AlfalfaGEDB | MsaG045300

M. sativa ssp. caerulea / MsaG045300

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045300	XP_024637221.1	94.886	176	9	0	1	176	1	176	2.81e-120	347

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045300	sp\|Q7Y040\|EJ2_SOLLC	73.256	172	45	1	1	171	1	172	4.46e-83	248

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045300	tr\|A0A396IDS8\|A0A396IDS8_MEDTR	94.152	171	10	0	1	171	1	171	6.02e-115	333

TFs/TRs:

Gene ID	Type	Classification
MsaG045300	TF	MADS-MIKC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000225	MsaG045300	0.843792	2.104137e-58	9.267385e-56
MsaG000405	MsaG045300	0.892858	2.397548e-74	8.224665e-71
MsaG000505	MsaG045300	0.813798	3.679110e-51	6.900582e-49
MsaG003315	MsaG045300	0.808254	5.770356e-50	9.448143e-48
MsaG004105	MsaG045300	0.808743	4.542000e-50	7.525327e-48
MsaG004178	MsaG045300	0.856500	5.990806e-62	4.087731e-59
MsaG004229	MsaG045300	0.809985	2.466554e-50	4.210676e-48
MsaG004998	MsaG045300	0.827332	2.959764e-54	7.943651e-52
MsaG005401	MsaG045300	0.801159	1.719970e-48	2.387116e-46
MsaG005537	MsaG045300	0.801235	1.659498e-48	2.307139e-46
MsaG006014	MsaG045300	0.800235	2.649613e-48	3.601413e-46
MsaG007202	MsaG045300	0.812511	7.028094e-51	1.276469e-48
MsaG007353	MsaG045300	0.815365	1.661430e-51	3.241534e-49
MsaG007400	MsaG045300	0.816807	7.944423e-52	1.607978e-49
MsaG007833	MsaG045300	0.806607	1.284786e-49	2.022761e-47
MsaG008552	MsaG045300	0.815123	1.879801e-51	3.644945e-49
MsaG009390	MsaG045300	0.814953	2.049502e-51	3.957143e-49
MsaG010263	MsaG045300	0.817000	7.191764e-52	1.462955e-49
MsaG010816	MsaG045300	0.801556	1.427538e-48	1.999183e-46
MsaG010894	MsaG045300	0.806956	1.085095e-49	1.722365e-47
MsaG010906	MsaG045300	0.825570	7.748091e-54	1.979864e-51
MsaG010899	MsaG045300	0.816631	8.695928e-52	1.752079e-49
MsaG012304	MsaG045300	0.829683	8.057710e-55	2.310873e-52
MsaG041900	MsaG045300	0.817126	6.741497e-52	1.375813e-49
MsaG041901	MsaG045300	0.809130	3.758414e-50	6.285012e-48
MsaG041902	MsaG045300	0.820536	1.142249e-52	2.548118e-50
MsaG041903	MsaG045300	0.816203	1.082983e-51	2.158354e-49
MsaG041904	MsaG045300	0.823451	2.430443e-53	5.861256e-51
MsaG043926	MsaG045300	0.811755	1.025494e-50	1.828009e-48
MsaG044336	MsaG045300	0.825777	6.924333e-54	1.779607e-51
MsaG044888	MsaG045300	0.851786	1.353766e-60	7.805002e-58
MsaG045225	MsaG045300	0.817482	5.608338e-52	1.155108e-49
MsaG045300	MsaG045409	0.807768	7.314529e-50	1.183716e-47
MsaG045300	MsaG046029	0.802011	1.152734e-48	1.631081e-46
MsaG045300	MsaG046862	0.808687	4.670475e-50	7.727519e-48
MsaG045300	MsaG000938	0.815228	1.781602e-51	3.463955e-49
MsaG045300	MsaG011672	0.821153	8.251006e-53	1.870981e-50
MsaG045300	MsaG011423	0.800126	2.787233e-48	3.779155e-46
MsaG045300	MsaG015507	0.805763	1.931264e-49	2.980365e-47
MsaG045300	MsaG016765	0.853703	3.858909e-61	2.380262e-58
MsaG045300	MsaG018815	0.833664	8.499268e-56	2.736061e-53
MsaG045300	MsaG026536	0.800099	2.823369e-48	3.825854e-46
MsaG045300	MsaG027475	0.819013	2.535062e-52	5.432482e-50
MsaG045300	MsaG033149	0.821507	6.842354e-53	1.566106e-50
MsaG045300	MsaG031747	0.808714	4.607414e-50	7.628287e-48
MsaG045300	MsaG037679	0.824694	1.245390e-53	3.106600e-51
MsaG045300	MsaG037372	0.808609	4.850056e-50	8.009320e-48
MsaG014732	MsaG045300	0.813931	3.439414e-51	6.472614e-49
MsaG014905	MsaG045300	0.803365	6.075626e-49	8.868569e-47
MsaG015202	MsaG045300	0.813407	4.480673e-51	8.321778e-49
MsaG016651	MsaG045300	0.843567	2.415148e-58	1.056109e-55
MsaG017689	MsaG045300	0.819312	2.169049e-52	4.684886e-50
MsaG019288	MsaG045300	0.828476	1.575225e-54	4.365836e-52
MsaG019420	MsaG045300	0.809474	3.173127e-50	5.350635e-48
MsaG021471	MsaG045300	0.810570	1.847819e-50	3.199665e-48
MsaG021997	MsaG045300	0.830694	4.577623e-55	1.351284e-52
MsaG022100	MsaG045300	0.807683	7.624871e-50	1.231406e-47
MsaG023762	MsaG045300	0.815577	1.490917e-51	2.924507e-49
MsaG023778	MsaG045300	0.820901	9.421993e-53	2.122257e-50
MsaG023971	MsaG045300	0.809426	3.248403e-50	5.471167e-48
MsaG025484	MsaG045300	0.856655	5.397139e-62	3.703262e-59
MsaG026714	MsaG045300	0.826932	3.686343e-54	9.783652e-52
MsaG026970	MsaG045300	0.807450	8.537379e-50	1.371123e-47
MsaG027057	MsaG045300	0.810540	1.875333e-50	3.245023e-48
MsaG027340	MsaG045300	0.848203	1.347216e-59	6.868987e-57
MsaG027933	MsaG045300	0.830995	3.865690e-55	1.151089e-52
MsaG028698	MsaG045300	0.833981	7.087444e-56	2.302787e-53
MsaG028768	MsaG045300	0.813030	5.415438e-51	9.963736e-49
MsaG029327	MsaG045300	0.804945	2.860024e-49	4.330413e-47
MsaG029949	MsaG045300	0.836366	1.785058e-56	6.229818e-54
MsaG032786	MsaG045300	0.807005	1.059934e-49	1.684370e-47
MsaG034207	MsaG045300	0.800072	2.858618e-48	3.871352e-46
MsaG035463	MsaG045300	0.809621	2.952143e-50	4.995541e-48
MsaG036047	MsaG045300	0.809621	2.952328e-50	4.995846e-48
MsaG041122	MsaG045300	0.820984	9.018261e-53	2.035863e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045300	MtrunA17_Chr4g0061671	94.152	171	10	0	1	171	1	171	1.16e-118	333
MsaG045300	MtrunA17_Chr6g0455511	69.186	172	52	1	1	171	1	172	1.46e-81	241
MsaG045300	MtrunA17_Chr7g0220111	68.023	172	54	1	1	171	1	172	6.43e-79	235
MsaG045300	MtrunA17_Chr3g0122251	64.407	177	58	1	1	172	1	177	1.75e-75	226
MsaG045300	MtrunA17_Chr5g0420091	65.318	173	58	2	1	171	1	173	2.64e-75	224
MsaG045300	MtrunA17_Chr8g0351051	59.322	177	69	3	1	175	1	176	1.14e-63	196
MsaG045300	MtrunA17_Chr4g0061691	55.952	168	72	1	1	166	1	168	1.82e-58	182
MsaG045300	MtrunA17_Chr8g0366231	55.882	170	69	3	1	166	1	168	4.26e-58	181
MsaG045300	MtrunA17_Chr5g0420081	51.136	176	78	2	1	171	1	173	6.14e-54	171
MsaG045300	MtrunA17_Chr7g0220121	50.000	168	80	3	1	166	1	166	6.10e-49	159
MsaG045300	MtrunA17_Chr6g0474371	47.977	173	87	2	1	170	1	173	6.06e-47	152
MsaG045300	MtrunA17_Chr3g0077501	46.512	172	89	2	1	170	1	171	1.95e-44	146
MsaG045300	MtrunA17_Chr8g0380021	44.186	172	93	2	1	170	17	187	2.96e-44	146
MsaG045300	MtrunA17_Chr2g0284911	45.349	172	91	2	1	170	16	186	7.45e-44	146
MsaG045300	MtrunA17_Chr7g0246431	47.674	172	79	4	1	166	1	167	2.30e-43	143
MsaG045300	MtrunA17_Chr4g0057151	48.810	168	83	3	1	166	1	167	4.02e-43	142
MsaG045300	MtrunA17_Chr8g0351031	44.186	172	92	3	1	169	1	171	4.79e-43	142
MsaG045300	MtrunA17_Chr1g0204111	46.243	173	89	2	1	170	17	188	5.97e-43	143
MsaG045300	MtrunA17_Chr3g0097101	45.349	172	91	2	1	170	16	186	9.01e-43	142
MsaG045300	MtrunA17_Chr2g0279821	42.105	171	97	2	1	170	1	170	1.61e-42	142
MsaG045300	MtrunA17_Chr8g0351041	43.210	162	88	3	1	159	1	161	1.23e-40	134
MsaG045300	MtrunA17_Chr4g0049541	39.181	171	102	2	1	170	1	170	7.42e-37	127
MsaG045300	MtrunA17_Chr4g0018421	41.420	169	96	2	1	166	1	169	1.69e-35	122
MsaG045300	MtrunA17_Chr5g0411691	36.471	170	107	1	1	170	1	169	1.93e-34	121
MsaG045300	MtrunA17_Chr8g0377561	96.552	58	2	0	1	58	1	58	5.88e-34	115
MsaG045300	MtrunA17_Chr7g0246381	80.597	67	13	0	1	67	1	67	9.27e-34	114
MsaG045300	MtrunA17_Chr8g0377551	54.310	116	49	2	63	175	1	115	5.78e-33	115
MsaG045300	MtrunA17_Chr5g0412461	40.237	169	98	2	1	167	1	168	1.03e-32	116
MsaG045300	MtrunA17_Chr2g0308251	68.000	75	24	0	1	75	1	75	2.33e-32	111
MsaG045300	MtrunA17_Chr5g0412271	40.237	169	98	2	1	167	1	168	2.75e-32	115
MsaG045300	MtrunA17_Chr3g0125241	44.604	139	73	2	1	138	26	161	5.84e-32	114
MsaG045300	MtrunA17_Chr5g0427401	37.209	172	103	3	1	170	1	169	2.36e-31	112
MsaG045300	MtrunA17_Chr1g0164791	36.464	181	91	4	1	166	1	172	1.17e-30	111
MsaG045300	MtrunA17_Chr4g0020221	36.559	186	91	4	1	171	1	174	1.74e-30	111
MsaG045300	MtrunA17_Chr1g0159661	42.069	145	80	2	1	144	1	142	1.32e-29	107
MsaG045300	MtrunA17_Chr1g0173161	69.565	69	21	0	1	69	1	69	9.56e-28	99.4
MsaG045300	MtrunA17_Chr4g0049901	35.838	173	102	3	1	167	27	196	1.10e-27	103
MsaG045300	MtrunA17_Chr3g0142191	39.735	151	85	3	1	149	1	147	6.18e-25	96.3
MsaG045300	MtrunA17_Chr5g0427921	63.333	60	22	0	1	60	1	60	9.89e-25	91.3
MsaG045300	MtrunA17_Chr5g0404951	35.862	145	81	3	1	138	1	140	3.76e-22	89.4
MsaG045300	MtrunA17_Chr4g0044071	63.793	58	21	0	1	58	1	58	9.29e-22	85.1
MsaG045300	MtrunA17_Chr3g0134451	57.143	70	30	0	1	70	1	70	1.70e-21	89.0
MsaG045300	MtrunA17_Chr5g0425191	65.517	58	20	0	1	58	1	58	2.20e-21	84.0
MsaG045300	MtrunA17_Chr2g0308271	34.014	147	83	4	28	171	9	144	2.25e-19	81.3
MsaG045300	MtrunA17_Chr1g0166611	77.778	45	10	0	16	60	20	64	4.47e-19	79.0
MsaG045300	MtrunA17_Chr2g0292791	35.897	156	79	6	2	155	9	145	3.16e-17	76.3
MsaG045300	MtrunA17_Chr8g0376821	35.821	134	65	4	1	131	1	116	4.72e-16	72.0
MsaG045300	MtrunA17_Chr8g0379021	34.043	141	75	5	2	126	12	150	5.21e-16	71.6
MsaG045300	MtrunA17_Chr8g0357771	46.774	62	33	0	1	62	1	62	7.02e-16	71.6
MsaG045300	MtrunA17_Chr1g0208581	52.632	57	27	0	2	58	9	65	1.03e-15	72.0
MsaG045300	MtrunA17_Chr1g0208561	52.542	59	26	1	2	58	7	65	1.22e-15	72.0
MsaG045300	MtrunA17_Chr3g0089141	50.877	57	28	0	2	58	9	65	1.30e-15	71.6
MsaG045300	MtrunA17_Chr1g0175611	35.036	137	72	6	1	136	1	121	1.69e-15	70.5
MsaG045300	MtrunA17_Chr2g0333981	40.000	95	55	2	1	95	11	103	1.76e-15	70.5
MsaG045300	MtrunA17_Chr5g0417661	54.717	53	24	0	1	53	56	108	2.39e-15	68.9
MsaG045300	MtrunA17_Chr1g0169761	34.351	131	71	3	1	131	1	116	4.14e-15	69.3
MsaG045300	MtrunA17_Chr3g0099421	55.357	56	25	0	2	57	34	89	4.32e-15	70.9
MsaG045300	MtrunA17_Chr1g0206701	33.333	156	83	7	2	155	9	145	5.14e-15	70.5
MsaG045300	MtrunA17_Chr2g0325971	49.123	57	29	0	2	58	9	65	5.92e-15	70.1
MsaG045300	MtrunA17_Chr4g0052061	45.902	61	33	0	1	61	1	61	7.86e-15	68.2
MsaG045300	MtrunA17_Chr1g0149391	54.386	57	26	0	2	58	9	65	8.32e-15	69.7
MsaG045300	MtrunA17_Chr3g0099411	51.786	56	27	0	2	57	9	64	1.33e-14	68.9
MsaG045300	MtrunA17_Chr5g0419601	53.448	58	27	0	1	58	8	65	1.62e-14	68.9
MsaG045300	MtrunA17_Chr1g0206721	50.877	57	28	0	2	58	9	65	2.09e-14	68.6
MsaG045300	MtrunA17_Chr8g0355091	50.877	57	28	0	2	58	9	65	2.18e-14	68.6
MsaG045300	MtrunA17_Chr1g0187361	50.877	57	28	0	2	58	9	65	3.63e-14	68.2
MsaG045300	MtrunA17_Chr1g0180591	46.552	58	31	0	1	58	1	58	4.81e-14	66.6
MsaG045300	MtrunA17_Chr1g0188671	50.877	57	28	0	2	58	47	103	4.92e-14	68.2
MsaG045300	MtrunA17_Chr1g0175601	31.447	159	86	5	1	154	1	141	5.91e-14	66.6
MsaG045300	MtrunA17_Chr2g0317451	52.632	57	27	0	2	58	9	65	6.11e-14	67.4
MsaG045300	MtrunA17_Chr2g0317481	52.632	57	27	0	2	58	9	65	6.30e-14	67.4
MsaG045300	MtrunA17_Chr4g0052081	45.000	60	33	0	1	60	1	60	7.55e-14	66.2
MsaG045300	MtrunA17_Chr4g0074101	46.552	58	31	0	1	58	1	58	7.94e-14	66.2
MsaG045300	MtrunA17_Chr1g0206991	33.974	156	82	6	2	155	9	145	8.00e-14	66.2
MsaG045300	MtrunA17_Chr2g0300421	36.957	92	50	2	2	85	7	98	1.24e-13	65.5
MsaG045300	MtrunA17_Chr5g0422421	53.571	56	26	0	2	57	9	64	1.45e-13	66.2
MsaG045300	MtrunA17_Chr4g0060841	50.943	53	26	0	1	53	1	53	1.59e-13	67.4
MsaG045300	MtrunA17_Chr5g0422941	52.632	57	27	0	2	58	9	65	1.83e-13	66.2
MsaG045300	MtrunA17_Chr4g0018951	37.600	125	56	5	16	126	26	142	5.52e-13	63.5
MsaG045300	MtrunA17_Chr8g0356071	41.935	62	36	0	1	62	1	62	1.16e-12	62.8
MsaG045300	MtrunA17_Chr3g0119901	27.976	168	99	5	1	148	8	173	1.69e-12	63.2
MsaG045300	MtrunA17_Chr3g0085241	29.167	168	97	6	1	148	40	205	1.72e-12	63.5
MsaG045300	MtrunA17_Chr4g0071601	42.105	95	53	2	1	95	11	103	1.92e-12	62.4
MsaG045300	MtrunA17_Chr3g0111841	50.000	54	27	0	8	61	2	55	7.73e-12	58.2
MsaG045300	MtrunA17_Chr2g0300441	47.458	59	29	1	2	58	7	65	9.67e-12	61.2
MsaG045300	MtrunA17_Chr3g0089151	43.860	57	32	0	2	58	9	65	1.61e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045300	AT5G15800.1	69.767	172	50	2	1	170	1	172	4.13e-78	233
MsaG045300	AT5G15800.2	69.767	172	50	2	1	170	1	172	8.69e-78	233
MsaG045300	AT1G24260.1	65.363	179	57	2	1	175	1	178	4.33e-77	231
MsaG045300	AT2G03710.3	66.279	172	56	2	1	170	1	172	4.34e-77	228
MsaG045300	AT1G24260.2	65.000	180	57	2	1	175	1	179	6.77e-77	230
MsaG045300	AT2G03710.1	66.474	173	56	2	1	171	1	173	7.26e-77	230
MsaG045300	AT2G03710.2	66.474	173	56	2	1	171	1	173	7.75e-77	230
MsaG045300	AT3G02310.2	65.556	180	58	3	1	176	1	180	1.28e-76	228
MsaG045300	AT3G02310.1	67.052	173	55	2	1	171	1	173	3.37e-76	228
MsaG045300	AT1G24260.3	66.875	160	48	1	1	155	1	160	5.49e-71	214
MsaG045300	AT1G69120.2	53.757	173	78	2	1	171	1	173	1.43e-60	188
MsaG045300	AT1G69120.1	53.757	173	78	2	1	171	1	173	7.16e-60	187
MsaG045300	AT2G45650.1	55.429	175	76	2	1	174	1	174	3.43e-59	185
MsaG045300	AT1G26310.1	54.857	175	75	2	1	171	1	175	3.97e-58	182
MsaG045300	AT5G60910.1	51.136	176	78	2	1	171	1	173	7.27e-58	181
MsaG045300	AT3G61120.1	51.136	176	83	3	1	175	1	174	9.64e-50	160
MsaG045300	AT4G09960.1	47.093	172	88	2	1	170	1	171	3.62e-47	154
MsaG045300	AT4G09960.6	47.093	172	88	2	1	170	2	172	3.72e-47	154
MsaG045300	AT4G09960.5	47.093	172	88	2	1	170	11	181	5.52e-47	154
MsaG045300	AT4G09960.3	47.093	172	88	2	1	170	27	197	9.66e-47	153
MsaG045300	AT4G22950.2	49.714	175	80	4	1	171	1	171	2.59e-45	147
MsaG045300	AT2G45660.1	44.253	174	94	2	1	172	1	173	1.08e-44	147
MsaG045300	AT4G18960.1	47.368	171	87	2	2	170	18	187	1.30e-44	148
MsaG045300	AT4G09960.4	47.771	157	79	2	1	155	96	251	4.19e-44	149
MsaG045300	AT4G09960.2	51.773	141	65	2	1	139	1	140	5.38e-44	145
MsaG045300	AT4G22950.3	49.711	173	79	4	1	169	1	169	1.01e-43	144
MsaG045300	AT4G22950.1	49.711	173	79	4	1	169	1	169	1.01e-43	144
MsaG045300	AT5G62165.3	45.614	171	90	2	1	169	1	170	1.14e-43	144
MsaG045300	AT5G62165.1	45.614	171	90	2	1	169	1	170	1.14e-43	144
MsaG045300	AT5G62165.2	45.614	171	90	2	1	169	1	170	1.14e-43	144
MsaG045300	AT3G58780.1	44.828	174	89	3	1	170	16	186	1.94e-43	145
MsaG045300	AT3G58780.5	44.828	174	89	3	1	170	22	192	2.37e-43	145
MsaG045300	AT2G42830.1	45.402	174	88	3	1	170	16	186	9.08e-43	143
MsaG045300	AT4G11880.2	49.686	159	77	2	1	157	1	158	1.05e-42	140
MsaG045300	AT4G11880.3	49.686	159	77	2	1	157	1	158	1.05e-42	140
MsaG045300	AT3G30260.1	46.711	152	79	1	1	150	1	152	1.10e-42	143
MsaG045300	AT2G45660.2	45.223	157	83	2	1	155	1	156	1.30e-42	140
MsaG045300	AT4G11880.4	52.381	147	67	2	1	145	1	146	5.43e-42	140
MsaG045300	AT4G11880.1	52.381	147	67	2	1	145	1	146	5.43e-42	140
MsaG045300	AT5G62165.17	46.753	154	79	2	1	152	1	153	5.55e-42	138
MsaG045300	AT5G62165.12	46.753	154	79	2	1	152	1	153	5.55e-42	138
MsaG045300	AT5G62165.11	46.753	154	79	2	1	152	1	153	5.55e-42	138
MsaG045300	AT2G42830.2	44.886	176	88	4	1	170	16	188	9.02e-41	138
MsaG045300	AT5G62165.10	44.375	160	86	2	1	158	1	159	1.02e-40	136
MsaG045300	AT5G62165.4	44.375	160	86	2	1	158	1	159	1.02e-40	136
MsaG045300	AT3G58780.2	42.941	170	91	1	1	170	16	179	1.84e-40	137
MsaG045300	AT3G58780.3	39.394	198	90	3	1	170	16	211	8.73e-40	136
MsaG045300	AT5G62165.6	46.259	147	76	2	1	145	1	146	8.93e-40	132
MsaG045300	AT5G62165.9	46.259	147	76	2	1	145	1	146	8.93e-40	132
MsaG045300	AT5G62165.7	46.259	147	76	2	1	145	1	146	8.93e-40	132
MsaG045300	AT5G62165.8	46.259	147	76	2	1	145	1	146	8.93e-40	132
MsaG045300	AT5G62165.13	46.259	147	76	2	1	145	1	146	8.93e-40	132
MsaG045300	AT3G57230.1	43.605	172	93	4	1	170	1	170	2.24e-39	134
MsaG045300	AT3G57230.4	43.605	172	93	4	1	170	1	170	2.24e-39	134
MsaG045300	AT3G58780.4	48.000	150	71	3	1	146	16	162	2.32e-39	135
MsaG045300	AT4G37940.1	38.953	172	103	2	1	171	1	171	5.33e-38	130
MsaG045300	AT3G57230.2	46.043	139	73	2	1	138	1	138	2.67e-37	126
MsaG045300	AT5G10140.2	45.205	146	74	1	1	146	1	140	3.11e-37	126
MsaG045300	AT5G10140.4	44.079	152	79	1	1	152	1	146	6.10e-37	126
MsaG045300	AT5G10140.3	45.205	146	74	1	1	146	1	140	6.68e-37	126
MsaG045300	AT5G10140.1	45.205	146	74	1	1	146	1	140	1.14e-36	126
MsaG045300	AT2G14210.2	39.286	168	101	1	1	167	1	168	1.64e-35	124
MsaG045300	AT2G14210.1	39.286	168	101	1	1	167	1	168	1.67e-35	124
MsaG045300	AT3G57390.3	41.848	184	95	4	1	174	1	182	3.31e-35	123
MsaG045300	AT4G37940.3	43.165	139	77	2	1	138	1	138	5.46e-35	121
MsaG045300	AT3G57390.1	41.989	181	93	4	1	171	1	179	7.29e-35	123
MsaG045300	AT1G71692.1	41.176	187	91	3	1	173	1	182	2.82e-34	120
MsaG045300	AT4G37940.4	43.165	139	77	2	1	138	1	138	3.22e-34	120
MsaG045300	AT4G24540.1	41.954	174	98	2	1	172	1	173	7.72e-34	119
MsaG045300	AT5G65060.1	37.143	175	104	1	1	175	1	169	1.70e-33	118
MsaG045300	AT2G22630.1	38.506	174	101	3	1	171	1	171	1.79e-33	119
MsaG045300	AT2G22630.2	38.506	174	101	3	1	171	1	171	1.79e-33	119
MsaG045300	AT5G65060.3	37.647	170	100	1	1	170	1	164	4.15e-33	117
MsaG045300	AT5G51870.1	39.264	163	95	2	1	160	1	162	4.19e-33	117
MsaG045300	AT5G65050.3	40.678	177	95	4	1	175	1	169	5.22e-33	116
MsaG045300	AT5G51870.4	39.264	163	95	2	1	160	1	162	5.94e-33	117
MsaG045300	AT5G51870.3	38.690	168	89	3	1	160	11	172	8.30e-33	117
MsaG045300	AT5G65050.2	41.765	170	93	3	1	170	1	164	9.90e-33	115
MsaG045300	AT5G65050.5	38.857	175	90	2	1	175	1	158	3.68e-32	114
MsaG045300	AT5G62165.14	52.294	109	49	2	1	109	1	106	4.00e-32	111
MsaG045300	AT5G65070.1	40.000	170	96	1	1	170	1	164	1.11e-31	113
MsaG045300	AT2G22540.3	39.053	169	100	2	1	167	1	168	1.31e-31	114
MsaG045300	AT2G22540.1	39.053	169	100	2	1	167	1	168	1.31e-31	114
MsaG045300	AT5G13790.2	41.714	175	91	3	1	171	1	168	3.23e-31	114
MsaG045300	AT5G51870.2	39.735	151	77	3	1	143	1	145	3.65e-31	111
MsaG045300	AT5G13790.1	40.936	171	95	2	1	171	1	165	4.68e-31	113
MsaG045300	AT5G65060.2	36.571	175	94	2	1	175	1	158	4.90e-31	111
MsaG045300	AT5G51870.5	39.073	151	78	3	1	143	24	168	6.02e-31	111
MsaG045300	AT5G65050.1	41.212	165	84	5	1	160	1	157	2.86e-30	109
MsaG045300	AT5G51860.2	38.125	160	93	4	1	156	1	158	3.32e-30	109
MsaG045300	AT5G51860.1	37.500	160	94	4	1	156	1	158	3.49e-30	110
MsaG045300	AT5G65080.3	40.000	155	87	2	1	155	8	156	1.42e-29	107
MsaG045300	AT5G20240.2	42.657	143	78	2	1	142	1	140	2.59e-29	105
MsaG045300	AT5G20240.1	41.497	147	82	2	1	146	1	144	3.40e-29	107
MsaG045300	AT5G23260.2	38.323	167	101	2	1	166	1	166	7.98e-29	107
MsaG045300	AT5G23260.4	38.323	167	101	2	1	166	17	182	1.23e-28	107
MsaG045300	AT5G65070.4	41.781	146	79	1	1	146	1	140	1.77e-28	103
MsaG045300	AT2G22540.2	36.686	169	99	2	1	167	1	163	6.65e-28	104
MsaG045300	AT5G65070.2	34.146	205	98	3	1	174	1	199	6.12e-26	99.4
MsaG045300	AT5G23260.1	37.725	167	97	3	1	166	17	177	8.65e-26	99.8
MsaG045300	AT5G65080.2	38.608	158	82	3	1	154	8	154	1.43e-25	97.8
MsaG045300	AT1G77080.5	37.059	170	101	1	1	170	1	164	6.47e-25	95.1
MsaG045300	AT5G65070.3	33.981	206	98	3	1	174	1	200	7.67e-25	96.7
MsaG045300	AT1G77080.11	36.471	170	102	1	1	170	1	164	1.70e-24	94.4
MsaG045300	AT5G23260.3	40.288	139	81	2	1	138	1	138	2.07e-24	95.5
MsaG045300	AT5G65070.5	56.250	80	35	0	1	80	1	80	2.38e-24	94.7
MsaG045300	AT1G77080.4	36.471	170	102	1	1	170	1	164	2.59e-24	94.4
MsaG045300	AT3G54340.1	35.669	157	83	3	1	149	1	147	5.81e-24	94.4
MsaG045300	AT1G77080.2	37.647	170	96	3	1	170	1	160	8.33e-23	90.5
MsaG045300	AT1G31140.2	37.179	156	80	4	1	145	1	149	5.94e-22	88.6
MsaG045300	AT1G31140.1	37.662	154	80	4	1	145	1	147	8.79e-22	88.2
MsaG045300	AT1G77980.1	37.908	153	83	4	1	142	1	152	3.16e-21	89.0
MsaG045300	AT1G22130.1	54.286	70	32	0	1	70	1	70	1.78e-20	87.0
MsaG045300	AT1G77080.12	37.419	155	87	3	1	155	1	145	1.89e-20	83.2
MsaG045300	AT1G77080.8	32.984	191	107	4	1	170	1	191	9.75e-20	83.2
MsaG045300	AT1G69120.3	40.541	111	64	2	63	171	1	111	1.18e-18	79.7
MsaG045300	AT1G77950.3	51.429	70	34	0	1	70	1	70	2.69e-18	79.7
MsaG045300	AT1G77950.2	51.429	70	34	0	1	70	1	70	2.69e-18	79.7
MsaG045300	AT1G77950.1	51.429	70	34	0	1	70	1	70	2.69e-18	79.7
MsaG045300	AT1G77950.4	51.429	70	34	0	1	70	1	70	2.69e-18	79.7
MsaG045300	AT4G37435.1	57.895	57	24	0	1	57	1	57	5.04e-17	75.1
MsaG045300	AT1G18750.4	43.590	78	43	1	1	77	1	78	1.51e-16	76.3
MsaG045300	AT1G18750.1	43.590	78	43	1	1	77	1	78	1.72e-16	76.3
MsaG045300	AT1G18750.3	43.590	78	43	1	1	77	1	78	2.07e-16	76.3
MsaG045300	AT5G60910.2	35.965	114	65	2	63	171	1	111	2.73e-16	73.2
MsaG045300	AT1G01530.1	54.386	57	26	0	1	57	6	62	9.12e-16	72.8
MsaG045300	AT2G03060.3	44.872	78	42	1	1	77	1	78	6.29e-15	71.6
MsaG045300	AT2G03060.7	44.872	78	42	1	1	77	1	78	6.29e-15	71.6
MsaG045300	AT2G03060.1	44.872	78	42	1	1	77	1	78	6.29e-15	71.6
MsaG045300	AT2G03060.2	44.872	78	42	1	1	77	1	78	6.84e-15	71.6
MsaG045300	AT4G36590.1	46.575	73	35	1	2	74	7	75	1.83e-14	69.3
MsaG045300	AT1G69540.2	27.108	166	96	3	1	164	1	143	2.75e-14	70.1
MsaG045300	AT1G69540.1	27.108	166	96	3	1	164	1	143	2.76e-14	69.7
MsaG045300	AT1G72350.1	38.462	91	52	2	2	92	43	129	1.02e-13	67.0
MsaG045300	AT1G65360.1	46.552	58	31	0	1	58	6	63	1.72e-13	66.2
MsaG045300	AT3G04100.1	45.000	60	33	0	2	61	14	73	3.43e-13	65.5
MsaG045300	AT2G34440.1	43.103	58	33	0	1	58	1	58	6.34e-13	63.9
MsaG045300	AT5G60440.1	45.902	61	33	0	2	62	7	67	7.20e-13	65.5
MsaG045300	AT3G66656.1	44.828	58	32	0	1	58	1	58	7.20e-13	63.9
MsaG045300	AT1G29962.1	50.000	60	30	0	2	61	8	67	1.09e-12	63.5
MsaG045300	AT2G24840.1	29.518	166	92	5	1	144	62	224	1.26e-12	64.7
MsaG045300	AT1G47760.1	39.189	74	44	1	1	74	1	73	6.03e-12	61.6
MsaG045300	AT1G28460.1	48.333	60	31	0	2	61	8	67	6.47e-12	61.2

Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTTCAATCTCAAATATTCT+TGG	0.237440	8:-71054316	None:intergenic
AATGCTTTAGGAACCTTCTT+GGG	0.275687	8:+71054477	MsaT045300.1:intron
AACATTTACCAGAGTATCAT+TGG	0.339966	8:-71054173	None:intergenic
CGAGCAACTTGAAAATCATT+TGG	0.359293	8:+71054532	MsaT045300.1:CDS
TTCATAGAGTTTGCCACGGT+TGG	0.385936	8:-71051548	None:intergenic
AAATGCTTTAGGAACCTTCT+TGG	0.387253	8:+71054476	MsaT045300.1:intron
AACTAAGTGATCTTCACAAT+CGG	0.436840	8:+71057433	MsaT045300.1:CDS
CAAGTACAGTTATAATGAAC+TGG	0.445526	8:+71054135	MsaT045300.1:CDS
CCAGAGTATCATTGGCTGGT+TGG	0.458073	8:-71054165	None:intergenic
AGTATCATTGGCTGGTTGGT+TGG	0.465819	8:-71054161	None:intergenic
GATATTGCACAAATGAATAC+AGG	0.496917	8:+71054503	MsaT045300.1:CDS
TTTACCAGAGTATCATTGGC+TGG	0.506248	8:-71054169	None:intergenic
GTGCAATATCTTCCCCAAGA+AGG	0.512715	8:-71054490	None:intergenic
AAATAACGATCTGAGAAGTA+AGG	0.522802	8:+71057844	MsaT045300.1:CDS
ACTAAGTGATCTTCACAATC+GGG	0.530061	8:+71057434	MsaT045300.1:CDS
GCAACTTGAAAATCATTTGG+AGG	0.531635	8:+71054535	MsaT045300.1:CDS
TATATGCAGCTACAATCCGA+TGG	0.541973	8:+71059061	MsaT045300.1:intron
ATGAATTCAGTAGCACCTCC+TGG	0.543725	8:+71051566	MsaT045300.1:CDS
AAGAAATGGTGTACTCAAGA+AGG	0.552744	8:+71051474	MsaT045300.1:CDS
GTTCATTATAACTGTACTTG+TGG	0.559243	8:-71054132	None:intergenic
CCAACCAGCCAATGATACTC+TGG	0.559471	8:+71054165	MsaT045300.1:CDS
ATATAGCATGATGAAAACAT+TGG	0.571729	8:+71054102	MsaT045300.1:intron
ATGCTTTAGGAACCTTCTTG+GGG	0.577563	8:+71054478	MsaT045300.1:intron
CTTATCATCTTCTCCAACCG+TGG	0.584619	8:+71051535	MsaT045300.1:CDS
ATATGCAGCTACAATCCGAT+GGG	0.586179	8:+71059062	MsaT045300.1:intron
TTTACATCAGCAGAACCCAT+CGG	0.640734	8:-71059077	None:intergenic
ACTTAAGAATATAAGATCGA+CGG	0.644848	8:+71054562	MsaT045300.1:CDS
TGAATTCATAGAGTTTGCCA+CGG	0.664927	8:-71051552	None:intergenic
AAATCTTACAACGTTCACAA+AGG	0.680204	8:+71054348	MsaT045300.1:CDS
TAAGAATATAAGATCGACGG+AGG	0.706354	8:+71054565	MsaT045300.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	71051403	71059093	71051403	ID=MsaG045300
Chr8	mRNA	71051403	71059093	71051403	ID=MsaT045300.1;Parent=MsaG045300
Chr8	exon	71051403	71051587	71051403	ID=MsaT045300.1.exon1;Parent=MsaT045300.1
Chr8	CDS	71051403	71051587	71051403	ID=cds.MsaT045300.1;Parent=MsaT045300.1
Chr8	exon	71054108	71054186	71054108	ID=MsaT045300.1.exon2;Parent=MsaT045300.1
Chr8	CDS	71054108	71054186	71054108	ID=cds.MsaT045300.1;Parent=MsaT045300.1
Chr8	exon	71054311	71054369	71054311	ID=MsaT045300.1.exon3;Parent=MsaT045300.1
Chr8	CDS	71054311	71054369	71054311	ID=cds.MsaT045300.1;Parent=MsaT045300.1
Chr8	exon	71054487	71054586	71054487	ID=MsaT045300.1.exon4;Parent=MsaT045300.1
Chr8	CDS	71054487	71054586	71054487	ID=cds.MsaT045300.1;Parent=MsaT045300.1
Chr8	exon	71057414	71057455	71057414	ID=MsaT045300.1.exon5;Parent=MsaT045300.1
Chr8	CDS	71057414	71057455	71057414	ID=cds.MsaT045300.1;Parent=MsaT045300.1
Chr8	exon	71057824	71057865	71057824	ID=MsaT045300.1.exon6;Parent=MsaT045300.1
Chr8	CDS	71057824	71057865	71057824	ID=cds.MsaT045300.1;Parent=MsaT045300.1
Chr8	exon	71059070	71059093	71059070	ID=MsaT045300.1.exon7;Parent=MsaT045300.1
Chr8	CDS	71059070	71059093	71059070	ID=cds.MsaT045300.1;Parent=MsaT045300.1

Gene Sequence

>MsaT045300.1

ATGGGAAGAGGGAGAGTTGAACTAAAGAGAATAGAGAACAAAATTAATAGACAAGTCACTTTTGCTAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAACCGTGGCAAACTCTATGAATTCAGTAGCACCTCCTGCATGATGAAAACATTGGAGAAATACCACAAGTACAGTTATAATGAACTGGAGACCAACCAACCAGCCAATGATACTCTGAATTACCAAGAATATTTGAGATTGAAAGCACATGTAGAAATCTTACAACGTTCACAAAGGAACCTTCTTGGGGAAGATATTGCACAAATGAATACAGGTGAGCTCGAGCAACTTGAAAATCATTTGGAGGCAGCACTTAAGAATATAAGATCGACGGAGACTCAATTCATGCTTGATCAACTAAGTGATCTTCACAATCGGGAAACGGTGCTTGTTGAAACAAATAACGATCTGAGAAGTAAGCTACAATCCGATGGGTTCTGCTGA

Protein sequence

>MsaT045300.1

MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYNELETNQPANDTLNYQEYLRLKAHVEILQRSQRNLLGEDIAQMNTGELEQLENHLEAALKNIRSTETQFMLDQLSDLHNRETVLVETNNDLRSKLQSDGFC*