56.214	1046	436	8	21	1059	33	1063	1099
MsaG045023	MtrunA17_Chr7g0237821	46.907	1083	528	10	23	1066	24	1098	983
MsaG045023	MtrunA17_Chr3g0126181	47.838	1087	530	13	8	1074	6	1075	924
MsaG045023	MtrunA17_Chr1g0201241	41.493	1058	549	15	7	1054	8	1005	729
MsaG045023	MtrunA17_Chr1g0189871	39.503	1086	605	14	1	1047	4	1076	675
MsaG045023	MtrunA17_Chr1g0169841	38.915	1069	597	15	26	1049	31	1088	671
MsaG045023	MtrunA17_Chr5g0447001	41.800	878	461	11	182	1052	95	929	639
MsaG045023	MtrunA17_Chr5g0447001	55.102	539	235	4	7	543	18	551	575
MsaG045023	MtrunA17_Chr5g0419721	40.618	906	442	16	200	1076	116	954	634

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG045023	AT5G56040.2	53.555	1083	478	7	25	1100	26	1090	1129
MsaG045023	AT4G26540.1	54.394	1081	474	6	25	1099	23	1090	1105
MsaG045023	AT3G24240.1	49.804	1022	483	9	50	1053	60	1069	983
MsaG045023	AT5G56040.1	54.741	928	395	7	25	945	26	935	975
MsaG045023	AT5G48940.1	47.383	1108	544	11	3	1082	10	1106	968
MsaG045023	AT1G34110.1	45.134	1079	576	7	1	1070	1	1072	831
MsaG045023	AT1G34110.2	45.532	1063	563	7	1	1054	1	1056	829
MsaG045023	AT1G17230.2	37.963	1080	622	10	10	1051	7	1076	678
MsaG045023	AT1G17230.1	37.963	1080	622	10	10	1051	7	1076	677
MsaG045023	AT5G63930.1	38.603	1088	597	15	24	1061	24	1090	677

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Find 288 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGGGGCGGAGGGCGA+AGG	0.531862	8:+67663896	MsaT045023.1:CDS
AAACTCGTGTGGAATCTTGC+CGG	0.515822	8:-67663646	None:intergenic
AAATTTGATTCACACTTAAT+TGG	0.230238	8:-67662828	None:intergenic
AACAATTGCACTGGCGAAGG+TGG	0.546395	8:+67663870	MsaT045023.1:CDS
AAGAGTGATGTATACAGCTT+TGG	0.473993	8:+67665304	MsaT045023.1:CDS
AAGGGGAAGCTCTTCTTTCA+TGG	0.335438	8:+67661897	MsaT045023.1:CDS
AAGGTATTGTACCAGTTATA+AGG	0.397585	8:-67662915	None:intergenic
AAGGTGGTGGAAAATCGGGG+CGG	0.676895	8:+67663886	MsaT045023.1:CDS
AAGTAGTACAATTGGATCTA+AGG	0.368759	8:+67662020	MsaT045023.1:CDS
AATCCAAGAAAGTAAGATTC+CGG	0.438612	8:-67663314	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	67661809	67665774	67661809	ID=MsaG045023
Chr8	mRNA	67661809	67665774	67661809	ID=MsaT045023.1;Parent=MsaG045023
Chr8	exon	67661809	67664644	67661809	ID=MsaT045023.1.exon1;Parent=MsaT045023.1
Chr8	CDS	67661809	67664644	67661809	ID=cds.MsaT045023.1;Parent=MsaT045023.1
Chr8	exon	67665275	67665774	67665275	ID=MsaT045023.1.exon2;Parent=MsaT045023.1
Chr8	CDS	67665275	67665774	67665275	ID=cds.MsaT045023.1;Parent=MsaT045023.1

Gene Sequence

>MsaT045023.1

ATGCCTAAAAATCCATGGACCCTCTTCTTCTTATCCATTTTCCTTTTACTACCACACCATTTTTTTCTATCTATTGCTGTCAACACACAAGGGGAAGCTCTTCTTTCATGGAAGAGAACCTTGAATGGTTCCTTGGAGATATTGAGTAATTGGAACCCAATTGAAGATACACCATGTAGCTGGTTTGGAGTGAGTTGCAACATGAAGAGTGAAGTAGTACAATTGGATCTAAGGTATGTGGATTTGCTTGGAAAACTCCCAACAAATTTCACATCATTGGTATCCTTGACTAGTCTTATCTTAACGGGAACAAATCTCACTGGTTTGATCCCGAAAGAAATAGGCAATCTTGTTGAGCTCAGTTACTTGGACTTGAGTGACAATGCATTGAGCGGCGAAATCCCAAGTGAACTCTGCTACATCCCCAAACTCGAGGAACTTCATCTGAACTCAAACGAGCTCGTGGGATCAATACCAATCGCAATTGGTAACCTCACAAAATTAACAAAGTTGATCCTATATGACAATCAGCTGAGTGGCAAAATTCCGAACACAATCGGTGACATGAAGAATCTTCAAGTGATAAGAGCCGGAGGAAACAAGAATCTAGAAGGACCTATACCACAGGAAATTGGAGACTGTTCCAATTTGATCATGTTGGGTTTAGCAGAAACAAGCATCTCAGGTTTCATTCCACCAACTATTGGACTACTAAAAAAGCTTGAGACATTAGCCATTTACACTTCACTCCTCTCTGGTCAAATTCCACCTGAAATAGGTGACTGCACAAATCTTCAAAACATTTACCTTTATGAAAATTCACTCACAGGTTCCATTCCAACCAAATTAGGAAACCTTAAAAATCTCAAAAACCTGTTACTCTGGCAGAACAATTTAGTTGGCACTATTCCCCCAGAGATTGGAAACTGTTACCAATTATCAGTCATCGACGCGTCGATGAATTCAATAACAGGAAGCATTCCCAAAACCTTTGGGAATTTAACTCTGCTACAAGAACTCCAATTAAGTGTGAATCAAATTTCTGGTGAGATTCCTGCAGAATTGGGGAACTGTCAACAACTAACACACGTGGAGATTGACAACAACCTTATAACTGGTACAATACCTTCCGAATTAGGAAACCTTGGGAATCTAACATTGTTGTTTTTGTGGCATAATAGGTTACAAGGTAATATACCTTCAACTCTTTCCAATTGTCAAAACCTTGAAGCTATTGATCTGTCACAGAATTTGTTAACTGGTCCCATACCAAAGGGTATATTCCAGCTTCAAAATCTCAACAAGCTTTTGCTTCTCTCTAATAATCTCTCTGGTAAACTTCCCTCTCAGATTGGGAATTGTTCTTCTCTTATTCGCTTCCGAGCGAATAATAACAACATTACTGGTTTCATTCCATCTCAGATTGGTAATCTCAAGAATTTGAATTTCCTTGACCTAGGGAGTAATAGGATTGAAGGCATTATCCCGGAGGAAATCTCGGGTTGCCGGAATCTTACTTTCTTGGATTTGCATTCAAATTCCATCGCCGGAGCCTTGCCGGAAAGTTTAAGCCAGCTTGTTTCACTTCAATTTCTCGATTTTTCCGATAACATGATCGAAGGTGCATTGAGTCCTTCTCTCGGCTCACTCGCCGCTCTTACAAAACTTATCCTCAGGCAAAATAGAATCACCGGTGAAATTCCGATGAAACTCGGTTCATGTGAGAAGTTACAGTTACTTGATCTCAGCAGCAATCAACTCTCCGGTGAAATTCCTAGCACCATCGGAGACATTCCGGCGCTGGAAATAGCTTTAAATCTGAGCACAAACCAGCTCTCCGGCAAGATTCCACACGAGTTTTCAAGCTTAACAAAACTCGGAGTTCTTGATTTATCTCACAACATTCTCACCGGGAACCTTGATTATCTCGCCGGATTGGAAAATCTAGTGGTACTCAATATCTCATTCAACAAATTCTCCGGTCACGTTCCAAACACACCGTTCTTCGAGAAGCTTCCATTGAACGTTCTCTCAGGGAATCCTTCTCTATGCTTCTTCGGCAACAATTGCACTGGCGAAGGTGGTGGAAAATCGGGGCGGAGGGCGAAGGAAGCGCGTGTGGTGATGATTGTTCTTCTTTGCGTCGCATGCGTTTTACTCATGGCGGCGTTATACGTCGTCGTCGCAGCAAAACGACGTGGTGACCAAGAAAACGACGTGGAGCGGAAAGATAGCGACGGTGAAATGGTCCCACCTTGGGAAGTGACACTGTACCAGAAACTCGATCTGTCAATATCCGACGTGGCAAAATGTATCTCTGCTGGCAATATCGTCGGACACGGTCGATCCGGTGTCGTTTATAAAGTTACCATGCCAACAGGATTAACCATTGCAGTAAAAAAATTCCGGTCGTCGGAGAAATTCTCAGCGTCGTCATTCTCCTCAGAAATTGCAACGCTGGCAAGAATTCGACACCGGAATATTGTCCGGTTATTGGGTTGGGGTGCTAACAGGAGGACAAAGTTACTGTTCTATGATTATTTACCGAACGGTAATTTGGATGCTATGTTACATGAGGGGTGTACAGGACTAGCAGTGGAATGGGAAACACGGCTTAAGATAGCAATTGGTGTTGCTGAAGGGTTGGCTTATTTGCATCATGATTGTGTTCCTTCTATCTTGCACCGGGATGTTAAGGCGCAGAATATTTTGTTAGATGATAGATATGAAGCTTGTTTGGCTGATTTTGGGTTTGCTCGTTTCGTTGAAGAACAACCGCATGCTTCCTTTTCGGTTAATCCTCAGTTCGCAGGTTCTTACGGCTACATTGCACCCGAGTATGCTTGTATGCTTAAAATAACAGAGAAGAGTGATGTATACAGCTTTGGTGTGGTCCTACTAGAGATAATTACAGGAAAGAGACCTGTGGATCCATCATTCCCGGATGGAATTCATGTTATTCAATGGGTTAGGGAGCATTTAAAGAGCAAGAAGGACCCAATTGAGGTTCTTGATTCAAAGCTTCAAGGTCATCCAGACACACAAATACAAGAGATGTTACAAGCACTTGGTATCTCATTATTGTGTACAAGTAATCGCGCTGACGATCGACCCACCATGAAGGATGTCGCTGCATTATTGAGAGAAATTCAGCATGACCCTACATCAGGTGCTGAGCCCCACAAGCCTAAAAGATCTGAAGCTTCGTCGTATTCTTCATCTTCTGTGACCCCCGCTCAGTTATTGCTTCTGCAATCAAATACACATTCCTCATCAATTGCTTATTCTTCATCTTCAACCACAGCAGTCTACCATTCACCAAGGAACCAATCATGA

Protein sequence

>MsaT045023.1

MPKNPWTLFFLSIFLLLPHHFFLSIAVNTQGEALLSWKRTLNGSLEILSNWNPIEDTPCSWFGVSCNMKSEVVQLDLRYVDLLGKLPTNFTSLVSLTSLILTGTNLTGLIPKEIGNLVELSYLDLSDNALSGEIPSELCYIPKLEELHLNSNELVGSIPIAIGNLTKLTKLILYDNQLSGKIPNTIGDMKNLQVIRAGGNKNLEGPIPQEIGDCSNLIMLGLAETSISGFIPPTIGLLKKLETLAIYTSLLSGQIPPEIGDCTNLQNIYLYENSLTGSIPTKLGNLKNLKNLLLWQNNLVGTIPPEIGNCYQLSVIDASMNSITGSIPKTFGNLTLLQELQLSVNQISGEIPAELGNCQQLTHVEIDNNLITGTIPSELGNLGNLTLLFLWHNRLQGNIPSTLSNCQNLEAIDLSQNLLTGPIPKGIFQLQNLNKLLLLSNNLSGKLPSQIGNCSSLIRFRANNNNITGFIPSQIGNLKNLNFLDLGSNRIEGIIPEEISGCRNLTFLDLHSNSIAGALPESLSQLVSLQFLDFSDNMIEGALSPSLGSLAALTKLILRQNRITGEIPMKLGSCEKLQLLDLSSNQLSGEIPSTIGDIPALEIALNLSTNQLSGKIPHEFSSLTKLGVLDLSHNILTGNLDYLAGLENLVVLNISFNKFSGHVPNTPFFEKLPLNVLSGNPSLCFFGNNCTGEGGGKSGRRAKEARVVMIVLLCVACVLLMAALYVVVAAKRRGDQENDVERKDSDGEMVPPWEVTLYQKLDLSISDVAKCISAGNIVGHGRSGVVYKVTMPTGLTIAVKKFRSSEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDAMLHEGCTGLAVEWETRLKIAIGVAEGLAYLHHDCVPSILHRDVKAQNILLDDRYEACLADFGFARFVEEQPHASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGIHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRADDRPTMKDVAALLREIQHDPTSGAEPHKPKRSEASSYSSSSVTPAQLLLLQSNTHSSSIAYSSSSTTAVYHSPRNQS*