AlfalfaGEDB | MsaG045178

M. sativa ssp. caerulea / MsaG045178

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045178	XP_003609019.1	96.272	617	18	2	1	616	1	613	0.0	1217

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045178	sp\|A0A3Q7GFB5\|WK72A_SOLLC	50.977	512	181	19	65	563	63	517	2.06e-123	378

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045178	tr\|G7JPY7\|G7JPY7_MEDTR	96.272	617	18	2	1	616	1	613	0.0	1217

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TFs/TRs:

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Gene ID	Type	Classification
MsaG045178	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG009655	MsaG045178	0.802178	1.065320e-48	1.513165e-46
MsaG017295	MsaG045178	0.805485	2.207558e-49	3.384613e-47
MsaG018144	MsaG045178	0.806721	1.216178e-49	1.919795e-47
MsaG018966	MsaG045178	0.809895	2.578669e-50	4.392511e-48
MsaG019356	MsaG045178	0.805252	2.468773e-49	3.764743e-47
MsaG021623	MsaG045178	0.839124	3.523190e-57	1.338129e-54
MsaG021746	MsaG045178	0.818721	2.951179e-52	6.275866e-50
MsaG032373	MsaG045178	0.826667	4.262299e-54	1.122890e-51
MsaG040587	MsaG045178	0.806774	1.184994e-49	1.872973e-47
MsaG042566	MsaG045178	0.802485	9.218167e-49	1.318591e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045178	MtrunA17_Chr4g0060271	96.272	617	18	2	1	616	1	613	0.0	1217
MsaG045178	MtrunA17_Chr7g0216891	40.071	564	263	19	68	599	38	558	5.57e-96	305
MsaG045178	MtrunA17_Chr2g0322391	34.298	484	219	17	59	527	157	556	6.72e-56	199
MsaG045178	MtrunA17_Chr3g0099641	36.158	354	152	9	64	402	87	381	3.61e-52	186
MsaG045178	MtrunA17_Chr4g0051181	35.940	537	260	22	1	526	10	473	4.04e-51	184
MsaG045178	MtrunA17_Chr2g0288871	35.417	480	196	16	70	527	143	530	2.62e-49	180
MsaG045178	MtrunA17_Chr4g0075201	37.798	336	154	8	70	405	120	400	6.22e-49	178
MsaG045178	MtrunA17_Chr7g0270831	71.845	103	29	0	233	335	190	292	3.32e-47	171
MsaG045178	MtrunA17_Chr2g0302391	49.143	175	77	3	225	399	181	343	1.84e-43	161
MsaG045178	MtrunA17_Chr4g0025061	51.948	154	61	3	244	397	345	485	8.87e-42	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045178	AT5G15130.1	42.799	493	198	18	63	527	28	464	1.44e-88	285
MsaG045178	AT5G15130.2	42.887	478	189	18	78	527	1	422	7.83e-85	275
MsaG045178	AT1G18860.1	38.421	570	235	19	7	527	8	510	1.95e-79	261
MsaG045178	AT1G69810.1	38.788	330	168	9	68	394	23	321	3.01e-57	198
MsaG045178	AT1G68150.1	81.633	98	18	0	243	340	219	316	4.10e-53	186
MsaG045178	AT4G04450.2	37.921	356	152	12	67	394	8	322	8.65e-53	187
MsaG045178	AT4G04450.1	38.202	356	151	12	67	394	102	416	5.79e-52	187
MsaG045178	AT1G62300.1	42.808	292	120	7	243	531	296	543	3.83e-46	171
MsaG045178	AT1G69810.2	38.776	294	146	9	104	394	1	263	4.45e-46	166
MsaG045178	AT4G01720.1	77.778	81	18	0	239	319	219	299	2.28e-39	151

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Find 118 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGCTTCTGCATCTCC+TGG	0.524615	8:+69645550	MsaT045178.1:CDS
AAACTCCTGCAAAGAAAGCT+AGG	0.468281	8:+69644042	MsaT045178.1:CDS
AAATCAGGTAGCACAACTGA+AGG	0.555466	8:+69643885	MsaT045178.1:CDS
AAATTTGAAACATCAAAATC+AGG	0.497604	8:+69643870	MsaT045178.1:CDS
AACAAAAGCTCAAATGGGTG+AGG	0.591231	8:+69643545	MsaT045178.1:CDS
AACAAGGAAGAGTTGTCACT+TGG	0.493048	8:+69643837	MsaT045178.1:CDS
AACCTAAGCACTTTAAACTT+TGG	0.427632	8:+69645130	MsaT045178.1:CDS
AACTCCTGCAAAGAAAGCTA+GGG	0.594594	8:+69644043	MsaT045178.1:CDS
AAGAAGGGTATCTTGGTAGT+TGG	0.437752	8:-69645000	None:intergenic
AAGAGAAGTGAGCATAGTAC+TGG	0.527731	8:+69641354	MsaT045178.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	69641300	69645600	69641300	ID=MsaG045178
Chr8	mRNA	69641300	69645600	69641300	ID=MsaT045178.1;Parent=MsaG045178
Chr8	exon	69641300	69641422	69641300	ID=MsaT045178.1.exon1;Parent=MsaT045178.1
Chr8	CDS	69641300	69641422	69641300	ID=cds.MsaT045178.1;Parent=MsaT045178.1
Chr8	exon	69643224	69643298	69643224	ID=MsaT045178.1.exon2;Parent=MsaT045178.1
Chr8	CDS	69643224	69643298	69643224	ID=cds.MsaT045178.1;Parent=MsaT045178.1
Chr8	exon	69643525	69644097	69643525	ID=MsaT045178.1.exon3;Parent=MsaT045178.1
Chr8	CDS	69643525	69644097	69643525	ID=cds.MsaT045178.1;Parent=MsaT045178.1
Chr8	exon	69644372	69644485	69644372	ID=MsaT045178.1.exon4;Parent=MsaT045178.1
Chr8	CDS	69644372	69644485	69644372	ID=cds.MsaT045178.1;Parent=MsaT045178.1
Chr8	exon	69644635	69645600	69644635	ID=MsaT045178.1.exon5;Parent=MsaT045178.1
Chr8	CDS	69644635	69645600	69644635	ID=cds.MsaT045178.1;Parent=MsaT045178.1

Gene Sequence

>MsaT045178.1

ATGGAGTGCAATTCTGGGAGATCTGGTGATGGAGATAGTGAACTCAAGGAAGATAAGAGAAGTGAGCATAGTACTGGTGATGATCATGAAAGTCATCATCAAAAAAAGGAGACTATTGTTGAGGAAGCACCCATTGCTAATACTGAAAGATCAATTGAGGCTGGTCCAAGCACAATATCCTCGCCCAAAAATGATAAGGTTGATGATCAGCTTGAGACAACAAAAGCTCAAATGGGTGAGGTGAGAAAAGAAAATCAACGGTTAAAGATGTGCTTGAACAAAATAATGACCGAATACCGAGCACTGGAAATGCAATTTAACAATATGGTTAAGCAAGAAACAAAAAAGAGCAATGTTGATCACAATGATAATAACCATGAAGAAATAAATGCAGAATCAGATCTTGTTTCCCTCAGCCTTGGAAGAGTTCCTAGTAACAATATTCCAAAAAATGATCAAGAGAAAGTTAACAAAGTGTCTAAACTAGCATTGAATAATGATGAAGAATTCAACAAGGAAGAGTTGTCACTTGGATTGGAATGTAAATTTGAAACATCAAAATCAGGTAGCACAACTGAAGGGTTACCAAATATTCCAAGTCCAGTGAATAGTTCTGAAGTTGTTCCAACAAAGGATGATGAAGTTGTAGAGACTTGGCCACCAAGTAAGACACTCAATAAGACAATGAGAGATGCTGAGGAAGAAGTTGCTCAACAAACTCCTGCAAAGAAAGCTAGGGTTTGTGTTAGAGCAAGATGTGACACCCCAACGATGAATGATGGATGCCAATGGAGAAAGTATGGACAAAAAATTGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGTCCGGTTAGAAAACAGGTACAAAGATGTGTTGAGGACATGTCTATTCTAATCACAACATACGAAGGGACACACAACCACAGCCTTCCACTTTCAGCAACAGCCATGGCTTCCACAACTTCCGCGGCCGCATCGATGCTATTATCAGGTTCATCAACCTCCAACTCTGGTTCAATGCCATCAGCACAAACCAACAACAATCTTCATGGCCTAAACTTTTATCTACCAGATGGTTCAAAATCAAATCAATTATACCTATCCAACCCTGCACTATCATCTCAACATTCACATCCAACTATCACTCTTGACCTCACTTCAAACCCATCAAATTCTTCAACATCATCGCCCTTTGTTAGATTCAATTCAAGCTACAACAACAATAACCAACTACCAAGATACCCTTCTTCCACTCTTAGCTTTAGTTCTCCTGAATCAAATCCCATGCATTGGAATAGCTTCCTCAATTATGCTACTACTCAAAATCAACCATATAGTAATAATAGGAACAATAATAACCTAAGCACTTTAAACTTTGGTAGACAAAACACAATGGAAAGTATATACCAAACCTACATGCAAAAAAACAACAATAGTTCAAACATTTCACAACATGTAGGTTTACAAGATAGTACTATATCTGCAGCAACAAAAGCTATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTTCTTCACTTATTGGAAACACTAATCAAGGGAATCAAAATCAAAGTGCAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCAGGTTTCTTCTACTTCATTGCCTTCATCAAGTTCTAAAGTAAATGGTTGTGGTTCAAGTTTCTTGAACAAAACGGCACCAGTGAACAATACACAGAATGGAAGTTTGATGTTGTTATCTCCTTCTTTGCCATTTTCTGCACCTAAAAGTGCTTCTGCATCTCCTGGTGGTGATAATAGTGACAATACCAATTAA

Protein sequence

>MsaT045178.1

MECNSGRSGDGDSELKEDKRSEHSTGDDHESHHQKKETIVEEAPIANTERSIEAGPSTISSPKNDKVDDQLETTKAQMGEVRKENQRLKMCLNKIMTEYRALEMQFNNMVKQETKKSNVDHNDNNHEEINAESDLVSLSLGRVPSNNIPKNDQEKVNKVSKLALNNDEEFNKEELSLGLECKFETSKSGSTTEGLPNIPSPVNSSEVVPTKDDEVVETWPPSKTLNKTMRDAEEEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVEDMSILITTYEGTHNHSLPLSATAMASTTSAAASMLLSGSSTSNSGSMPSAQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTSNPSNSSTSSPFVRFNSSYNNNNQLPRYPSSTLSFSSPESNPMHWNSFLNYATTQNQPYSNNRNNNNLSTLNFGRQNTMESIYQTYMQKNNNSSNISQHVGLQDSTISAATKAITADPTFQSALAAALSSLIGNTNQGNQNQSAGENLSQKMKWAEMFQVSSTSLPSSSSKVNGCGSSFLNKTAPVNNTQNGSLMLLSPSLPFSAPKSASASPGGDNSDNTN*