AlfalfaGEDB | MsaG045060

M. sativa ssp. caerulea / MsaG045060

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045060	XP_003608974.2	99.235	392	3	0	1	392	1	392	0.0	817

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045060	sp\|Q9ZQ31\|STY13_ARATH	36.455	299	170	3	70	368	111	389	5.70e-67	221

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045060	tr\|G7JPU2\|G7JPU2_MEDTR	99.235	392	3	0	1	392	1	392	0.0	817

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000011	MsaG045060	0.835086	3.752649e-56	1.260235e-53
MsaG000015	MsaG045060	0.804019	4.451818e-49	6.597542e-47
MsaG000030	MsaG045060	0.821619	6.446875e-53	1.480004e-50
MsaG000045	MsaG045060	0.828346	1.693216e-54	4.675570e-52
MsaG000070	MsaG045060	0.812417	7.365714e-51	1.334608e-48
MsaG000071	MsaG045060	0.884850	2.899367e-71	6.592019e-68
MsaG000078	MsaG045060	0.819773	1.704972e-52	3.727108e-50
MsaG000083	MsaG045060	0.848642	1.019598e-59	5.276344e-57
MsaG000110	MsaG045060	0.849503	5.892304e-60	3.140202e-57
MsaG000113	MsaG045060	0.851777	1.361090e-60	7.845018e-58

Showing 1 to 10 of 1,729 entries

Previous1 2 3 4 5…173Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045060	MtrunA17_Chr4g0059181	99.235	392	3	0	1	392	1	392	0.0	817
MsaG045060	MtrunA17_Chr3g0117811	78.866	388	56	3	5	392	2	363	0.0	642
MsaG045060	MtrunA17_Chr6g0450871	76.982	391	72	2	2	392	3	375	0.0	634
MsaG045060	MtrunA17_Chr5g0394681	63.291	395	104	3	2	392	33	390	0.0	525
MsaG045060	MtrunA17_Chr1g0205071	59.744	390	118	3	4	392	31	382	6.69e-173	487
MsaG045060	MtrunA17_Chr3g0090261	38.542	288	157	3	80	367	73	340	2.69e-72	230
MsaG045060	MtrunA17_Chr3g0117731	38.832	291	158	3	79	369	47	317	2.80e-69	222
MsaG045060	MtrunA17_Chr4g0059121	37.631	287	159	3	78	364	47	313	3.23e-69	222
MsaG045060	MtrunA17_Chr5g0406251	37.979	287	149	6	82	366	288	547	5.76e-65	217
MsaG045060	MtrunA17_Chr4g0075541	35.179	307	178	4	76	382	74	359	5.82e-65	212

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045060	AT5G50000.1	77.919	394	76	2	1	392	1	385	0.0	659
MsaG045060	AT3G01490.1	74.453	411	86	4	1	392	1	411	0.0	640
MsaG045060	AT5G50000.2	77.301	326	63	2	1	324	1	317	0.0	533
MsaG045060	AT3G22750.1	62.629	388	107	3	6	392	28	378	0.0	522
MsaG045060	AT4G14780.1	60.668	389	116	2	4	392	13	364	4.61e-179	503
MsaG045060	AT3G01490.2	70.487	349	84	4	1	330	1	349	5.42e-179	502
MsaG045060	AT3G63260.1	68.035	341	96	3	57	392	59	391	3.60e-171	483
MsaG045060	AT3G63260.2	67.033	273	77	3	57	324	59	323	3.18e-127	370
MsaG045060	AT4G31170.7	38.127	299	165	3	70	368	112	390	1.90e-73	235
MsaG045060	AT4G31170.6	38.127	299	165	3	70	368	112	390	1.90e-73	235

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 89 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTAATGAGGAAATGCT+GGG	0.659085	8:+68000622	MsaT045060.1:CDS
AAATCAACCTTTGTGACATT+GGG	0.456801	8:-67996563	None:intergenic
AAATCCTAATGATATGACCG+GGG	0.739726	8:+67999651	MsaT045060.1:CDS
AAATGTGATGTATACAGTTT+TGG	0.361310	8:+68000349	MsaT045060.1:CDS
AACCCTGCTGCTGATCAATA+GGG	0.466861	8:-68000730	None:intergenic
AAGATGAAGGAAAGCAGTGA+TGG	0.492291	8:+67995451	None:intergenic
AAGCTGAGGTTTCCTCACTG+AGG	0.692414	8:+67996495	MsaT045060.1:CDS
AAGTAATCTCTGAGAAACTT+AGG	0.484597	8:-68000417	None:intergenic
AATAGATGTAGGAGAAGTAT+TGG	0.510739	8:-67995638	None:intergenic
AATCATACCTAATAAAGAAC+AGG	0.480560	8:+67999365	MsaT045060.1:CDS

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	67995454	68000784	67995454	ID=MsaG045060
Chr8	mRNA	67995454	68000784	67995454	ID=MsaT045060.1;Parent=MsaG045060
Chr8	exon	67995454	67995796	67995454	ID=MsaT045060.1.exon1;Parent=MsaT045060.1
Chr8	CDS	67995454	67995796	67995454	ID=cds.MsaT045060.1;Parent=MsaT045060.1
Chr8	exon	67996456	67996577	67996456	ID=MsaT045060.1.exon2;Parent=MsaT045060.1
Chr8	CDS	67996456	67996577	67996456	ID=cds.MsaT045060.1;Parent=MsaT045060.1
Chr8	exon	67999247	67999443	67999247	ID=MsaT045060.1.exon3;Parent=MsaT045060.1
Chr8	CDS	67999247	67999443	67999247	ID=cds.MsaT045060.1;Parent=MsaT045060.1
Chr8	exon	67999531	67999705	67999531	ID=MsaT045060.1.exon4;Parent=MsaT045060.1
Chr8	CDS	67999531	67999705	67999531	ID=cds.MsaT045060.1;Parent=MsaT045060.1
Chr8	exon	68000322	68000456	68000322	ID=MsaT045060.1.exon5;Parent=MsaT045060.1
Chr8	CDS	68000322	68000456	68000322	ID=cds.MsaT045060.1;Parent=MsaT045060.1
Chr8	exon	68000578	68000784	68000578	ID=MsaT045060.1.exon6;Parent=MsaT045060.1
Chr8	CDS	68000578	68000784	68000578	ID=cds.MsaT045060.1;Parent=MsaT045060.1

Gene Sequence

>MsaT045060.1

ATGAAGGAAAGCAGTGATGGGTTTGTAAGAGCAGATCAGATTGATCTGAAAAGCATCGATGAACAGCTTGAAAGACATCTCAACAAGGTGTTGACTATTGATAAGAAAAAGCGCGCTGAAGAAGAAGATTCTTCTGCTGCTTCTGCTTCTGTTTTTGATCATGTTCGTGTTCACACAAGCAGTGCCAATACTTCTCCTACATCTATTAAGTTCAAAACTAACTTCAAGAAGCAAAAACAGGATTGGGAAATTGATCCTTCTAAACTTATCATCAAAAGTGTTATTGCTCGTGGCACTTTTGGCACTGTTCATCGTGGAGTTTATGATACTCAAGATGTTGCTGTTAAATTGCTTGACTGGGGTGAAGAAGGTCAAAGGACAGAAGCTGAGGTTTCCTCACTGAGGGCCGCGTTTATACAGGAAGTTGCTGTTTGGCATAAACTTGAACATCCCAATGTCACAAAGTTTATTGGAGCAACTATGGGATCTGCAGAATTGCAGATTCAAACTGATACCGGTCTAATTGGCATGCCAAGCAATATCTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGTACACTGAAATCATACCTAATAAAGAACAGGAGGAGGAAATTAGCTTTCAAGGTTGTCATCCAGCTGGTGCTTGATTTAGCAAGAGGGTTGAGTTATCTTCACTCTCAGAAGATTGTTCACAGAGACGTGAAGACAGAAAACATGCTGTTGGATAAGACCCGCACAGTTAAAATTGCTGATTTTGGGGTTGCACGAGTCGAGGCGTCAAATCCTAATGATATGACCGGGGAGACCGGAACCCTTGGTTATATGGCTCCAGAGGTTTTAAATGGAAACCCTTATAACAGGAAATGTGATGTATACAGTTTTGGTATCTGTTTATGGGAGACATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACTTCAGCTGTTGTTCGCCAGAATTTGAGACCAGAAATACCAAGATGCTGCCCAAGTTCTCTTGCAAACGTAATGAGGAAATGCTGGGATGCCAGTCCTGATAAGCGGCCAGAGATGGACGAGGTAGTTACCATGCTGGAGGCCATTGACACATCCAAAGGCGGAGGTATGATCCCTATTGATCAGCAGCAGGGTTGTTTTTGCTTCCGCAAGCATAGAGGACCATGA

Protein sequence

>MsaT045060.1

MKESSDGFVRADQIDLKSIDEQLERHLNKVLTIDKKKRAEEEDSSAASASVFDHVRVHTSSANTSPTSIKFKTNFKKQKQDWEIDPSKLIIKSVIARGTFGTVHRGVYDTQDVAVKLLDWGEEGQRTEAEVSSLRAAFIQEVAVWHKLEHPNVTKFIGATMGSAELQIQTDTGLIGMPSNICCVVVEYLAGGTLKSYLIKNRRRKLAFKVVIQLVLDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMRKCWDASPDKRPEMDEVVTMLEAIDTSKGGGMIPIDQQQGCFCFRKHRGP*