AlfalfaGEDB | MsaG045210

M. sativa ssp. caerulea / MsaG045210

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048509 GO:0050789 GO:0050793 GO:0065007
PFAM: PF04770.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045210	RHN63663.1	97.403	77	1	1	1	76	1	77	4.83e-46	151

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045210	sp\|Q2Q493\|MIF3_ARATH	64.384	73	24	1	1	71	1	73	4.83e-25	91.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045210	tr\|A0A396IG90\|A0A396IG90_MEDTR	97.403	77	1	1	1	76	1	77	2.31e-46	151

TFs/TRs:

Gene ID	Type	Classification
MsaG045210	TF	zf-HD

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045210	MtrunA17_Chr4g0060731	97.403	77	1	1	1	76	1	77	4.44e-50	151
MsaG045210	MtrunA17_Chr3g0092371	70.270	74	15	3	1	71	1	70	1.20e-27	95.5
MsaG045210	MtrunA17_Chr6g0453221	69.565	69	17	2	1	69	1	65	9.97e-27	93.2
MsaG045210	MtrunA17_Chr3g0133181	62.264	53	17	1	22	71	78	130	9.88e-17	71.6
MsaG045210	MtrunA17_Chr8g0361671	57.627	59	20	1	17	70	57	115	3.11e-16	71.2
MsaG045210	MtrunA17_Chr1g0188441	60.000	55	17	2	21	71	6	59	5.47e-16	68.6
MsaG045210	MtrunA17_Chr5g0427051	60.377	53	18	1	22	71	56	108	3.18e-15	67.4
MsaG045210	MtrunA17_Chr7g0217231	55.556	54	19	1	22	70	86	139	3.55e-15	68.2
MsaG045210	MtrunA17_Chr2g0315941	50.000	66	27	2	8	70	55	117	5.83e-15	67.0
MsaG045210	MtrunA17_Chr4g0076821	59.649	57	18	2	24	76	113	168	3.01e-14	65.5
MsaG045210	MtrunA17_Chr8g0367691	56.000	50	19	1	24	70	69	118	5.99e-14	64.3
MsaG045210	MtrunA17_Chr5g0404271	52.459	61	24	2	17	73	92	151	8.47e-14	63.9
MsaG045210	MtrunA17_Chr5g0412501	58.000	50	18	1	24	70	78	127	1.35e-13	63.2
MsaG045210	MtrunA17_Chr6g0453231	59.615	52	16	2	24	70	91	142	1.55e-13	63.5
MsaG045210	MtrunA17_Chr6g0479901	56.000	50	18	1	24	69	19	68	1.69e-12	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045210	AT1G18835.1	64.384	73	24	1	1	71	1	73	4.91e-26	91.7
MsaG045210	AT3G28917.1	55.952	84	24	2	1	71	1	84	5.14e-23	84.3
MsaG045210	AT1G74660.1	69.811	53	13	1	22	71	37	89	4.27e-19	74.7
MsaG045210	AT1G74660.2	69.811	53	13	1	22	71	37	89	6.13e-19	73.9
MsaG045210	AT3G50890.1	52.778	72	27	3	6	71	40	110	1.99e-16	70.9
MsaG045210	AT1G14440.1	59.649	57	18	2	19	71	85	140	6.96e-16	70.1
MsaG045210	AT1G14440.2	59.649	57	18	2	19	71	85	140	6.96e-16	70.1
MsaG045210	AT2G18350.1	60.784	51	17	1	24	71	82	132	1.22e-15	68.9
MsaG045210	AT2G02540.2	61.111	54	16	2	21	70	84	136	1.71e-15	68.9
MsaG045210	AT2G02540.1	61.111	54	16	2	21	70	84	136	1.71e-15	68.9
MsaG045210	AT5G15210.1	56.364	55	19	1	21	70	53	107	2.64e-15	68.2
MsaG045210	AT5G42780.1	60.000	50	19	1	24	72	64	113	6.57e-15	66.6
MsaG045210	AT4G24660.1	61.111	54	16	2	22	71	47	99	7.50e-15	66.2
MsaG045210	AT5G39760.1	50.000	66	28	1	9	69	41	106	9.90e-15	67.0
MsaG045210	AT4G24660.2	61.111	54	16	2	22	71	47	99	1.11e-14	65.9
MsaG045210	AT1G69600.1	58.491	53	17	1	22	69	29	81	2.36e-14	65.5
MsaG045210	AT3G28920.1	55.932	59	21	1	22	75	50	108	3.31e-14	65.5
MsaG045210	AT5G60480.1	51.852	54	21	1	21	69	34	87	8.65e-14	63.5
MsaG045210	AT5G65410.1	56.863	51	19	1	24	71	75	125	1.10e-13	63.9
MsaG045210	AT1G75240.1	52.542	59	25	1	16	71	68	126	1.89e-13	63.5
MsaG045210	AT1G14687.1	52.174	46	20	1	24	69	7	50	8.91e-11	54.7

Find 15 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAAGAAATATTGTTGGATA+TGG	0.243499	8:+70052905	MsaT045210.1:CDS
ATGGAATTCATGGCATGTTC+AGG	0.335777	8:+70052983	MsaT045210.1:CDS
TCATCTTCAAGAAATATTGT+TGG	0.392599	8:+70052899	MsaT045210.1:CDS
GTGCTGCTTGCGGTTGTCAT+AGG	0.419461	8:+70053023	MsaT045210.1:CDS
GTCATAGGAACTTCCACAAA+AGG	0.480871	8:+70053038	MsaT045210.1:CDS
CTATGCTGTTGATGGATGTA+TGG	0.485307	8:+70052964	MsaT045210.1:CDS
AAGAATCATGCAGCATATAG+TGG	0.485623	8:+70052938	MsaT045210.1:CDS
AGTGGAGGCTATGCTGTTGA+TGG	0.489516	8:+70052956	MsaT045210.1:CDS
TGATGGATGTATGGAATTCA+TGG	0.495255	8:+70052973	MsaT045210.1:CDS
TGGAATTCATGGCATGTTCA+GGG	0.512543	8:+70052984	MsaT045210.1:CDS
AAAACGGCAAGTGGTGGTGG+TGG	0.605250	8:+70052859	MsaT045210.1:CDS
GCACTTACATGTGCTGCTTG+CGG	0.620281	8:+70053013	MsaT045210.1:CDS
GGAATTCATGGCATGTTCAG+GGG	0.647724	8:+70052985	MsaT045210.1:CDS
AATCATGCAGCATATAGTGG+AGG	0.667408	8:+70052941	MsaT045210.1:CDS
GTATTGCAAAGTACAGACTG+AGG	0.757439	8:+70053064	MsaT045210.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	70052854	70053084	70052854	ID=MsaG045210
Chr8	mRNA	70052854	70053084	70052854	ID=MsaT045210.1;Parent=MsaG045210
Chr8	exon	70052854	70053084	70052854	ID=MsaT045210.1.exon1;Parent=MsaT045210.1
Chr8	CDS	70052854	70053084	70052854	ID=cds.MsaT045210.1;Parent=MsaT045210.1

Gene Sequence	>MsaT045210.1 ATGAAAAAACGGCAAGTGGTGGTGGTGGTGAAACGCAACAGTACTTCATCTTCAAGAAATATTGTTGGATATGGAGAGTGTCAAAAGAATCATGCAGCATATAGTGGAGGCTATGCTGTTGATGGATGTATGGAATTCATGGCATGTTCAGGGGAAGAAGCACTTACATGTGCTGCTTGCGGTTGTCATAGGAACTTCCACAAAAGGAAAGTATTGCAAAGTACAGACTGA
Protein sequence	>MsaT045210.1 MKKRQVVVVVKRNSTSSSRNIVGYGECQKNHAAYSGGYAVDGCMEFMACSGEEALTCAACGCHRNFHKRKVLQSTD*