AlfalfaGEDB | MsaG045090

M. sativa ssp. caerulea / MsaG045090

KEGG: K14492
GO: GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045090	XP_024638701.1	96.262	214	3	2	1	209	1	214	7.71e-140	399

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045090	sp\|Q9SB04\|ARR5_ARATH	73.548	155	40	1	23	176	25	179	1.85e-75	228

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045090	tr\|A0A396ID94\|A0A396ID94_MEDTR	96.262	214	3	2	1	209	1	214	3.68e-140	399

TFs/TRs:

Gene ID	Type	Classification
MsaG045090	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045090	MtrunA17_Chr4g0059571	96.262	214	3	2	1	209	1	214	7.09e-144	399
MsaG045090	MtrunA17_Chr3g0118211	72.381	210	47	4	1	209	1	200	2.01e-98	284
MsaG045090	MtrunA17_Chr5g0414931	72.028	143	36	1	22	160	15	157	7.03e-65	200
MsaG045090	MtrunA17_Chr1g0170741	70.213	141	39	1	18	155	3	143	1.58e-63	195
MsaG045090	MtrunA17_Chr7g0256551	55.556	162	63	2	18	170	4	165	1.17e-56	179
MsaG045090	MtrunA17_Chr8g0352871	55.422	166	64	2	18	174	4	168	3.36e-55	173
MsaG045090	MtrunA17_Chr3g0082861	52.695	167	62	2	21	174	2	164	1.39e-51	164
MsaG045090	MtrunA17_Chr3g0128691	59.091	132	50	2	24	152	19	149	8.50e-49	156
MsaG045090	MtrunA17_Chr3g0124861	51.678	149	53	3	22	152	21	168	1.15e-44	148
MsaG045090	MtrunA17_Chr4g0021731	55.682	88	39	0	13	100	1	88	3.41e-25	94.4
MsaG045090	MtrunA17_Chr8g0345901	29.771	131	83	1	25	155	38	159	3.04e-15	73.6
MsaG045090	MtrunA17_Chr3g0123131	31.206	141	82	5	17	157	14	139	1.61e-14	71.6
MsaG045090	MtrunA17_Chr3g0127941	30.000	130	82	1	23	152	56	176	2.03e-14	71.2
MsaG045090	MtrunA17_Chr7g0275891	33.846	130	75	3	23	152	9	127	2.51e-14	70.5
MsaG045090	MtrunA17_Chr7g0275401	33.077	130	75	3	23	152	9	126	8.70e-14	68.6
MsaG045090	MtrunA17_Chr8g0376881	29.139	151	92	4	8	158	17	152	2.01e-13	68.2
MsaG045090	MtrunA17_Chr7g0276361	26.582	158	107	2	23	180	14	162	4.97e-13	67.4
MsaG045090	MtrunA17_Chr4g0030271	30.769	130	81	1	23	152	89	209	5.81e-13	67.0
MsaG045090	MtrunA17_Chr1g0149851	31.538	130	77	2	23	152	9	126	8.37e-13	66.6
MsaG045090	MtrunA17_Chr1g0149841	30.769	130	78	2	23	152	9	126	1.73e-12	65.5
MsaG045090	MtrunA17_Chr1g0181811	30.000	130	82	2	23	152	85	205	3.84e-12	64.7
MsaG045090	MtrunA17_Chr4g0061021	28.571	112	71	1	41	152	51	153	8.94e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045090	AT3G48100.1	73.548	155	40	1	23	176	25	179	1.88e-76	228
MsaG045090	AT5G62920.1	73.684	152	40	0	23	174	25	176	8.95e-74	221
MsaG045090	AT1G74890.1	72.973	148	37	2	22	166	17	164	8.52e-70	212
MsaG045090	AT1G59940.1	58.291	199	73	3	13	202	23	220	9.00e-69	210
MsaG045090	AT1G19050.1	64.671	167	46	3	3	163	2	161	1.91e-68	208
MsaG045090	AT1G10470.3	72.857	140	38	0	13	152	10	149	1.54e-67	207
MsaG045090	AT1G59940.2	58.291	199	73	3	13	202	115	312	2.22e-67	209
MsaG045090	AT1G10470.1	72.857	140	38	0	13	152	24	163	2.64e-67	207
MsaG045090	AT3G57040.2	59.333	150	51	2	18	157	4	153	2.95e-55	176
MsaG045090	AT3G57040.1	59.333	150	51	2	18	157	4	153	2.95e-55	176
MsaG045090	AT2G41310.1	60.417	144	49	1	21	156	7	150	5.25e-55	175
MsaG045090	AT2G40670.1	61.940	134	48	1	22	152	28	161	2.05e-54	171
MsaG045090	AT3G56380.1	62.121	132	49	1	22	152	19	150	5.73e-54	170
MsaG045090	AT2G40670.2	61.481	135	48	2	22	152	28	162	1.22e-52	167
MsaG045090	AT3G56380.2	61.654	133	49	2	22	152	19	151	3.68e-52	165
MsaG045090	AT1G10470.2	67.692	65	20	1	100	163	35	99	5.10e-22	89.0
MsaG045090	AT2G07440.1	64.286	56	20	0	101	156	9	64	2.45e-16	72.8
MsaG045090	AT1G67710.1	32.258	155	90	5	13	164	1	143	1.67e-15	74.7
MsaG045090	AT5G24470.1	30.075	133	84	1	23	155	50	173	2.28e-15	74.3
MsaG045090	AT5G07210.2	28.571	161	102	3	22	182	15	162	7.48e-15	72.8
MsaG045090	AT2G46790.3	28.462	130	84	1	23	152	37	157	1.54e-13	68.9
MsaG045090	AT5G60100.7	32.308	130	79	2	23	152	64	184	1.91e-13	68.6
MsaG045090	AT5G60100.6	32.308	130	79	2	23	152	64	184	1.91e-13	68.6
MsaG045090	AT5G60100.4	32.308	130	79	2	23	152	64	184	1.91e-13	68.6
MsaG045090	AT2G46790.1	28.462	130	84	1	23	152	37	157	2.13e-13	68.6
MsaG045090	AT5G60100.2	32.308	130	79	2	23	152	64	184	2.36e-13	68.6
MsaG045090	AT5G60100.5	32.308	130	79	2	23	152	64	184	3.11e-13	68.2
MsaG045090	AT5G60100.3	32.308	130	79	2	23	152	64	184	3.11e-13	68.2
MsaG045090	AT5G60100.1	32.308	130	79	2	23	152	64	184	3.11e-13	68.2
MsaG045090	AT2G25180.1	29.286	140	84	4	13	152	10	134	6.55e-13	67.4
MsaG045090	AT5G02810.1	29.231	130	83	2	23	152	78	198	1.42e-11	63.5
MsaG045090	AT3G16857.1	29.078	141	85	4	12	152	29	154	8.37e-11	61.2
MsaG045090	AT3G16857.2	29.078	141	85	4	12	152	29	154	8.51e-11	61.2

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCTCATGATGAAATCTTTC+AGG	0.203021	8:-68341825	None:intergenic
TTCACTAATTTGCAGGTGTT+TGG	0.354372	8:+68341747	MsaT045090.1:intron
TTGATGGAGGAATCACCTTC+AGG	0.429557	8:+68340183	MsaT045090.1:CDS
ATGACGGATTATTCCATGCC+TGG	0.447268	8:+68340590	MsaT045090.1:CDS
TATTCCATGCCTGGGATGAC+AGG	0.450141	8:+68340599	MsaT045090.1:CDS
GAGGAATCACCTTCAGGTGC+AGG	0.470142	8:+68340189	MsaT045090.1:CDS
CTTACATCTGACAATTTGAC+TGG	0.476820	8:-68341799	None:intergenic
GATGGAGAGAACAGTGATGT+TGG	0.500241	8:+68340440	MsaT045090.1:CDS
CAGTTTGTTATGGCTGCCGC+CGG	0.507838	8:+68340141	None:intergenic
TTGAAGATTTCTTCATGCAA+AGG	0.508242	8:+68340273	MsaT045090.1:CDS
GAAGGTTAATTTGATAATGA+CGG	0.519870	8:+68340574	MsaT045090.1:CDS
ACTAATTTGCAGGTGTTTGG+AGG	0.520826	8:+68341750	MsaT045090.1:intron
ATTTGCAGGTGTTTGGAGGA+AGG	0.521653	8:+68341754	MsaT045090.1:intron
AATTCATATCCTGTCATCCC+AGG	0.536780	8:-68340608	None:intergenic
GATAATGTTGATGGCGAAAG+TGG	0.540401	8:-68341976	None:intergenic
TGAATTACTCAAGAAAATCA+AGG	0.543151	8:+68340625	MsaT045090.1:CDS
TGCAATTCCCCTGCACCTGA+AGG	0.564770	8:-68340198	None:intergenic
TGACGGATTATTCCATGCCT+GGG	0.567665	8:+68340591	MsaT045090.1:CDS
AGGAATCACCTTCAGGTGCA+GGG	0.570190	8:+68340190	MsaT045090.1:CDS
ATATCCTGTCATCCCAGGCA+TGG	0.578908	8:-68340603	None:intergenic
TCAGACGACATGATCACCAC+TGG	0.582337	8:-68340813	None:intergenic
ATTCCTCCATCAAATTCGAC+CGG	0.585814	8:-68340173	None:intergenic
GTTATGGTGGCAGGGTGTGA+AGG	0.590843	8:+68340556	MsaT045090.1:intron
CTGAAAGATTTCATCATGAG+AGG	0.595036	8:+68341826	MsaT045090.1:CDS
CAGGTGTTTGGAGGAAGGAG+CGG	0.597585	8:+68341759	MsaT045090.1:intron
CATCATGAGAGGTGAAGTGA+AGG	0.602332	8:+68341837	MsaT045090.1:CDS
GGATCACATGAATGACGCAT+TGG	0.604562	8:-68341934	None:intergenic
ATTCGACCGGAAAATCTCGC+CGG	0.617787	8:-68340160	None:intergenic
GAGAATGTAGTTGATAGAGA+TGG	0.621435	8:-68341910	None:intergenic
GTGTTTGGAGGAAGGAGCGG+AGG	0.624937	8:+68341762	MsaT045090.1:CDS
TTTCCGGTCGAATTTGATGG+AGG	0.631772	8:+68340170	MsaT045090.1:CDS
GGAATCACCTTCAGGTGCAG+GGG	0.635571	8:+68340191	MsaT045090.1:CDS
CGACCGGAAAATCTCGCCGG+CGG	0.669618	8:-68340157	None:intergenic
ATGAGAGGTGAAGTGAAGGA+TGG	0.680662	8:+68341841	MsaT045090.1:CDS
AGTGGTGAGAACACTGACGA+TGG	0.682583	8:-68341958	None:intergenic
GGTGAGAACACTGACGATGG+CGG	0.683927	8:-68341955	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	68340150	68342020	68340150	ID=MsaG045090
Chr8	mRNA	68340150	68342020	68340150	ID=MsaT045090.1;Parent=MsaG045090
Chr8	exon	68340150	68340294	68340150	ID=MsaT045090.1.exon1;Parent=MsaT045090.1
Chr8	CDS	68340150	68340294	68340150	ID=cds.MsaT045090.1;Parent=MsaT045090.1
Chr8	exon	68340393	68340469	68340393	ID=MsaT045090.1.exon2;Parent=MsaT045090.1
Chr8	CDS	68340393	68340469	68340393	ID=cds.MsaT045090.1;Parent=MsaT045090.1
Chr8	exon	68340569	68340646	68340569	ID=MsaT045090.1.exon3;Parent=MsaT045090.1
Chr8	CDS	68340569	68340646	68340569	ID=cds.MsaT045090.1;Parent=MsaT045090.1
Chr8	exon	68340789	68340859	68340789	ID=MsaT045090.1.exon4;Parent=MsaT045090.1
Chr8	CDS	68340789	68340859	68340789	ID=cds.MsaT045090.1;Parent=MsaT045090.1
Chr8	exon	68341762	68342020	68341762	ID=MsaT045090.1.exon5;Parent=MsaT045090.1
Chr8	CDS	68341762	68342020	68341762	ID=cds.MsaT045090.1;Parent=MsaT045090.1

Gene Sequence

>MsaT045090.1

ATGGCTGCCGCCGGCGAGATTTTCCGGTCGAATTTGATGGAGGAATCACCTTCAGGTGCAGGGGAATTGCATGTGCTTGCTGTTGATGATAGTCTTGTTGATCGTAAAGTGATTGAACGTTTGTTGAAGATTTCTTCATGCAAAGTTACGGTTGTTGAGAGTGCAAGAAGAGCTCTCCAGTTTTTGGGATTGGATGGAGAGAACAGTGATGTTGGATTTGATGGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCTGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAATCTTCTGTTTTTAGAGAGATTCCAGTGGTGATCATGTCGTCTGAGAATGTTTTGACTCGAATTGATAGGTGTTTGGAGGAAGGAGCGGAGGATTTTTTGTTGAAGCCAGTCAAATTGTCAGATGTAAGACGCCTGAAAGATTTCATCATGAGAGGTGAAGTGAAGGATGGTGAGAAATGTTCTCTCAAAAGAATGCGATCATCAGATGATTGTAGTCCATCTCTATCAACTACATTCTCACCAATGCGTCATTCATGTGATCCGCCATCGTCAGTGTTCTCACCACTTTCGCCATCAACATTATCCTCTAAAAAATCTAGATTGTGA

Protein sequence

>MsaT045090.1

MAAAGEIFRSNLMEESPSGAGELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQFLGLDGENSDVGFDGVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKDGEKCSLKRMRSSDDCSPSLSTTFSPMRHSCDPPSSVFSPLSPSTLSSKKSRL*