AlfalfaGEDB | MsaG045075

M. sativa ssp. caerulea / MsaG045075

KEGG: K09377
GO: -
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045075	XP_003608956.1	96.133	181	7	0	1	181	1	181	5.40e-127	364

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045075	sp\|Q94JX5\|WLIM1_ARATH	69.143	175	53	1	3	176	2	176	1.38e-89	263

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045075	tr\|G7JNV0\|G7JNV0_MEDTR	96.133	181	7	0	1	181	1	181	2.58e-127	364

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TFs/TRs:

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Gene ID	Type	Classification
MsaG045075	TF	LIM

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045075	MtrunA17_Chr4g0059371	96.133	181	7	0	1	181	1	181	4.97e-131	364
MsaG045075	MtrunA17_Chr1g0152431	67.429	175	56	1	3	176	2	176	2.34e-89	259
MsaG045075	MtrunA17_Chr3g0113051	54.945	182	77	3	3	181	2	181	3.72e-69	208
MsaG045075	MtrunA17_Chr8g0386501	50.838	179	81	2	3	181	2	173	4.86e-62	191
MsaG045075	MtrunA17_Chr8g0386501	53.521	71	33	0	2	72	93	163	5.87e-20	83.2
MsaG045075	MtrunA17_Chr8g0349391	50.279	179	76	2	3	177	2	171	4.53e-60	186
MsaG045075	MtrunA17_Chr7g0247111	49.133	173	81	2	3	173	2	169	4.97e-58	181
MsaG045075	MtrunA17_Chr7g0247111	43.038	79	45	0	4	82	99	177	1.80e-15	71.2
MsaG045075	MtrunA17_Chr7g0247111	43.056	72	41	0	103	174	3	74	3.52e-15	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045075	AT1G10200.1	69.143	175	53	1	3	176	2	176	1.40e-90	263
MsaG045075	AT3G55770.3	56.111	180	76	2	3	181	2	179	1.66e-70	212
MsaG045075	AT3G55770.5	56.111	180	76	2	3	181	2	179	1.66e-70	212
MsaG045075	AT3G55770.2	56.111	180	76	2	3	181	2	179	1.66e-70	212
MsaG045075	AT3G55770.1	56.111	180	76	2	3	181	2	179	1.66e-70	212
MsaG045075	AT2G39900.1	53.073	179	84	0	3	181	2	180	3.42e-69	209
MsaG045075	AT3G61230.1	53.179	173	78	1	1	173	1	170	6.19e-67	204
MsaG045075	AT3G61230.1	40.659	91	54	0	4	94	100	190	1.20e-17	77.4
MsaG045075	AT3G61230.1	44.444	72	40	0	103	174	4	75	6.48e-16	72.8
MsaG045075	AT2G45800.1	53.488	172	75	2	3	173	2	169	4.83e-63	194

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Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTGTACCCAATTGAAA+AGG	0.511293	8:-68137669	MsaT045075.1:intron
AATCAGTCCATCAAACTATG+TGG	0.634185	8:-68136759	MsaT045075.1:CDS
ACAGGTCCAAGCATATAACA+AGG	0.699921	8:-68137741	MsaT045075.1:intron
ACTCAGATCTTCAAACAGAA+GGG	0.607367	8:-68136701	MsaT045075.1:CDS
ACTTGCTTCAGGTGCACACA+TGG	0.555007	8:-68136791	MsaT045075.1:CDS
AGTTGAAAGATCAACTGATC+AGG	0.484362	8:-68137846	MsaT045075.1:intron
ATAAGGTTGAACAAGTCTAA+GGG	0.583079	8:-68136661	None:intergenic
ATGTGAAAAGAAAGTTTACT+GGG	0.603879	8:-68139814	MsaT045075.1:CDS
CATGTGAAAAGAAAGTTTAC+TGG	0.388914	8:-68139815	MsaT045075.1:CDS
CCATTGCAAGGGCACACTCA+AGG	0.651170	8:-68139736	MsaT045075.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	68136664	68139874	68136664	ID=MsaG045075
Chr8	mRNA	68136664	68139874	68136664	ID=MsaT045075.1;Parent=MsaG045075
Chr8	exon	68136664	68136843	68136664	ID=MsaT045075.1.exon5;Parent=MsaT045075.1
Chr8	CDS	68136664	68136843	68136664	ID=cds.MsaT045075.1;Parent=MsaT045075.1
Chr8	exon	68137670	68137759	68137670	ID=MsaT045075.1.exon4;Parent=MsaT045075.1
Chr8	CDS	68137670	68137759	68137670	ID=cds.MsaT045075.1;Parent=MsaT045075.1
Chr8	exon	68137847	68137887	68137847	ID=MsaT045075.1.exon3;Parent=MsaT045075.1
Chr8	CDS	68137847	68137887	68137847	ID=cds.MsaT045075.1;Parent=MsaT045075.1
Chr8	exon	68138006	68138102	68138006	ID=MsaT045075.1.exon2;Parent=MsaT045075.1
Chr8	CDS	68138006	68138102	68138006	ID=cds.MsaT045075.1;Parent=MsaT045075.1
Chr8	exon	68139737	68139874	68139737	ID=MsaT045075.1.exon1;Parent=MsaT045075.1
Chr8	CDS	68139737	68139874	68139737	ID=cds.MsaT045075.1;Parent=MsaT045075.1

Gene Sequence

>MsaT045075.1

ATGGCATCATTTGCAGGCACTACACAGAAATGTAATACATGTGAAAAGAAAGTTTACTGGGTGGAACAGCTCACTGCTGATAACAAAGTGTACCACAAGTCTTGCTTCAGATGCCACCATTGCAAGGGCACACTCAAGCTGAGTAACTATTGTTCTTTTGAGGGTGTTCTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGCAGTTTGGACAAAAGTTTTGAAGGTATTGCAAGAATTTATAGAGTTGAAAGATCAACTGATCAGGTCCAAGCATATAACAAGGTTTCAAGATTTTTTGCTGGAACTCAAGAAAAATGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAGAATCTTACCATAAGACTTGCTTCAGGTGCACACATGGAGGTTGCATAATCAGTCCATCAAACTATGTGGCACATGAACATCGCCTTTATTGTAGACATCACCATACTCAGATCTTCAAACAGAAGGGTAATTTCAGCCAATTTGATAAGGTTGAACAAGTCTAA

Protein sequence

>MsaT045075.1

MASFAGTTQKCNTCEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIARIYRVERSTDQVQAYNKVSRFFAGTQEKCVGCKKTVYPIEKVAVDGESYHKTCFRCTHGGCIISPSNYVAHEHRLYCRHHHTQIFKQKGNFSQFDKVEQV*