AlfalfaGEDB | MsaG045161

M. sativa ssp. caerulea / MsaG045161

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045161	XP_003608986.1	94.755	286	10	3	4	285	53	337	0.0	538

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045161	sp\|Q02283\|HAT5_ARATH	44.954	218	88	6	4	218	33	221	3.81e-43	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045161	tr\|B7FK22\|B7FK22_MEDTR	94.755	286	10	3	4	285	53	337	0.0	538

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TFs/TRs:

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Gene ID	Type	Classification
MsaG045161	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045161	MtrunA17_Chr4g0060031	94.755	286	10	3	4	285	53	337	0.0	538
MsaG045161	MtrunA17_Chr5g0415941	48.630	292	129	9	4	283	42	324	3.79e-73	227
MsaG045161	MtrunA17_Chr8g0362751	41.522	289	113	8	4	285	47	286	3.62e-52	172
MsaG045161	MtrunA17_Chr6g0450991	45.374	227	92	6	3	226	31	228	2.28e-46	157
MsaG045161	MtrunA17_Chr5g0416391	53.846	143	56	3	17	150	45	186	1.60e-38	136
MsaG045161	MtrunA17_Chr8g0362151	54.815	135	53	3	24	150	52	186	2.75e-38	136
MsaG045161	MtrunA17_Chr3g0123691	58.559	111	46	0	37	147	51	161	1.40e-36	132
MsaG045161	MtrunA17_Chr6g0453021	45.399	163	77	3	1	155	54	212	4.46e-36	130
MsaG045161	MtrunA17_Chr3g0119291	62.857	105	39	0	45	149	58	162	9.34e-36	129
MsaG045161	MtrunA17_Chr8g0381741	60.784	102	40	0	45	146	53	154	2.96e-35	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045161	AT3G01470.1	44.954	218	88	6	4	218	33	221	3.87e-44	151
MsaG045161	AT4G40060.1	42.308	234	115	7	21	251	31	247	2.34e-40	142
MsaG045161	AT3G01220.1	58.621	116	44	1	44	159	85	196	1.16e-36	132
MsaG045161	AT2G22430.1	63.636	99	36	0	44	142	60	158	1.30e-36	132
MsaG045161	AT5G15150.1	65.263	95	33	0	44	138	113	207	2.44e-36	132
MsaG045161	AT1G69780.1	54.918	122	50	1	34	150	73	194	6.85e-36	130
MsaG045161	AT5G65310.2	62.626	99	37	0	44	142	52	150	8.73e-36	130
MsaG045161	AT5G65310.1	62.626	99	37	0	44	142	70	168	1.06e-35	130
MsaG045161	AT1G26960.1	48.872	133	67	1	10	141	34	166	1.39e-31	118
MsaG045161	AT1G27045.1	47.445	137	65	1	22	151	37	173	6.44e-31	115

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Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACTCCATCAGTGTAACG+TGG	0.635850	8:+69453953	None:intergenic
AACCAAATAGCAACTTGCCG+TGG	0.641928	8:+69454708	None:intergenic
AAGACCTTGGTTTGCAGCCA+CGG	0.500948	8:-69454725	MsaT045161.1:CDS
AAGATCATCATCAAGCTCTT+TGG	0.376736	8:-69453766	MsaT045161.1:CDS
AAGATGTTCAAGGAAGGAAA+AGG	0.536023	8:-69454926	MsaT045161.1:CDS
AAGGAAGGAAAAGGTGCAAC+AGG	0.438515	8:-69454917	MsaT045161.1:CDS
ACAACAAGCTTGAACCAGAG+AGG	0.699556	8:-69454764	MsaT045161.1:CDS
ACAAGGTGAAAGTGAAACAA+AGG	0.601903	8:-69454128	MsaT045161.1:CDS
ACACTCCATCAGTGTAACGT+GGG	0.696078	8:+69453954	None:intergenic
ACCAAAGGTTTATTCATTGT+TGG	0.412212	8:+69454091	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	69453751	69455646	69453751	ID=MsaG045161
Chr8	mRNA	69453751	69455646	69453751	ID=MsaT045161.1;Parent=MsaG045161
Chr8	exon	69453751	69454206	69453751	ID=MsaT045161.1.exon3;Parent=MsaT045161.1
Chr8	CDS	69453751	69454206	69453751	ID=cds.MsaT045161.1;Parent=MsaT045161.1
Chr8	exon	69454578	69454972	69454578	ID=MsaT045161.1.exon2;Parent=MsaT045161.1
Chr8	CDS	69454578	69454972	69454578	ID=cds.MsaT045161.1;Parent=MsaT045161.1
Chr8	exon	69455640	69455646	69455640	ID=MsaT045161.1.exon1;Parent=MsaT045161.1
Chr8	CDS	69455640	69455646	69455640	ID=cds.MsaT045161.1;Parent=MsaT045161.1

Gene Sequence

>MsaT045161.1

ATGGCACGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAAGGAAAAGGTGCAACAGGTCTTTCTTCGGAGGATTTGATCTTGACGAAAACGGCGAGGATGAGATGGATGAGTACTTTCATCAATCCGAGAAGAAACGGCGTCTCTCAGTGGATCAAGTTCAGTTTCTTGAGAAAAGCTTTGAAGAGGACAACAAGCTTGAACCAGAGAGGAAAACCAAGCTAGCTAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAAAACCGTCGTGCAAGATGGAAGACCAAACAGCTTGAGAAGGATTATGATTCTCTTAATGATAGTTATGAGTCTCTTAAGACAGATTATGACAACCTTCTCAAAGAGAAAGATAGGTTACAATCTGAGGTAGCAAGCCTAACTGAAAAGGTACTTGCAAGAGAGAAACAAGAGGGAAAATTCAAACAAGGTGAAAGTGAAACAAAGGAATTCTTGCAGGAACCAACAATGAATAAACCTTTGGTTGATTCAGTTTCTGAGGGTGAAGGATCCAAATTGTCAATTGTTGAGGCTTCTAATAACAATAACAAACTTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACTGATGGAGTGTTAGAGACAGGTGATTCTTCCTATGTATTTGAACATGAATATCAATCGGACCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTACATCTTTACAAAACTTGAAGATGTGAATTACTCCGACCCGCCACATGATAATTCATCAAGTTATGGATTTCAAGAGGAAGATCATCATCAAGCTCTTTGGCCTTGGTCTTATTAA

Protein sequence

>MsaT045161.1

MARSRSMVSFEDVQGRKRCNRSFFGGFDLDENGEDEMDEYFHQSEKKRRLSVDQVQFLEKSFEEDNKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLNDSYESLKTDYDNLLKEKDRLQSEVASLTEKVLAREKQEGKFKQGESETKEFLQEPTMNKPLVDSVSEGEGSKLSIVEASNNNNKLEDISSARSDILDCDSPRYTDGVLETGDSSYVFEHEYQSDLSQDEEDNLLPPYIFTKLEDVNYSDPPHDNSSSYGFQEEDHHQALWPWSY*