Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045375 | XP_013458053.1 | 97.436 | 390 | 6 | 4 | 1 | 388 | 1 | 388 | 0.0 | 768 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045375 | sp|Q8LN68|TB1_ORYSJ | 42.038 | 157 | 74 | 2 | 131 | 270 | 115 | 271 | 1.91e-26 | 112 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045375 | tr|A0A072UQH4|A0A072UQH4_MEDTR | 97.436 | 390 | 6 | 4 | 1 | 388 | 1 | 388 | 0.0 | 768 |
Gene ID | Type | Classification |
---|---|---|
MsaG045375 | TF | TCP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000107 | MsaG045375 | 0.802586 | 8.787429e-49 | 1.259925e-46 |
MsaG000190 | MsaG045375 | 0.831103 | 3.637987e-55 | 1.086650e-52 |
MsaG000228 | MsaG045375 | 0.820929 | 9.285279e-53 | 2.093033e-50 |
MsaG000419 | MsaG045375 | 0.806252 | 1.525546e-49 | 2.381690e-47 |
MsaG001238 | MsaG045375 | 0.807020 | 1.051801e-49 | 1.672070e-47 |
MsaG001269 | MsaG045375 | 0.833532 | 9.164679e-56 | 2.938750e-53 |
MsaG001276 | MsaG045375 | 0.806946 | 1.090265e-49 | 1.730172e-47 |
MsaG004146 | MsaG045375 | 0.807298 | 9.191384e-50 | 1.470820e-47 |
MsaG004249 | MsaG045375 | 0.803339 | 6.150105e-49 | 8.971873e-47 |
MsaG004321 | MsaG045375 | 0.804314 | 3.867717e-49 | 5.771164e-47 |
MsaG004986 | MsaG045375 | 0.831672 | 2.638328e-55 | 8.013175e-53 |
MsaG005189 | MsaG045375 | 0.803926 | 4.653179e-49 | 6.881021e-47 |
MsaG005274 | MsaG045375 | 0.844400 | 1.448414e-58 | 6.507050e-56 |
MsaG006177 | MsaG045375 | 0.840224 | 1.828669e-57 | 7.188917e-55 |
MsaG006684 | MsaG045375 | 0.800336 | 2.527082e-48 | 3.442787e-46 |
MsaG006837 | MsaG045375 | 0.836307 | 1.847129e-56 | 6.434922e-54 |
MsaG006886 | MsaG045375 | 0.851022 | 2.220368e-60 | 1.246508e-57 |
MsaG007215 | MsaG045375 | 0.821743 | 6.036707e-53 | 1.390401e-50 |
MsaG007354 | MsaG045375 | 0.825318 | 8.885615e-54 | 2.254803e-51 |
MsaG007501 | MsaG045375 | 0.814795 | 2.220221e-51 | 4.269799e-49 |
MsaG007502 | MsaG045375 | 0.816846 | 7.783514e-52 | 1.576992e-49 |
MsaG007950 | MsaG045375 | 0.810789 | 1.657342e-50 | 2.885278e-48 |
MsaG008289 | MsaG045375 | 0.822973 | 3.137680e-53 | 7.469914e-51 |
MsaG008356 | MsaG045375 | 0.802514 | 9.090541e-49 | 1.301227e-46 |
MsaG008479 | MsaG045375 | 0.825386 | 8.563722e-54 | 2.177122e-51 |
MsaG008634 | MsaG045375 | 0.803392 | 5.997660e-49 | 8.760312e-47 |
MsaG009061 | MsaG045375 | 0.880363 | 1.233632e-69 | 2.264719e-66 |
MsaG009477 | MsaG045375 | 0.803789 | 4.967309e-49 | 7.322096e-47 |
MsaG010060 | MsaG045375 | 0.834671 | 4.766016e-56 | 1.580899e-53 |
MsaG010768 | MsaG045375 | 0.839565 | 2.710424e-57 | 1.043712e-54 |
MsaG011109 | MsaG045375 | 0.840115 | 1.951218e-57 | 7.644660e-55 |
MsaG011225 | MsaG045375 | 0.817969 | 4.361155e-52 | 9.095518e-50 |
MsaG011314 | MsaG045375 | 0.806042 | 1.688518e-49 | 2.622906e-47 |
MsaG011437 | MsaG045375 | 0.815567 | 1.498978e-51 | 2.939520e-49 |
MsaG011596 | MsaG045375 | 0.801041 | 1.817498e-48 | 2.515789e-46 |
MsaG011952 | MsaG045375 | 0.823441 | 2.442783e-53 | 5.889476e-51 |
MsaG012279 | MsaG045375 | 0.819580 | 1.886261e-52 | 4.102453e-50 |
MsaG012467 | MsaG045375 | 0.800078 | 2.850493e-48 | 3.860867e-46 |
MsaG012553 | MsaG045375 | 0.806398 | 1.421436e-49 | 2.226832e-47 |
MsaG043000 | MsaG045375 | 0.841421 | 8.906103e-58 | 3.636009e-55 |
MsaG043506 | MsaG045375 | 0.825987 | 6.175776e-54 | 1.596595e-51 |
MsaG044895 | MsaG045375 | 0.801489 | 1.473665e-48 | 2.060609e-46 |
MsaG045363 | MsaG045375 | 0.802050 | 1.131718e-48 | 1.602786e-46 |
MsaG045371 | MsaG045375 | 0.808259 | 5.755429e-50 | 9.424914e-48 |
MsaG045372 | MsaG045375 | 0.847739 | 1.805711e-59 | 9.064995e-57 |
MsaG045373 | MsaG045375 | 0.819005 | 2.545581e-52 | 5.453907e-50 |
MsaG045374 | MsaG045375 | 0.866887 | 4.127123e-65 | 4.207968e-62 |
MsaG045375 | MsaG045395 | 0.840807 | 1.288966e-57 | 5.160840e-55 |
MsaG045375 | MsaG045576 | 0.803990 | 4.512488e-49 | 6.682904e-47 |
MsaG045375 | MsaG045669 | 0.820835 | 9.757692e-53 | 2.193892e-50 |
MsaG045375 | MsaG045973 | 0.811604 | 1.105611e-50 | 1.963548e-48 |
MsaG045375 | MsaG046027 | 0.860336 | 4.360326e-63 | 3.434726e-60 |
MsaG045375 | MsaG046226 | 0.804492 | 3.552842e-49 | 5.323131e-47 |
MsaG045375 | MsaG046473 | 0.838899 | 4.026858e-57 | 1.518788e-54 |
MsaG045375 | MsaG046802 | 0.809208 | 3.617304e-50 | 6.060045e-48 |
MsaG045375 | MsaG002433 | 0.820290 | 1.299735e-52 | 2.880760e-50 |
MsaG045375 | MsaG008854 | 0.813279 | 4.777699e-51 | 8.844893e-49 |
MsaG045375 | MsaG008313 | 0.804270 | 3.949294e-49 | 5.887030e-47 |
MsaG045375 | MsaG013007 | 0.817101 | 6.827320e-52 | 1.392436e-49 |
MsaG045375 | MsaG020277 | 0.821219 | 7.969472e-53 | 1.810235e-50 |
MsaG045375 | MsaG019828 | 0.816203 | 1.083109e-51 | 2.158592e-49 |
MsaG045375 | MsaG028121 | 0.819814 | 1.668206e-52 | 3.650837e-50 |
MsaG045375 | MsaG034613 | 0.823541 | 2.315746e-53 | 5.598412e-51 |
MsaG045375 | MsaG033153 | 0.807061 | 1.031561e-49 | 1.641427e-47 |
MsaG045375 | MsaG032261 | 0.801369 | 1.558733e-48 | 2.173677e-46 |
MsaG045375 | MsaG030837 | 0.808116 | 6.173935e-50 | 1.007524e-47 |
MsaG045375 | MsaG030190 | 0.817037 | 7.055471e-52 | 1.436605e-49 |
MsaG045375 | MsaG037513 | 0.814959 | 2.042821e-51 | 3.944928e-49 |
MsaG045375 | MsaG035795 | 0.815898 | 1.265459e-51 | 2.502554e-49 |
MsaG014153 | MsaG045375 | 0.800353 | 2.507722e-48 | 3.417744e-46 |
MsaG015259 | MsaG045375 | 0.852519 | 8.393925e-61 | 4.965014e-58 |
MsaG015807 | MsaG045375 | 0.827203 | 3.177542e-54 | 8.497142e-52 |
MsaG016006 | MsaG045375 | 0.801866 | 1.234281e-48 | 1.740780e-46 |
MsaG016821 | MsaG045375 | 0.801104 | 1.765035e-48 | 2.446613e-46 |
MsaG017618 | MsaG045375 | 0.824477 | 1.400112e-53 | 3.472002e-51 |
MsaG017778 | MsaG045375 | 0.834421 | 5.505234e-56 | 1.812478e-53 |
MsaG018175 | MsaG045375 | 0.800098 | 2.824697e-48 | 3.827570e-46 |
MsaG018560 | MsaG045375 | 0.816935 | 7.437757e-52 | 1.510433e-49 |
MsaG018786 | MsaG045375 | 0.862163 | 1.217824e-63 | 1.028574e-60 |
MsaG019138 | MsaG045375 | 0.809665 | 2.888010e-50 | 4.892203e-48 |
MsaG019564 | MsaG045375 | 0.826888 | 3.777093e-54 | 1.001200e-51 |
MsaG019935 | MsaG045375 | 0.815484 | 1.563838e-51 | 3.060177e-49 |
MsaG019978 | MsaG045375 | 0.822478 | 4.086437e-53 | 9.599097e-51 |
MsaG020467 | MsaG045375 | 0.844269 | 1.569998e-58 | 7.023315e-56 |
MsaG020652 | MsaG045375 | 0.861625 | 1.776869e-63 | 1.469659e-60 |
MsaG020761 | MsaG045375 | 0.833004 | 1.238950e-55 | 3.911395e-53 |
MsaG021206 | MsaG045375 | 0.820123 | 1.418949e-52 | 3.131076e-50 |
MsaG021404 | MsaG045375 | 0.836316 | 1.837545e-56 | 6.403131e-54 |
MsaG021553 | MsaG045375 | 0.821700 | 6.175836e-53 | 1.420868e-50 |
MsaG021775 | MsaG045375 | 0.836009 | 2.197686e-56 | 7.587272e-54 |
MsaG022345 | MsaG045375 | 0.813784 | 3.704335e-51 | 6.945548e-49 |
MsaG022387 | MsaG045375 | 0.819119 | 2.399644e-52 | 5.156678e-50 |
MsaG022537 | MsaG045375 | 0.811873 | 9.666427e-51 | 1.728150e-48 |
MsaG023885 | MsaG045375 | 0.821792 | 5.882023e-53 | 1.356485e-50 |
MsaG023890 | MsaG045375 | 0.810421 | 1.988613e-50 | 3.431158e-48 |
MsaG025492 | MsaG045375 | 0.802715 | 8.266333e-49 | 1.188668e-46 |
MsaG026192 | MsaG045375 | 0.835603 | 2.781396e-56 | 9.486383e-54 |
MsaG026849 | MsaG045375 | 0.822436 | 4.178652e-53 | 9.804543e-51 |
MsaG026830 | MsaG045375 | 0.821074 | 8.603979e-53 | 1.946882e-50 |
MsaG026831 | MsaG045375 | 0.841937 | 6.520801e-58 | 2.706300e-55 |
MsaG027026 | MsaG045375 | 0.821251 | 7.834924e-53 | 1.781207e-50 |
MsaG028109 | MsaG045375 | 0.824364 | 1.487887e-53 | 3.678465e-51 |
MsaG028937 | MsaG045375 | 0.817410 | 5.820435e-52 | 1.196567e-49 |
MsaG029070 | MsaG045375 | 0.802470 | 9.281199e-49 | 1.327171e-46 |
MsaG029232 | MsaG045375 | 0.816612 | 8.778318e-52 | 1.767864e-49 |
MsaG029335 | MsaG045375 | 0.829697 | 7.996483e-55 | 2.294219e-52 |
MsaG029413 | MsaG045375 | 0.815006 | 1.994627e-51 | 3.856435e-49 |
MsaG029424 | MsaG045375 | 0.838254 | 5.895125e-57 | 2.179093e-54 |
MsaG029461 | MsaG045375 | 0.820157 | 1.394055e-52 | 3.078895e-50 |
MsaG029569 | MsaG045375 | 0.816217 | 1.075032e-51 | 2.143296e-49 |
MsaG031153 | MsaG045375 | 0.801567 | 1.420400e-48 | 1.989657e-46 |
MsaG031652 | MsaG045375 | 0.821882 | 5.609131e-53 | 1.296713e-50 |
MsaG032064 | MsaG045375 | 0.826638 | 4.329289e-54 | 1.139607e-51 |
MsaG032221 | MsaG045375 | 0.826570 | 4.494532e-54 | 1.180866e-51 |
MsaG033593 | MsaG045375 | 0.815384 | 1.645212e-51 | 3.211452e-49 |
MsaG034034 | MsaG045375 | 0.824010 | 1.800297e-53 | 4.408109e-51 |
MsaG034285 | MsaG045375 | 0.801737 | 1.311171e-48 | 1.843799e-46 |
MsaG034444 | MsaG045375 | 0.818915 | 2.668109e-52 | 5.702825e-50 |
MsaG034463 | MsaG045375 | 0.800949 | 1.897723e-48 | 2.621392e-46 |
MsaG034946 | MsaG045375 | 0.807237 | 9.468499e-50 | 1.512922e-47 |
MsaG034996 | MsaG045375 | 0.800692 | 2.140456e-48 | 2.939707e-46 |
MsaG035198 | MsaG045375 | 0.812996 | 5.508460e-51 | 1.012617e-48 |
MsaG035529 | MsaG045375 | 0.806560 | 1.314477e-49 | 2.067161e-47 |
MsaG037948 | MsaG045375 | 0.810099 | 2.332241e-50 | 3.992414e-48 |
MsaG039855 | MsaG045375 | 0.812112 | 8.581571e-51 | 1.543148e-48 |
MsaG040649 | MsaG045375 | 0.808641 | 4.775222e-50 | 7.891854e-48 |
MsaG040669 | MsaG045375 | 0.814208 | 2.990572e-51 | 5.666988e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045375 | MtrunA17_Chr4g0062691 | 97.436 | 390 | 6 | 4 | 1 | 388 | 1 | 388 | 0.0 | 768 |
MsaG045375 | MtrunA17_Chr6g0456881 | 41.176 | 170 | 85 | 3 | 110 | 266 | 105 | 272 | 1.39e-28 | 115 |
MsaG045375 | MtrunA17_Chr7g0220931 | 66.129 | 62 | 21 | 0 | 133 | 194 | 122 | 183 | 3.29e-21 | 94.0 |
MsaG045375 | MtrunA17_Chr1g0205131 | 55.696 | 79 | 33 | 1 | 119 | 195 | 95 | 173 | 1.27e-19 | 89.7 |
MsaG045375 | MtrunA17_Chr8g0376571 | 35.329 | 167 | 83 | 6 | 127 | 268 | 57 | 223 | 3.07e-17 | 83.2 |
MsaG045375 | MtrunA17_Chr8g0360441 | 45.918 | 98 | 51 | 2 | 109 | 205 | 31 | 127 | 4.82e-17 | 82.4 |
MsaG045375 | MtrunA17_Chr7g0219461 | 32.035 | 231 | 129 | 9 | 132 | 358 | 58 | 264 | 1.08e-16 | 80.5 |
MsaG045375 | MtrunA17_Chr2g0316391 | 48.718 | 78 | 39 | 1 | 113 | 190 | 3 | 79 | 3.16e-15 | 75.5 |
MsaG045375 | MtrunA17_Chr6g0454781 | 58.621 | 58 | 24 | 0 | 132 | 189 | 50 | 107 | 4.81e-15 | 75.5 |
MsaG045375 | MtrunA17_Chr4g0040921 | 50.000 | 64 | 32 | 0 | 127 | 190 | 18 | 81 | 7.16e-15 | 75.1 |
MsaG045375 | MtrunA17_Chr3g0086961 | 33.099 | 142 | 87 | 2 | 132 | 268 | 58 | 196 | 1.61e-14 | 74.3 |
MsaG045375 | MtrunA17_Chr2g0325171 | 49.206 | 63 | 32 | 0 | 127 | 189 | 20 | 82 | 1.95e-14 | 73.6 |
MsaG045375 | MtrunA17_Chr4g0061561 | 48.276 | 58 | 30 | 0 | 132 | 189 | 58 | 115 | 4.30e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045375 | AT3G18550.1 | 31.579 | 304 | 160 | 9 | 1 | 263 | 5 | 301 | 3.25e-25 | 106 |
MsaG045375 | AT3G18550.4 | 31.579 | 304 | 160 | 9 | 1 | 263 | 5 | 301 | 3.25e-25 | 106 |
MsaG045375 | AT3G18550.3 | 32.131 | 305 | 157 | 11 | 1 | 263 | 5 | 301 | 4.26e-25 | 106 |
MsaG045375 | AT3G18550.2 | 36.538 | 208 | 109 | 5 | 1 | 190 | 5 | 207 | 7.85e-25 | 105 |
MsaG045375 | AT1G67260.2 | 51.546 | 97 | 39 | 1 | 108 | 196 | 56 | 152 | 1.19e-23 | 101 |
MsaG045375 | AT1G67260.3 | 51.546 | 97 | 39 | 1 | 108 | 196 | 56 | 152 | 1.19e-23 | 101 |
MsaG045375 | AT1G67260.1 | 51.546 | 97 | 39 | 1 | 108 | 196 | 56 | 152 | 1.44e-23 | 100 |
MsaG045375 | AT1G68800.2 | 65.217 | 69 | 23 | 1 | 122 | 189 | 102 | 170 | 2.05e-22 | 97.8 |
MsaG045375 | AT1G68800.1 | 65.217 | 69 | 23 | 1 | 122 | 189 | 102 | 170 | 2.29e-22 | 97.4 |
MsaG045375 | AT4G18390.1 | 35.519 | 183 | 78 | 6 | 127 | 293 | 38 | 196 | 1.05e-19 | 90.1 |
MsaG045375 | AT4G18390.2 | 35.519 | 183 | 78 | 6 | 127 | 293 | 38 | 196 | 1.05e-19 | 90.1 |
MsaG045375 | AT3G15030.2 | 44.898 | 98 | 53 | 1 | 94 | 190 | 7 | 104 | 3.83e-17 | 83.2 |
MsaG045375 | AT3G15030.4 | 44.898 | 98 | 53 | 1 | 94 | 190 | 7 | 104 | 3.83e-17 | 83.2 |
MsaG045375 | AT3G15030.3 | 44.898 | 98 | 53 | 1 | 94 | 190 | 7 | 104 | 3.83e-17 | 83.2 |
MsaG045375 | AT3G15030.1 | 44.898 | 98 | 53 | 1 | 94 | 190 | 7 | 104 | 3.83e-17 | 83.2 |
MsaG045375 | AT1G53230.1 | 49.383 | 81 | 40 | 1 | 112 | 191 | 29 | 109 | 5.95e-16 | 79.3 |
MsaG045375 | AT1G53230.2 | 49.383 | 81 | 40 | 1 | 112 | 191 | 29 | 109 | 5.95e-16 | 79.3 |
MsaG045375 | AT1G30210.2 | 36.879 | 141 | 65 | 3 | 127 | 267 | 46 | 162 | 8.12e-15 | 75.1 |
MsaG045375 | AT1G30210.1 | 36.879 | 141 | 65 | 3 | 127 | 267 | 46 | 162 | 8.12e-15 | 75.1 |
MsaG045375 | AT2G31070.1 | 45.000 | 80 | 43 | 1 | 111 | 189 | 8 | 87 | 5.28e-14 | 73.2 |
MsaG045375 | AT3G02150.1 | 53.448 | 58 | 27 | 0 | 132 | 189 | 75 | 132 | 2.19e-13 | 70.5 |
MsaG045375 | AT3G02150.2 | 53.448 | 58 | 27 | 0 | 132 | 189 | 75 | 132 | 4.09e-13 | 70.5 |
MsaG045375 | AT5G60970.1 | 50.000 | 58 | 29 | 0 | 132 | 189 | 64 | 121 | 9.95e-13 | 69.3 |
MsaG045375 | AT5G08070.2 | 48.276 | 58 | 30 | 0 | 132 | 189 | 34 | 91 | 1.72e-11 | 64.3 |
MsaG045375 | AT5G08070.1 | 48.276 | 58 | 30 | 0 | 132 | 189 | 34 | 91 | 1.72e-11 | 64.3 |
Find 64 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATATCATCAGGATAATT+AGG | 0.171473 | 8:+71940843 | None:intergenic |
GAGAAGAAATAGTACTAATA+AGG | 0.277919 | 8:-71940298 | MsaT045375.1:CDS |
GAGAAAGGAGGAAGAGGAAA+GGG | 0.310050 | 8:+71940879 | None:intergenic |
TTGCTTTCAAAGGAACAAAA+AGG | 0.336731 | 8:+71940939 | None:intergenic |
CATGTTGTTGGAGGAAGATT+TGG | 0.344830 | 8:+71940802 | None:intergenic |
TTTGGTCTTCAAGATATGTT+AGG | 0.353164 | 8:-71940519 | MsaT045375.1:CDS |
AGAAAGGAGGAAGAGGAAAG+GGG | 0.382698 | 8:+71940880 | None:intergenic |
AAGGTGTTTGATCTCAAGTT+TGG | 0.394081 | 8:+71940452 | None:intergenic |
TGCTAGGTTATTTCCATTGA+GGG | 0.401156 | 8:+71940977 | None:intergenic |
CAATATCATCAGGATAATTA+GGG | 0.427407 | 8:+71940844 | None:intergenic |
AGAGAAAGGAGGAAGAGGAA+AGG | 0.429249 | 8:+71940878 | None:intergenic |
AATTTGAACTTACTTGTTGA+AGG | 0.433582 | 8:+71939905 | None:intergenic |
GCTTTGATTGTTGAGTTTGA+AGG | 0.434606 | 8:+71940708 | None:intergenic |
CTTCCTGCAGCTGCTGGTAA+AGG | 0.436015 | 8:-71940672 | MsaT045375.1:CDS |
TCAAGCTTGGATAATGAAGT+TGG | 0.437838 | 8:-71940360 | MsaT045375.1:CDS |
TTGTTATTCATCATCACAAC+AGG | 0.440557 | 8:+71940753 | None:intergenic |
TCAAAACTGCGAAAGGACTA+AGG | 0.450167 | 8:-71940584 | MsaT045375.1:CDS |
CTTTGTTCATTATGAGCAAA+TGG | 0.450640 | 8:-71939960 | MsaT045375.1:CDS |
TTGAGAGAATTGAACATCAT+AGG | 0.458304 | 8:+71939931 | None:intergenic |
GGAAATCAACATCATGTTGT+TGG | 0.463207 | 8:+71940790 | None:intergenic |
CAAGAGAAAGGGCAAGAGAA+AGG | 0.468363 | 8:-71940233 | MsaT045375.1:CDS |
AGATTCTTCCACACTTTCAA+AGG | 0.468610 | 8:+71940113 | None:intergenic |
TTTCAAAGGGGTTCCAAATG+AGG | 0.468951 | 8:+71940127 | None:intergenic |
GATTTGGTGGCTGTCTTGAA+AGG | 0.472274 | 8:+71940818 | None:intergenic |
GAAAGGAGGAAGAGGAAAGG+GGG | 0.475237 | 8:+71940881 | None:intergenic |
GGGAATTGAAAGAAAGAGAA+AGG | 0.476940 | 8:+71940864 | None:intergenic |
AAGAGTGCATTCAATTCTAT+AGG | 0.477613 | 8:-71940267 | MsaT045375.1:CDS |
AATCTTCTTCCTGCAGCTGC+TGG | 0.488028 | 8:-71940678 | MsaT045375.1:CDS |
GATTCTTCCACACTTTCAAA+GGG | 0.488241 | 8:+71940114 | None:intergenic |
TCAACAAACAGTTCCCTCAA+TGG | 0.498770 | 8:-71940990 | MsaT045375.1:CDS |
AAGAAAGAGAAAGGAGGAAG+AGG | 0.499947 | 8:+71940873 | None:intergenic |
CAACAGGTGGATGATGAAGT+TGG | 0.500835 | 8:+71940769 | None:intergenic |
GTTTGATCTCAAGTTTGGAT+TGG | 0.508056 | 8:+71940457 | None:intergenic |
TGAAAGGGATCAATATCATC+AGG | 0.511469 | 8:+71940834 | None:intergenic |
GTTGTTGGAGGAAGATTTGG+TGG | 0.511656 | 8:+71940805 | None:intergenic |
TGAACAATTTCACCAATCCA+TGG | 0.514462 | 8:-71939793 | MsaT045375.1:CDS |
TCAAAGCAATACAATGAAGA+AGG | 0.515193 | 8:-71940162 | MsaT045375.1:CDS |
ATGCTAGGTTATTTCCATTG+AGG | 0.517513 | 8:+71940976 | None:intergenic |
TACTGAAGGAGTTTCAAGCT+TGG | 0.530351 | 8:-71940373 | MsaT045375.1:CDS |
TGAAGTTGAGTTGCTTTCAA+AGG | 0.532484 | 8:+71940929 | None:intergenic |
TTGCCTTTACCAGCAGCTGC+AGG | 0.547785 | 8:+71940669 | None:intergenic |
GAAAGTGTGGAAGAATCTGC+AGG | 0.550929 | 8:-71940108 | MsaT045375.1:CDS |
TTGGAACCCCTTTGAAAGTG+TGG | 0.551418 | 8:-71940121 | MsaT045375.1:CDS |
ATTTGGTGGCTGTCTTGAAA+GGG | 0.555885 | 8:+71940819 | None:intergenic |
GTGATTTAGAGGAAAATGCT+AGG | 0.566051 | 8:+71940961 | None:intergenic |
CAAAACTGCGAAAGGACTAA+GGG | 0.567037 | 8:-71940583 | MsaT045375.1:CDS |
AATCAACATCATGTTGTTGG+AGG | 0.575800 | 8:+71940793 | None:intergenic |
TCAACTTCTGAATGTACTGA+AGG | 0.578330 | 8:-71940387 | MsaT045375.1:CDS |
CTGCGAAAGGACTAAGGGAT+CGG | 0.582838 | 8:-71940578 | MsaT045375.1:CDS |
AATCAGCTTCACATGATCAA+AGG | 0.583940 | 8:+71940050 | None:intergenic |
AGCAAGATCAAAACTGCGAA+AGG | 0.587894 | 8:-71940591 | MsaT045375.1:CDS |
AAGCAAGCAAAACAGTGGAC+TGG | 0.594986 | 8:-71940488 | MsaT045375.1:CDS |
GGTACACATCAGAGTACTCA+AGG | 0.596783 | 8:-71940087 | MsaT045375.1:CDS |
TTATTCATCATCACAACAGG+TGG | 0.603901 | 8:+71940756 | None:intergenic |
TGTCACTTGAAGTTGCAAAG+AGG | 0.614161 | 8:-71940545 | MsaT045375.1:CDS |
AAGGGCAAGAGAAAGGACAA+AGG | 0.615637 | 8:-71940226 | MsaT045375.1:CDS |
AATTGAAAGAAAGAGAAAGG+AGG | 0.616668 | 8:+71940867 | None:intergenic |
AGCTTCACATGATCAAAGGA+AGG | 0.617475 | 8:+71940054 | None:intergenic |
TGGTAAAGGCAAAACTGTAG+TGG | 0.630471 | 8:-71940658 | MsaT045375.1:CDS |
GGTAGCATGTTAATTAGATG+CGG | 0.636554 | 8:+71939745 | None:intergenic |
AGAGAATTGAACATCATAGG+TGG | 0.646080 | 8:+71939934 | None:intergenic |
ATTCTTCCACACTTTCAAAG+GGG | 0.682878 | 8:+71940115 | None:intergenic |
TCATGTGAAGCTGATTGATG+AGG | 0.717288 | 8:-71940043 | MsaT045375.1:CDS |
ACAGTACTGATCATCATCAG+CGG | 0.729484 | 8:-71940731 | MsaT045375.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 71939758 | 71941018 | 71939758 | ID=MsaG045375 |
Chr8 | mRNA | 71939758 | 71941018 | 71939758 | ID=MsaT045375.1;Parent=MsaG045375 |
Chr8 | exon | 71939758 | 71939823 | 71939758 | ID=MsaT045375.1.exon2;Parent=MsaT045375.1 |
Chr8 | CDS | 71939758 | 71939823 | 71939758 | ID=cds.MsaT045375.1;Parent=MsaT045375.1 |
Chr8 | exon | 71939918 | 71941018 | 71939918 | ID=MsaT045375.1.exon1;Parent=MsaT045375.1 |
Chr8 | CDS | 71939918 | 71941018 | 71939918 | ID=cds.MsaT045375.1;Parent=MsaT045375.1 |
Gene Sequence |
Protein sequence |