AlfalfaGEDB | MsaG045302

M. sativa ssp. caerulea / MsaG045302

KEGG: K09264
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045302	AFU81365.1	100.000	228	0	0	10	237	1	228	1.89e-166	468

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045302	sp\|Q38876\|AGL8_ARATH	65.823	237	78	1	1	234	1	237	4.67e-105	306

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045302	tr\|K4JDU9\|K4JDU9_MEDSA	100.000	228	0	0	10	237	1	228	9.01e-167	468

TFs/TRs:

Gene ID	Type	Classification
MsaG045302	TF	MADS-MIKC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000377	MsaG045302	0.812849	5.932151e-51	1.086471e-48
MsaG000570	MsaG045302	0.831459	2.976216e-55	8.982254e-53
MsaG003113	MsaG045302	0.821560	6.653528e-53	1.525026e-50
MsaG004420	MsaG045302	0.820009	1.506388e-52	3.313931e-50
MsaG004756	MsaG045302	0.813628	4.008151e-51	7.485501e-49
MsaG004956	MsaG045302	0.802812	7.897657e-49	1.138167e-46
MsaG005257	MsaG045302	0.806419	1.407081e-49	2.205488e-47
MsaG005769	MsaG045302	0.831916	2.298502e-55	7.030793e-53
MsaG006563	MsaG045302	0.837034	1.208323e-56	4.302513e-54
MsaG007762	MsaG045302	0.809116	3.783683e-50	6.325155e-48
MsaG010148	MsaG045302	0.830381	5.456279e-55	1.596410e-52
MsaG010302	MsaG045302	0.817354	5.991439e-52	1.229920e-49
MsaG012013	MsaG045302	0.809801	2.701701e-50	4.591693e-48
MsaG044570	MsaG045302	0.835602	2.783184e-56	9.492292e-54
MsaG045234	MsaG045302	0.804913	2.904025e-49	4.393819e-47
MsaG045302	MsaG045600	0.806292	1.496638e-49	2.338768e-47
MsaG045302	MsaG003008	0.825683	7.284976e-54	1.867438e-51
MsaG045302	MsaG008213	0.800054	2.883141e-48	3.902935e-46
MsaG045302	MsaG013515	0.831864	2.367631e-55	7.231147e-53
MsaG045302	MsaG031589	0.810100	2.331262e-50	3.990795e-48
MsaG045302	MsaG035309	0.811211	1.344188e-50	2.364396e-48
MsaG045302	MsaG043789	0.836537	1.615614e-56	5.667073e-54
MsaG045302	MsaG042308	0.807569	8.058183e-50	1.297812e-47
MsaG015012	MsaG045302	0.806506	1.349227e-49	2.119115e-47
MsaG017957	MsaG045302	0.842761	3.953417e-58	1.684644e-55
MsaG019616	MsaG045302	0.803021	7.151816e-49	1.035680e-46
MsaG020337	MsaG045302	0.822844	3.362394e-53	7.976698e-51
MsaG020607	MsaG045302	0.807336	9.022418e-50	1.445086e-47
MsaG021274	MsaG045302	0.807537	8.184340e-50	1.317147e-47
MsaG021317	MsaG045302	0.818443	3.410974e-52	7.201302e-50
MsaG021422	MsaG045302	0.829467	9.087572e-55	2.590147e-52
MsaG022554	MsaG045302	0.812656	6.534879e-51	1.191114e-48
MsaG023972	MsaG045302	0.812495	7.083826e-51	1.286068e-48
MsaG026756	MsaG045302	0.826118	5.751437e-54	1.492260e-51
MsaG027935	MsaG045302	0.812552	6.882733e-51	1.251338e-48
MsaG028522	MsaG045302	0.815876	1.279862e-51	2.529600e-49
MsaG032424	MsaG045302	0.810832	1.622814e-50	2.828116e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045302	MtrunA17_Chr4g0061691	94.515	237	8	1	1	237	1	232	2.84e-164	453
MsaG045302	MtrunA17_Chr5g0420081	70.330	182	54	0	1	182	1	182	2.35e-90	266
MsaG045302	MtrunA17_Chr8g0366231	67.281	217	65	2	1	211	1	217	5.52e-90	265
MsaG045302	MtrunA17_Chr7g0220121	52.756	254	95	4	1	232	1	251	5.34e-79	238
MsaG045302	MtrunA17_Chr2g0308271	61.878	181	66	1	55	232	26	206	1.76e-69	212
MsaG045302	MtrunA17_Chr6g0455511	59.195	174	70	1	1	174	1	173	1.85e-63	198
MsaG045302	MtrunA17_Chr7g0220111	46.032	252	113	4	1	232	1	249	1.37e-60	191
MsaG045302	MtrunA17_Chr5g0420091	46.053	228	106	3	1	227	1	212	1.72e-60	189
MsaG045302	MtrunA17_Chr3g0122251	56.180	178	69	2	1	172	1	175	3.69e-59	187
MsaG045302	MtrunA17_Chr4g0061671	53.448	174	77	2	1	173	1	171	4.93e-59	184
MsaG045302	MtrunA17_Chr8g0351051	56.977	172	73	1	1	172	1	171	3.83e-58	184
MsaG045302	MtrunA17_Chr6g0474371	54.335	173	78	1	1	172	1	173	3.98e-53	170
MsaG045302	MtrunA17_Chr2g0279821	46.409	181	95	2	1	181	1	179	2.66e-49	161
MsaG045302	MtrunA17_Chr3g0097101	39.130	230	127	3	1	220	16	242	1.00e-47	157
MsaG045302	MtrunA17_Chr7g0246431	49.412	170	85	1	1	170	1	169	2.39e-47	155
MsaG045302	MtrunA17_Chr1g0204111	48.066	181	76	4	1	172	17	188	6.39e-46	153
MsaG045302	MtrunA17_Chr2g0284911	43.503	177	99	1	1	177	16	191	3.41e-45	151
MsaG045302	MtrunA17_Chr8g0380021	39.524	210	116	3	1	205	17	220	1.80e-44	149
MsaG045302	MtrunA17_Chr8g0351031	45.349	172	92	2	1	171	1	171	2.67e-44	148
MsaG045302	MtrunA17_Chr5g0411691	44.186	172	93	2	1	172	1	169	4.47e-44	148
MsaG045302	MtrunA17_Chr4g0057151	48.000	175	80	4	1	170	1	169	1.51e-42	143
MsaG045302	MtrunA17_Chr3g0077501	41.089	202	115	3	1	202	1	198	2.23e-42	143
MsaG045302	MtrunA17_Chr4g0049541	44.865	185	91	4	1	179	1	180	1.17e-41	141
MsaG045302	MtrunA17_Chr8g0351041	44.444	162	88	2	1	161	1	161	3.13e-40	135
MsaG045302	MtrunA17_Chr5g0412461	46.286	175	87	4	1	172	1	171	9.43e-38	131
MsaG045302	MtrunA17_Chr5g0412271	44.571	175	90	4	1	172	1	171	1.40e-36	128
MsaG045302	MtrunA17_Chr1g0164791	41.765	170	93	4	1	165	1	169	1.84e-36	128
MsaG045302	MtrunA17_Chr2g0308251	73.494	83	21	1	1	83	1	82	2.61e-36	123
MsaG045302	MtrunA17_Chr4g0018421	38.764	178	102	2	1	174	1	175	6.89e-35	123
MsaG045302	MtrunA17_Chr4g0020221	43.503	177	95	3	1	174	1	175	3.98e-34	123
MsaG045302	MtrunA17_Chr3g0125241	44.898	147	75	2	1	146	26	167	1.88e-33	120
MsaG045302	MtrunA17_Chr5g0427401	35.745	235	131	6	1	228	1	222	3.93e-33	119
MsaG045302	MtrunA17_Chr3g0142191	38.144	194	114	2	1	193	1	189	4.55e-31	114
MsaG045302	MtrunA17_Chr1g0159661	42.771	166	85	5	1	165	1	157	1.04e-30	112
MsaG045302	MtrunA17_Chr4g0049901	39.175	194	109	4	1	191	27	214	5.42e-30	112
MsaG045302	MtrunA17_Chr7g0246381	80.000	60	12	0	1	60	1	60	1.15e-28	103
MsaG045302	MtrunA17_Chr5g0404951	39.779	181	84	6	1	168	1	169	1.33e-28	108
MsaG045302	MtrunA17_Chr8g0377561	82.456	57	10	0	1	57	1	57	7.18e-28	102
MsaG045302	MtrunA17_Chr1g0173161	63.768	69	25	0	1	69	1	69	9.50e-25	93.6
MsaG045302	MtrunA17_Chr8g0377551	49.091	110	55	1	63	171	1	110	2.15e-23	93.2
MsaG045302	MtrunA17_Chr3g0134451	61.429	70	27	0	1	70	1	70	2.19e-22	93.2
MsaG045302	MtrunA17_Chr5g0427921	59.322	59	24	0	1	59	1	59	2.46e-20	81.6
MsaG045302	MtrunA17_Chr4g0044071	60.345	58	23	0	1	58	1	58	1.64e-19	80.9
MsaG045302	MtrunA17_Chr2g0325971	50.704	71	32	2	2	70	7	76	6.88e-19	82.4
MsaG045302	MtrunA17_Chr5g0425191	62.069	58	22	0	1	58	1	58	7.71e-19	79.0
MsaG045302	MtrunA17_Chr1g0208561	50.704	71	32	2	2	70	7	76	7.78e-19	82.0
MsaG045302	MtrunA17_Chr3g0089141	50.704	71	32	2	2	70	7	76	8.45e-19	82.0
MsaG045302	MtrunA17_Chr2g0292791	50.725	69	33	1	2	70	9	76	2.32e-18	80.9
MsaG045302	MtrunA17_Chr3g0099421	44.444	90	47	1	2	88	34	123	3.20e-18	80.9
MsaG045302	MtrunA17_Chr1g0166611	75.000	44	11	0	16	59	20	63	8.18e-18	77.0
MsaG045302	MtrunA17_Chr3g0099411	49.275	69	34	1	2	70	9	76	9.24e-18	79.0
MsaG045302	MtrunA17_Chr1g0206721	49.275	69	34	1	2	70	9	76	1.95e-17	78.6
MsaG045302	MtrunA17_Chr8g0355091	49.275	69	34	1	2	70	9	76	1.99e-17	78.6
MsaG045302	MtrunA17_Chr1g0206701	49.275	69	34	1	2	70	9	76	2.05e-17	78.6
MsaG045302	MtrunA17_Chr1g0208581	47.887	71	34	2	2	70	7	76	2.60e-17	78.2
MsaG045302	MtrunA17_Chr1g0187361	33.333	159	71	4	2	160	9	132	3.02e-17	78.2
MsaG045302	MtrunA17_Chr5g0419601	51.429	70	33	1	1	70	8	76	4.23e-17	77.4
MsaG045302	MtrunA17_Chr1g0149391	50.725	69	33	1	2	70	9	76	5.03e-17	77.4
MsaG045302	MtrunA17_Chr1g0188671	50.725	69	33	1	2	70	47	114	1.29e-16	77.0
MsaG045302	MtrunA17_Chr3g0085241	34.337	166	91	7	1	149	40	204	1.40e-16	76.3
MsaG045302	MtrunA17_Chr2g0317451	50.725	69	33	1	2	70	9	76	1.52e-16	76.3
MsaG045302	MtrunA17_Chr2g0317481	50.725	69	33	1	2	70	9	76	1.57e-16	75.9
MsaG045302	MtrunA17_Chr4g0052081	39.785	93	50	2	1	88	1	92	1.60e-16	74.7
MsaG045302	MtrunA17_Chr8g0379021	31.176	170	105	6	2	168	12	172	2.28e-16	74.3
MsaG045302	MtrunA17_Chr1g0206991	46.377	69	36	1	2	70	9	76	2.94e-16	74.3
MsaG045302	MtrunA17_Chr4g0052061	45.714	70	37	1	1	70	1	69	5.76e-16	72.8
MsaG045302	MtrunA17_Chr4g0018951	34.783	138	78	5	16	147	26	157	1.70e-15	71.6
MsaG045302	MtrunA17_Chr2g0300421	49.296	71	33	2	2	70	7	76	1.86e-15	72.0
MsaG045302	MtrunA17_Chr3g0089151	46.377	69	36	1	2	70	9	76	3.35e-15	70.1
MsaG045302	MtrunA17_Chr5g0422421	49.275	69	34	1	2	70	9	76	3.38e-15	72.4
MsaG045302	MtrunA17_Chr4g0060841	44.304	79	43	1	1	78	1	79	4.52e-15	73.6
MsaG045302	MtrunA17_Chr8g0357771	43.662	71	37	1	1	68	1	71	4.82e-15	70.9
MsaG045302	MtrunA17_Chr5g0422941	47.826	69	35	1	2	70	9	76	5.00e-15	72.0
MsaG045302	MtrunA17_Chr1g0180591	35.514	107	61	3	1	102	1	104	6.18e-15	70.5
MsaG045302	MtrunA17_Chr1g0175611	33.962	106	66	3	1	103	1	105	9.28e-15	69.7
MsaG045302	MtrunA17_Chr3g0119901	44.286	70	38	1	1	70	8	76	1.43e-14	70.1
MsaG045302	MtrunA17_Chr8g0376821	40.000	70	41	1	1	70	1	69	2.48e-14	68.9
MsaG045302	MtrunA17_Chr2g0300441	45.070	71	36	2	2	70	7	76	3.33e-14	69.7
MsaG045302	MtrunA17_Chr5g0417661	50.943	53	26	0	1	53	56	108	7.10e-14	66.2
MsaG045302	MtrunA17_Chr1g0169761	40.000	70	41	1	1	70	1	69	7.33e-14	67.8
MsaG045302	MtrunA17_Chr2g0333981	44.286	70	38	1	1	70	11	79	9.31e-14	67.4
MsaG045302	MtrunA17_Chr1g0206691	50.000	60	29	1	11	70	1	59	1.60e-13	67.4
MsaG045302	MtrunA17_Chr1g0175601	40.000	70	41	1	1	70	1	69	3.01e-13	65.9
MsaG045302	MtrunA17_Chr5g0427961	35.135	111	71	1	62	172	5	114	3.76e-13	65.5
MsaG045302	MtrunA17_Chr4g0074101	37.143	70	43	1	1	70	1	69	1.00e-12	64.7
MsaG045302	MtrunA17_Chr6g0457851	28.889	180	100	6	1	164	11	178	2.32e-12	65.5
MsaG045302	MtrunA17_Chr3g0111841	50.000	60	29	1	8	67	2	60	2.54e-12	60.5
MsaG045302	MtrunA17_Chr8g0356071	35.714	70	44	1	1	70	1	69	1.70e-11	60.8
MsaG045302	MtrunA17_Chr6g0449851	48.980	49	25	0	1	49	1	49	4.27e-11	61.6
MsaG045302	MtrunA17_Chr1g0212151	29.448	163	89	6	1	146	1	154	5.52e-11	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045302	AT5G60910.1	65.823	237	78	1	1	234	1	237	4.75e-106	306
MsaG045302	AT1G69120.2	72.067	179	50	0	1	179	1	179	4.18e-92	271
MsaG045302	AT1G69120.1	72.067	179	50	0	1	179	1	179	2.16e-91	270
MsaG045302	AT1G26310.1	62.621	206	69	3	1	199	1	205	8.03e-86	255
MsaG045302	AT3G30260.1	49.798	247	104	4	1	231	1	243	2.33e-63	198
MsaG045302	AT5G15800.1	58.046	174	73	0	1	174	1	174	2.72e-60	190
MsaG045302	AT5G60910.2	57.143	175	72	1	63	234	1	175	3.51e-60	187
MsaG045302	AT5G15800.2	58.046	174	73	0	1	174	1	174	5.23e-60	190
MsaG045302	AT3G02310.1	45.600	250	118	5	1	232	1	250	2.07e-59	188
MsaG045302	AT3G02310.2	56.725	171	74	0	1	171	1	171	5.89e-58	182
MsaG045302	AT1G24260.2	53.591	181	73	2	1	174	1	177	2.36e-57	183
MsaG045302	AT1G24260.1	54.545	176	78	1	1	174	1	176	2.98e-57	182
MsaG045302	AT1G24260.3	56.707	164	60	2	1	157	1	160	5.15e-55	176
MsaG045302	AT2G45650.1	54.857	175	71	3	1	172	1	170	1.22e-54	176
MsaG045302	AT2G03710.1	38.462	260	130	6	1	232	1	258	9.87e-52	169
MsaG045302	AT2G03710.2	47.253	182	94	2	1	181	1	181	2.76e-51	167
MsaG045302	AT3G61120.1	49.735	189	90	3	1	188	1	185	7.95e-51	166
MsaG045302	AT2G03710.3	48.555	173	87	2	1	172	1	172	1.09e-50	164
MsaG045302	AT1G69120.3	64.103	117	42	0	63	179	1	117	7.18e-47	154
MsaG045302	AT4G09960.1	40.306	196	115	2	1	195	1	195	4.96e-44	148
MsaG045302	AT4G09960.6	40.306	196	115	2	1	195	2	196	5.75e-44	148
MsaG045302	AT4G09960.5	40.513	195	114	2	1	194	11	204	6.69e-44	148
MsaG045302	AT4G37940.1	42.697	178	100	2	1	178	1	176	1.35e-43	147
MsaG045302	AT4G09960.3	40.306	196	115	2	1	195	27	221	1.92e-43	147
MsaG045302	AT3G58780.1	37.850	214	128	2	1	214	16	224	3.16e-43	146
MsaG045302	AT3G58780.5	37.850	214	128	2	1	214	22	230	3.51e-43	146
MsaG045302	AT4G18960.1	38.942	208	119	3	2	202	18	224	5.52e-43	146
MsaG045302	AT2G14210.1	46.429	168	89	1	1	168	1	167	9.13e-43	145
MsaG045302	AT2G14210.2	46.429	168	89	1	1	168	1	167	1.14e-42	145
MsaG045302	AT2G45660.1	45.652	184	89	4	1	179	1	178	2.90e-42	143
MsaG045302	AT2G42830.1	41.714	175	101	1	1	175	16	189	1.63e-41	142
MsaG045302	AT3G58780.2	37.383	214	122	2	1	214	16	217	2.06e-41	142
MsaG045302	AT3G57230.1	42.857	175	92	3	1	172	1	170	3.18e-41	141
MsaG045302	AT3G57230.4	42.857	175	92	3	1	172	1	170	3.18e-41	141
MsaG045302	AT4G37940.4	42.690	171	96	2	1	171	1	169	4.48e-41	140
MsaG045302	AT4G09960.2	46.853	143	75	1	1	143	1	142	3.05e-40	138
MsaG045302	AT2G42830.2	41.808	177	100	2	1	175	16	191	5.11e-40	138
MsaG045302	AT4G37940.3	47.222	144	74	2	1	144	1	142	8.05e-40	135
MsaG045302	AT4G09960.4	39.500	200	115	3	1	195	96	294	8.50e-40	140
MsaG045302	AT3G58780.3	34.454	238	128	2	1	214	16	249	1.45e-39	138
MsaG045302	AT4G11880.2	47.205	161	76	2	1	157	1	156	2.21e-39	134
MsaG045302	AT4G11880.3	47.205	161	76	2	1	157	1	156	2.21e-39	134
MsaG045302	AT2G45660.2	46.951	164	76	4	1	159	1	158	2.81e-39	134
MsaG045302	AT3G57390.3	41.899	179	96	2	1	172	1	178	5.26e-39	135
MsaG045302	AT3G57390.1	41.899	179	96	2	1	172	1	178	1.12e-38	135
MsaG045302	AT4G11880.4	45.714	175	86	2	1	171	1	170	5.59e-38	132
MsaG045302	AT4G11880.1	45.714	175	86	2	1	171	1	170	5.59e-38	132
MsaG045302	AT3G57230.2	45.890	146	71	3	1	143	1	141	7.13e-38	129
MsaG045302	AT4G22950.2	43.429	175	91	3	1	172	1	170	1.03e-37	130
MsaG045302	AT5G13790.1	45.977	174	86	2	1	174	1	166	2.48e-37	132
MsaG045302	AT2G22630.1	40.223	179	103	4	1	178	1	176	4.71e-37	130
MsaG045302	AT2G22630.2	40.223	179	103	4	1	178	1	176	4.71e-37	130
MsaG045302	AT5G13790.2	45.763	177	85	3	1	174	1	169	6.13e-37	131
MsaG045302	AT4G24540.1	38.197	233	127	6	1	230	1	219	7.14e-37	129
MsaG045302	AT4G22950.3	43.678	174	90	3	1	171	1	169	1.06e-36	129
MsaG045302	AT4G22950.1	43.678	174	90	3	1	171	1	169	1.06e-36	129
MsaG045302	AT3G58780.4	32.794	247	128	3	1	214	16	257	2.35e-36	130
MsaG045302	AT5G62165.3	40.449	178	91	3	1	171	1	170	1.07e-35	126
MsaG045302	AT5G62165.1	40.449	178	91	3	1	171	1	170	1.07e-35	126
MsaG045302	AT5G62165.2	40.449	178	91	3	1	171	1	170	1.07e-35	126
MsaG045302	AT2G22540.3	41.622	185	97	4	1	182	1	177	1.50e-35	126
MsaG045302	AT2G22540.1	41.622	185	97	4	1	182	1	177	1.50e-35	126
MsaG045302	AT5G51870.1	40.000	165	91	3	1	161	1	161	3.00e-35	125
MsaG045302	AT5G51860.2	37.989	179	103	2	1	175	1	175	4.08e-35	124
MsaG045302	AT5G51870.4	38.889	180	101	4	1	175	1	176	5.39e-35	124
MsaG045302	AT5G51870.3	38.889	180	101	4	1	175	11	186	6.90e-35	124
MsaG045302	AT5G51870.2	42.384	151	79	3	1	147	1	147	1.68e-34	122
MsaG045302	AT5G23260.2	36.765	204	109	4	1	196	1	192	1.93e-34	124
MsaG045302	AT5G62165.17	40.244	164	83	3	1	157	1	156	2.49e-34	120
MsaG045302	AT5G62165.12	40.244	164	83	3	1	157	1	156	2.49e-34	120
MsaG045302	AT5G62165.11	40.244	164	83	3	1	157	1	156	2.49e-34	120
MsaG045302	AT1G71692.1	41.989	181	98	1	1	174	1	181	2.64e-34	122
MsaG045302	AT5G23260.4	36.765	204	109	4	1	196	17	208	3.14e-34	124
MsaG045302	AT5G51870.5	42.384	151	79	3	1	147	24	170	4.38e-34	121
MsaG045302	AT5G51860.1	38.922	167	94	2	1	163	1	163	4.46e-34	122
MsaG045302	AT2G22540.2	40.541	185	94	4	1	182	1	172	2.44e-33	120
MsaG045302	AT5G62165.6	39.241	158	81	3	1	151	1	150	3.68e-33	117
MsaG045302	AT5G62165.9	39.241	158	81	3	1	151	1	150	3.68e-33	117
MsaG045302	AT5G62165.7	39.241	158	81	3	1	151	1	150	3.68e-33	117
MsaG045302	AT5G62165.8	39.241	158	81	3	1	151	1	150	3.68e-33	117
MsaG045302	AT5G62165.13	39.241	158	81	3	1	151	1	150	3.68e-33	117
MsaG045302	AT5G65060.1	38.286	175	100	2	1	175	1	167	1.58e-32	117
MsaG045302	AT5G65060.3	38.372	172	98	2	1	172	1	164	2.23e-32	117
MsaG045302	AT5G62165.10	39.394	165	85	3	1	158	1	157	3.59e-32	116
MsaG045302	AT5G62165.4	39.394	165	85	3	1	158	1	157	3.59e-32	116
MsaG045302	AT5G65080.3	40.404	198	102	4	1	198	8	189	1.31e-31	115
MsaG045302	AT5G65050.2	38.150	173	97	3	1	172	1	164	2.36e-31	114
MsaG045302	AT5G65070.1	41.379	174	90	3	1	172	1	164	2.40e-31	114
MsaG045302	AT5G65050.3	38.068	176	99	3	1	175	1	167	3.50e-31	114
MsaG045302	AT5G65060.2	37.714	175	90	3	1	175	1	156	8.77e-31	112
MsaG045302	AT5G23260.1	36.275	204	105	5	1	196	17	203	1.08e-30	114
MsaG045302	AT5G20240.2	41.333	150	80	4	1	148	1	144	7.22e-30	109
MsaG045302	AT5G65050.5	37.500	176	89	3	1	175	1	156	8.63e-30	110
MsaG045302	AT5G20240.1	41.611	149	79	4	1	147	1	143	1.62e-29	110
MsaG045302	AT5G10140.4	37.580	157	90	2	1	157	1	149	1.91e-29	109
MsaG045302	AT5G10140.1	36.364	187	111	2	1	187	1	179	3.99e-29	108
MsaG045302	AT3G54340.1	36.842	171	88	3	1	163	1	159	4.86e-29	109
MsaG045302	AT5G10140.2	38.372	172	98	2	1	172	1	164	8.23e-29	107
MsaG045302	AT5G65070.2	37.949	195	98	4	1	172	1	195	1.75e-28	108
MsaG045302	AT5G10140.3	37.433	187	106	3	1	187	1	176	1.99e-28	106
MsaG045302	AT1G77080.5	39.429	175	98	3	1	175	1	167	2.37e-28	106
MsaG045302	AT5G23260.3	38.608	158	79	3	1	150	1	148	3.10e-28	107
MsaG045302	AT5G65080.2	40.488	205	105	5	1	198	8	202	7.03e-28	105
MsaG045302	AT1G77080.11	38.953	172	97	3	1	172	1	164	8.02e-28	104
MsaG045302	AT5G65050.1	38.854	157	86	3	1	156	1	148	9.08e-28	104
MsaG045302	AT1G77080.4	38.953	172	97	3	1	172	1	164	4.43e-27	103
MsaG045302	AT5G65070.4	43.448	145	70	3	1	143	1	135	1.24e-26	100
MsaG045302	AT5G65070.5	35.556	180	93	3	1	157	1	180	1.27e-25	100
MsaG045302	AT5G65070.3	35.922	206	88	5	1	172	1	196	1.60e-25	100
MsaG045302	AT5G62165.14	61.111	72	27	1	1	72	1	71	5.15e-25	95.5
MsaG045302	AT1G77080.8	35.204	196	98	5	1	172	1	191	3.99e-24	96.3
MsaG045302	AT1G77080.2	38.953	172	93	4	1	172	1	160	6.30e-24	95.1
MsaG045302	AT1G77980.1	35.437	206	118	8	1	196	1	201	8.30e-23	95.1
MsaG045302	AT1G31140.2	37.255	153	88	3	1	148	1	150	2.37e-22	91.7
MsaG045302	AT1G31140.1	36.424	151	90	3	1	148	1	148	2.39e-21	89.0
MsaG045302	AT1G77080.12	38.994	159	85	4	1	159	1	147	3.28e-20	84.0
MsaG045302	AT1G22130.1	48.864	88	43	1	1	86	1	88	6.91e-20	87.0
MsaG045302	AT1G77950.3	48.864	88	43	1	1	86	1	88	2.21e-19	84.3
MsaG045302	AT1G77950.2	48.864	88	43	1	1	86	1	88	2.21e-19	84.3
MsaG045302	AT1G77950.1	48.864	88	43	1	1	86	1	88	2.21e-19	84.3
MsaG045302	AT1G77950.4	48.864	88	43	1	1	86	1	88	2.21e-19	84.3
MsaG045302	AT1G18750.4	40.506	79	46	1	1	78	1	79	1.51e-16	78.2
MsaG045302	AT2G34440.1	35.238	105	64	3	1	105	1	101	1.52e-16	75.1
MsaG045302	AT4G37435.1	29.609	179	100	5	1	168	1	164	1.69e-16	75.1
MsaG045302	AT1G18750.1	40.506	79	46	1	1	78	1	79	1.79e-16	78.2
MsaG045302	AT1G18750.3	40.506	79	46	1	1	78	1	79	2.13e-16	77.8
MsaG045302	AT1G01530.1	46.377	69	36	1	1	69	6	73	1.34e-15	73.9
MsaG045302	AT1G65360.1	42.466	73	41	1	1	73	6	77	1.81e-15	73.2
MsaG045302	AT4G36590.1	41.892	74	42	1	2	75	7	79	9.06e-15	71.6
MsaG045302	AT2G24840.1	44.286	70	38	1	1	70	62	130	1.03e-14	72.0
MsaG045302	AT5G60440.1	43.478	69	38	1	2	70	7	74	1.90e-14	71.6
MsaG045302	AT2G03060.3	40.506	79	46	1	1	78	1	79	4.40e-14	71.2
MsaG045302	AT2G03060.7	40.506	79	46	1	1	78	1	79	4.40e-14	71.2
MsaG045302	AT2G03060.1	40.506	79	46	1	1	78	1	79	4.40e-14	71.2
MsaG045302	AT2G03060.2	40.506	79	46	1	1	78	1	79	5.63e-14	70.9
MsaG045302	AT4G37940.2	35.345	116	74	1	63	178	1	115	1.15e-13	67.0
MsaG045302	AT3G66656.1	39.437	71	42	1	1	71	1	70	2.46e-13	66.6
MsaG045302	AT2G26320.1	42.045	88	39	3	1	76	17	104	7.04e-13	63.5
MsaG045302	AT1G69540.1	38.462	78	48	0	1	78	1	78	8.18e-13	67.4
MsaG045302	AT1G47760.1	37.838	74	45	1	1	74	1	73	1.03e-12	65.1
MsaG045302	AT1G69540.2	50.943	53	26	0	1	53	1	53	1.17e-12	67.0
MsaG045302	AT3G04100.1	36.842	76	47	1	2	77	14	88	1.55e-12	65.1
MsaG045302	AT1G72350.1	42.254	71	38	1	2	72	43	110	3.71e-12	64.3
MsaG045302	AT4G18960.3	25.698	179	126	2	48	219	49	227	9.05e-12	63.2
MsaG045302	AT4G18960.2	25.698	179	126	2	48	219	49	227	9.05e-12	63.2
MsaG045302	AT1G29962.1	40.580	69	40	1	2	70	8	75	1.29e-11	62.0
MsaG045302	AT1G28460.1	39.130	69	41	1	2	70	8	75	8.67e-11	59.7

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCATGCATTGTTAGGAAAAT+TGG	0.114215	8:+71092130	MsaT045302.1:intron
TTCTGCTACTATTCATTTAT+AGG	0.193739	8:-71095088	None:intergenic
CGAGCAAGTTGTTATGTTCT+TGG	0.265775	8:-71094137	None:intergenic
TATTTCAGAACTTCAGAAAA+AGG	0.269797	8:+71092505	MsaT045302.1:CDS
AGAAAACATCATTACCTTCT+TGG	0.311252	8:-71094160	None:intergenic
CACTAACCCTGTAGTATTCA+TGG	0.329083	8:-71094361	None:intergenic
TCTCAAAGAGCTTCAAAGTT+TGG	0.334932	8:+71092324	MsaT045302.1:CDS
TTCATTGCAATTCGCATGTT+GGG	0.350353	8:-71095011	None:intergenic
ATACGAGAGATGTTCGTATA+TGG	0.365309	8:+71090718	MsaT045302.1:CDS
CATGCATTGTTAGGAAAATT+GGG	0.366755	8:+71092131	MsaT045302.1:intron
GGAGAAGACTTGGATGGTTT+AGG	0.374421	8:+71092301	MsaT045302.1:CDS
TCCAATGGTTGAGTTTCAAT+TGG	0.387618	8:-71094336	None:intergenic
CTTCATTGCAATTCGCATGT+TGG	0.412994	8:-71095012	None:intergenic
AAATAGATTCATACATAACT+TGG	0.468346	8:-71092487	None:intergenic
GGGGAAGAGTGCAGTTGAAG+AGG	0.468420	8:+71089166	MsaT045302.1:CDS
TTGAATACTCCAGCGATCCT+TGG	0.472174	8:+71089322	MsaT045302.1:CDS
TTGGAATCCATGAATACTAC+AGG	0.477322	8:+71094354	MsaT045302.1:CDS
TCCAATTGAAACTCAACCAT+TGG	0.486216	8:+71094335	MsaT045302.1:CDS
GCAAGTTGTTATGTTCTTGG+AGG	0.493736	8:-71094134	None:intergenic
AGAGAAGGAACTTGCTCAAG+AGG	0.515552	8:+71094287	MsaT045302.1:CDS
CAAGTTGTTATGTTCTTGGA+GGG	0.519113	8:-71094133	None:intergenic
CGCAAAACTCAAGGCTAGGA+TGG	0.531312	8:+71092164	MsaT045302.1:CDS
AATCATCCAAGGTGGAAGAA+TGG	0.535408	8:-71095062	None:intergenic
AAGAACGTACCAAGGATCGC+TGG	0.539592	8:-71089331	None:intergenic
GTAGTATTCATGGATTCCAA+TGG	0.573152	8:-71094351	None:intergenic
GAAGACCTACATTTGGTGAC+TGG	0.579523	8:-71090763	None:intergenic
TAACAACTTGCTCGCCAAGA+AGG	0.586073	8:+71094146	MsaT045302.1:CDS
GTGGTGCCATTCTTCCACCT+TGG	0.595581	8:+71095056	MsaT045302.1:CDS
CTCTCAAACAAATTAGATCA+CGG	0.597625	8:+71092365	MsaT045302.1:CDS
TCTAGAGCACGCAAAACTCA+AGG	0.598390	8:+71092155	MsaT045302.1:CDS
AGAGATGTTCGTATATGGAA+AGG	0.602686	8:+71090723	MsaT045302.1:CDS
AGCACGCAAAACTCAAGGCT+AGG	0.604490	8:+71092160	MsaT045302.1:CDS
TTTATAGGACGAATCATCCA+AGG	0.606737	8:-71095073	None:intergenic
CAAACAAATTAGATCACGGA+AGG	0.617902	8:+71092369	MsaT045302.1:CDS
AGAGGAACTGCAAAATAGTG+TGG	0.635040	8:+71094305	MsaT045302.1:CDS
TTTATGGGAGAAGACTTGGA+TGG	0.637012	8:+71092295	MsaT045302.1:CDS
ACAGCAGCACAAACAAGATG+TGG	0.645176	8:+71095037	MsaT045302.1:CDS
AAGTGCTTCAGAGAAATCAA+AGG	0.661617	8:+71092187	MsaT045302.1:CDS
GGAACTGCAAAATAGTGTGG+AGG	0.690597	8:+71094308	MsaT045302.1:CDS
TGGAATCCATGAATACTACA+GGG	0.694406	8:+71094355	MsaT045302.1:CDS
ATAGGACGAATCATCCAAGG+TGG	0.747780	8:-71095070	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	71089159	71095102	71089159	ID=MsaG045302
Chr8	mRNA	71089159	71095102	71089159	ID=MsaT045302.1;Parent=MsaG045302
Chr8	exon	71089159	71089343	71089159	ID=MsaT045302.1.exon1;Parent=MsaT045302.1
Chr8	CDS	71089159	71089343	71089159	ID=cds.MsaT045302.1;Parent=MsaT045302.1
Chr8	exon	71090697	71090775	71090697	ID=MsaT045302.1.exon2;Parent=MsaT045302.1
Chr8	CDS	71090697	71090775	71090697	ID=cds.MsaT045302.1;Parent=MsaT045302.1
Chr8	exon	71092144	71092208	71092144	ID=MsaT045302.1.exon3;Parent=MsaT045302.1
Chr8	CDS	71092144	71092208	71092144	ID=cds.MsaT045302.1;Parent=MsaT045302.1
Chr8	exon	71092291	71092390	71092291	ID=MsaT045302.1.exon4;Parent=MsaT045302.1
Chr8	CDS	71092291	71092390	71092291	ID=cds.MsaT045302.1;Parent=MsaT045302.1
Chr8	exon	71092485	71092526	71092485	ID=MsaT045302.1.exon5;Parent=MsaT045302.1
Chr8	CDS	71092485	71092526	71092485	ID=cds.MsaT045302.1;Parent=MsaT045302.1
Chr8	exon	71094126	71094167	71094126	ID=MsaT045302.1.exon6;Parent=MsaT045302.1
Chr8	CDS	71094126	71094167	71094126	ID=cds.MsaT045302.1;Parent=MsaT045302.1
Chr8	exon	71094276	71094376	71094276	ID=MsaT045302.1.exon7;Parent=MsaT045302.1
Chr8	CDS	71094276	71094376	71094276	ID=cds.MsaT045302.1;Parent=MsaT045302.1
Chr8	exon	71095003	71095102	71095003	ID=MsaT045302.1.exon8;Parent=MsaT045302.1
Chr8	CDS	71095003	71095102	71095003	ID=cds.MsaT045302.1;Parent=MsaT045302.1

Gene Sequence

>MsaT045302.1

ATGGGGAGGGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATAGACAAGTCACTTTTTCAAAGAGAAGGTCTGGTTTGTTGAAGAAAGCACAAGAGATCTCTGTGCTTTGTGATGCTGATGTTGCTCTCATTATTTTCTCTACTAAAGGAAAGCTTTTTGAATACTCCAGCGATCCTTGTATGGAAAAAATTCTTGAACGATACGAGAGATGTTCGTATATGGAAAGGCAGCTTGTTACAAGTGACCAGTCACCAAATGAAAATTGGGTTCTAGAGCACGCAAAACTCAAGGCTAGGATGGAAGTGCTTCAGAGAAATCAAAGGAATTTTATGGGAGAAGACTTGGATGGTTTAGGTCTCAAAGAGCTTCAAAGTTTGGAGCAACAACTTGATTCAGCTCTCAAACAAATTAGATCACGGAAGAACCAAGTTATGTATGAATCTATTTCAGAACTTCAGAAAAAGGATAAGGCCCTCCAAGAACATAACAACTTGCTCGCCAAGAAGATAAAGGAAAAAGAGAAGGAACTTGCTCAAGAGGAACTGCAAAATAGTGTGGAGGTGACTCCAATTGAAACTCAACCATTGGAATCCATGAATACTACAGGATCTGGGTCCCAACATGCGAATTGCAATGAAGAAACAGCAGCACAAACAAGATGTGGTGCCATTCTTCCACCTTGGATGATTCGTCCTATAAATGAATAG

Protein sequence

>MsaT045302.1

MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAQEISVLCDADVALIIFSTKGKLFEYSSDPCMEKILERYERCSYMERQLVTSDQSPNENWVLEHAKLKARMEVLQRNQRNFMGEDLDGLGLKELQSLEQQLDSALKQIRSRKNQVMYESISELQKKDKALQEHNNLLAKKIKEKEKELAQEELQNSVEVTPIETQPLESMNTTGSGSQHANCNEETAAQTRCGAILPPWMIRPINE*