Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045408 | XP_003609208.1 | 98.015 | 403 | 8 | 0 | 1 | 403 | 1 | 403 | 0.0 | 825 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045408 | sp|Q9ZQ85|EFM_ARATH | 54.948 | 384 | 120 | 16 | 1 | 358 | 1 | 357 | 2.16e-115 | 346 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045408 | tr|G7JU63|G7JU63_MEDTR | 98.015 | 403 | 8 | 0 | 1 | 403 | 1 | 403 | 0.0 | 825 |
Gene ID | Type | Classification |
---|---|---|
MsaG045408 | TF | GARP-G2-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045408 | MtrunA17_Chr4g0062921 | 98.015 | 403 | 8 | 0 | 1 | 403 | 1 | 403 | 0.0 | 825 |
MsaG045408 | MtrunA17_Chr4g0045361 | 38.649 | 370 | 171 | 12 | 4 | 328 | 6 | 364 | 1.24e-61 | 204 |
MsaG045408 | MtrunA17_Chr5g0422621 | 39.589 | 341 | 143 | 14 | 30 | 350 | 12 | 309 | 4.87e-52 | 177 |
MsaG045408 | MtrunA17_Chr1g0198601 | 35.714 | 336 | 151 | 8 | 29 | 328 | 2 | 308 | 7.25e-51 | 175 |
MsaG045408 | MtrunA17_Chr5g0402631 | 34.539 | 304 | 146 | 8 | 6 | 305 | 31 | 285 | 1.05e-37 | 139 |
MsaG045408 | MtrunA17_Chr1g0175081 | 43.023 | 86 | 45 | 1 | 219 | 300 | 2 | 87 | 2.26e-15 | 71.6 |
MsaG045408 | MtrunA17_Chr1g0190301 | 48.235 | 85 | 42 | 1 | 226 | 310 | 166 | 248 | 2.41e-15 | 77.0 |
MsaG045408 | MtrunA17_Chr7g0261911 | 47.727 | 88 | 44 | 1 | 226 | 313 | 253 | 338 | 4.91e-15 | 76.6 |
MsaG045408 | MtrunA17_Chr2g0304841 | 37.383 | 107 | 59 | 3 | 232 | 331 | 210 | 315 | 6.19e-15 | 76.6 |
MsaG045408 | MtrunA17_Chr4g0074411 | 49.296 | 71 | 35 | 1 | 232 | 302 | 198 | 267 | 3.15e-14 | 74.3 |
MsaG045408 | MtrunA17_Chr1g0175091 | 43.478 | 92 | 47 | 1 | 211 | 297 | 229 | 320 | 1.25e-13 | 72.0 |
MsaG045408 | MtrunA17_Chr7g0255711 | 52.381 | 63 | 29 | 1 | 231 | 293 | 87 | 148 | 1.36e-13 | 70.9 |
MsaG045408 | MtrunA17_Chr1g0149841 | 54.839 | 62 | 27 | 1 | 234 | 295 | 190 | 250 | 6.04e-13 | 70.1 |
MsaG045408 | MtrunA17_Chr7g0274471 | 56.667 | 60 | 26 | 0 | 235 | 294 | 218 | 277 | 7.05e-13 | 69.7 |
MsaG045408 | MtrunA17_Chr5g0400241 | 52.308 | 65 | 29 | 2 | 230 | 293 | 305 | 368 | 1.07e-12 | 69.7 |
MsaG045408 | MtrunA17_Chr4g0067981 | 52.941 | 68 | 31 | 1 | 232 | 299 | 212 | 278 | 1.12e-12 | 69.7 |
MsaG045408 | MtrunA17_Chr4g0031961 | 40.404 | 99 | 52 | 3 | 218 | 316 | 119 | 210 | 1.30e-12 | 68.2 |
MsaG045408 | MtrunA17_Chr5g0417521 | 53.448 | 58 | 27 | 0 | 232 | 289 | 12 | 69 | 1.43e-12 | 68.6 |
MsaG045408 | MtrunA17_Chr2g0294911 | 43.333 | 90 | 44 | 2 | 232 | 315 | 208 | 296 | 2.14e-12 | 68.9 |
MsaG045408 | MtrunA17_Chr2g0321461 | 55.172 | 58 | 26 | 0 | 232 | 289 | 42 | 99 | 2.34e-12 | 68.2 |
MsaG045408 | MtrunA17_Chr4g0074401 | 46.479 | 71 | 37 | 1 | 232 | 302 | 200 | 269 | 3.27e-12 | 68.2 |
MsaG045408 | MtrunA17_Chr6g0461641 | 44.444 | 81 | 40 | 2 | 232 | 308 | 39 | 118 | 4.62e-12 | 67.0 |
MsaG045408 | MtrunA17_Chr7g0254981 | 55.000 | 60 | 27 | 0 | 235 | 294 | 50 | 109 | 4.92e-12 | 66.2 |
MsaG045408 | MtrunA17_Chr1g0162931 | 61.224 | 49 | 19 | 0 | 240 | 288 | 23 | 71 | 6.39e-12 | 65.9 |
MsaG045408 | MtrunA17_Chr1g0149831 | 51.613 | 62 | 26 | 1 | 234 | 295 | 127 | 184 | 6.43e-12 | 65.1 |
MsaG045408 | MtrunA17_Chr2g0291021 | 50.746 | 67 | 33 | 0 | 235 | 301 | 49 | 115 | 7.13e-12 | 66.2 |
MsaG045408 | MtrunA17_Chr1g0161431 | 46.753 | 77 | 38 | 2 | 227 | 301 | 192 | 267 | 7.98e-12 | 67.0 |
MsaG045408 | MtrunA17_Chr2g0324891 | 43.056 | 72 | 40 | 1 | 221 | 292 | 147 | 217 | 8.82e-12 | 66.2 |
MsaG045408 | MtrunA17_Chr3g0109981 | 46.479 | 71 | 38 | 0 | 231 | 301 | 270 | 340 | 1.07e-11 | 66.2 |
MsaG045408 | MtrunA17_Chr4g0054981 | 44.776 | 67 | 36 | 1 | 234 | 300 | 309 | 374 | 1.09e-11 | 66.6 |
MsaG045408 | MtrunA17_Chr1g0210911 | 59.184 | 49 | 20 | 0 | 240 | 288 | 27 | 75 | 1.20e-11 | 65.5 |
MsaG045408 | MtrunA17_Chr8g0366281 | 46.575 | 73 | 39 | 0 | 229 | 301 | 167 | 239 | 1.32e-11 | 65.5 |
MsaG045408 | MtrunA17_Chr4g0040481 | 48.387 | 62 | 31 | 1 | 231 | 292 | 154 | 214 | 1.33e-11 | 65.9 |
MsaG045408 | MtrunA17_Chr5g0409731 | 54.098 | 61 | 26 | 1 | 235 | 293 | 25 | 85 | 1.67e-11 | 64.7 |
MsaG045408 | MtrunA17_Chr7g0243081 | 55.769 | 52 | 23 | 0 | 237 | 288 | 73 | 124 | 1.94e-11 | 65.1 |
MsaG045408 | MtrunA17_Chr1g0197171 | 58.182 | 55 | 23 | 0 | 235 | 289 | 44 | 98 | 1.97e-11 | 64.3 |
MsaG045408 | MtrunA17_Chr6g0479431 | 49.254 | 67 | 32 | 1 | 234 | 298 | 201 | 267 | 1.97e-11 | 65.1 |
MsaG045408 | MtrunA17_Chr3g0137101 | 47.692 | 65 | 33 | 1 | 234 | 298 | 197 | 260 | 2.48e-11 | 65.5 |
MsaG045408 | MtrunA17_Chr2g0290991 | 58.182 | 55 | 23 | 0 | 235 | 289 | 39 | 93 | 2.87e-11 | 64.3 |
MsaG045408 | MtrunA17_Chr8g0376881 | 53.333 | 60 | 27 | 1 | 234 | 293 | 208 | 266 | 3.12e-11 | 65.1 |
MsaG045408 | MtrunA17_Chr4g0009901 | 45.588 | 68 | 36 | 1 | 234 | 301 | 167 | 233 | 3.44e-11 | 63.5 |
MsaG045408 | MtrunA17_Chr1g0154261 | 38.095 | 105 | 60 | 1 | 227 | 331 | 118 | 217 | 3.82e-11 | 63.5 |
MsaG045408 | MtrunA17_Chr2g0288601 | 63.043 | 46 | 17 | 0 | 240 | 285 | 76 | 121 | 5.86e-11 | 59.7 |
MsaG045408 | MtrunA17_Chr7g0258551 | 50.847 | 59 | 29 | 0 | 230 | 288 | 207 | 265 | 6.44e-11 | 63.5 |
MsaG045408 | MtrunA17_Chr5g0410741 | 51.724 | 58 | 28 | 0 | 231 | 288 | 215 | 272 | 8.87e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG045408 | AT2G03500.1 | 54.948 | 384 | 120 | 16 | 1 | 358 | 1 | 357 | 2.20e-116 | 346 |
MsaG045408 | AT1G68670.1 | 37.535 | 357 | 157 | 12 | 32 | 351 | 13 | 340 | 2.31e-61 | 202 |
MsaG045408 | AT1G25550.1 | 39.394 | 330 | 132 | 13 | 18 | 316 | 2 | 294 | 2.45e-55 | 186 |
MsaG045408 | AT1G25550.2 | 37.966 | 295 | 119 | 11 | 18 | 285 | 2 | 259 | 5.32e-43 | 152 |
MsaG045408 | AT4G37180.1 | 35.473 | 296 | 139 | 8 | 7 | 293 | 16 | 268 | 1.49e-39 | 145 |
MsaG045408 | AT4G37180.2 | 34.797 | 296 | 148 | 8 | 7 | 293 | 16 | 275 | 2.88e-37 | 139 |
MsaG045408 | AT4G37180.3 | 34.722 | 288 | 136 | 8 | 7 | 285 | 16 | 260 | 5.44e-35 | 130 |
MsaG045408 | AT3G25790.1 | 47.239 | 163 | 76 | 3 | 181 | 333 | 140 | 302 | 4.24e-34 | 130 |
MsaG045408 | AT3G25790.1 | 28.409 | 176 | 76 | 6 | 19 | 146 | 1 | 174 | 1.69e-11 | 65.5 |
MsaG045408 | AT1G13300.1 | 74.118 | 85 | 20 | 2 | 234 | 316 | 180 | 264 | 5.17e-34 | 129 |
MsaG045408 | AT1G49560.1 | 64.706 | 85 | 25 | 2 | 231 | 314 | 188 | 268 | 9.32e-28 | 112 |
MsaG045408 | AT3G25790.2 | 49.533 | 107 | 52 | 1 | 181 | 285 | 140 | 246 | 1.08e-20 | 91.3 |
MsaG045408 | AT3G25790.2 | 28.409 | 176 | 76 | 6 | 19 | 146 | 1 | 174 | 2.77e-11 | 63.9 |
MsaG045408 | AT1G49560.2 | 76.364 | 55 | 13 | 0 | 231 | 285 | 188 | 242 | 1.33e-20 | 90.9 |
MsaG045408 | AT4G28610.1 | 53.333 | 90 | 41 | 1 | 224 | 313 | 214 | 302 | 5.76e-19 | 88.6 |
MsaG045408 | AT5G05090.1 | 34.932 | 146 | 75 | 4 | 224 | 366 | 70 | 198 | 1.18e-15 | 77.0 |
MsaG045408 | AT2G20400.2 | 51.899 | 79 | 37 | 1 | 235 | 313 | 231 | 308 | 1.77e-14 | 75.1 |
MsaG045408 | AT2G20400.1 | 51.899 | 79 | 36 | 1 | 235 | 313 | 231 | 307 | 2.68e-14 | 74.3 |
MsaG045408 | AT3G46640.2 | 34.507 | 142 | 65 | 3 | 203 | 318 | 86 | 225 | 6.10e-14 | 72.8 |
MsaG045408 | AT3G46640.1 | 34.507 | 142 | 65 | 3 | 203 | 318 | 86 | 225 | 6.10e-14 | 72.8 |
MsaG045408 | AT2G40970.1 | 35.200 | 125 | 66 | 2 | 231 | 355 | 101 | 210 | 7.18e-14 | 71.2 |
MsaG045408 | AT3G46640.3 | 34.507 | 142 | 65 | 3 | 203 | 318 | 86 | 225 | 7.54e-14 | 72.4 |
MsaG045408 | AT3G10760.1 | 52.381 | 63 | 29 | 1 | 231 | 293 | 101 | 162 | 1.08e-13 | 72.0 |
MsaG045408 | AT5G59570.2 | 49.231 | 65 | 32 | 1 | 229 | 293 | 135 | 198 | 2.25e-13 | 70.9 |
MsaG045408 | AT5G59570.1 | 49.231 | 65 | 32 | 1 | 229 | 293 | 135 | 198 | 2.25e-13 | 70.9 |
MsaG045408 | AT2G20570.1 | 36.486 | 148 | 62 | 5 | 163 | 292 | 76 | 209 | 2.51e-13 | 71.6 |
MsaG045408 | AT2G06020.1 | 58.182 | 55 | 23 | 0 | 235 | 289 | 86 | 140 | 5.90e-13 | 69.7 |
MsaG045408 | AT5G29000.1 | 43.820 | 89 | 48 | 1 | 217 | 303 | 168 | 256 | 1.34e-12 | 68.9 |
MsaG045408 | AT5G29000.3 | 43.820 | 89 | 48 | 1 | 217 | 303 | 168 | 256 | 1.34e-12 | 68.9 |
MsaG045408 | AT5G29000.2 | 43.820 | 89 | 48 | 1 | 217 | 303 | 211 | 299 | 1.41e-12 | 69.3 |
MsaG045408 | AT3G04030.1 | 55.172 | 58 | 26 | 0 | 232 | 289 | 42 | 99 | 1.54e-12 | 68.9 |
MsaG045408 | AT5G18240.2 | 56.897 | 58 | 25 | 0 | 232 | 289 | 42 | 99 | 1.73e-12 | 68.9 |
MsaG045408 | AT5G18240.3 | 56.897 | 58 | 25 | 0 | 232 | 289 | 42 | 99 | 1.73e-12 | 68.9 |
MsaG045408 | AT3G04030.3 | 55.172 | 58 | 26 | 0 | 232 | 289 | 42 | 99 | 1.90e-12 | 68.9 |
MsaG045408 | AT5G18240.5 | 56.897 | 58 | 25 | 0 | 232 | 289 | 42 | 99 | 1.98e-12 | 68.6 |
MsaG045408 | AT5G18240.1 | 56.897 | 58 | 25 | 0 | 232 | 289 | 42 | 99 | 2.07e-12 | 68.6 |
MsaG045408 | AT5G18240.4 | 56.897 | 58 | 25 | 0 | 232 | 289 | 42 | 99 | 2.07e-12 | 68.6 |
MsaG045408 | AT2G02060.2 | 57.692 | 52 | 22 | 0 | 237 | 288 | 31 | 82 | 2.52e-12 | 67.0 |
MsaG045408 | AT2G02060.1 | 57.692 | 52 | 22 | 0 | 237 | 288 | 31 | 82 | 2.52e-12 | 67.0 |
MsaG045408 | AT5G58080.1 | 50.000 | 62 | 30 | 1 | 232 | 293 | 191 | 251 | 2.64e-12 | 68.9 |
MsaG045408 | AT5G29000.4 | 43.678 | 87 | 47 | 1 | 217 | 301 | 211 | 297 | 3.76e-12 | 67.4 |
MsaG045408 | AT2G38300.1 | 55.769 | 52 | 23 | 0 | 237 | 288 | 56 | 107 | 4.06e-12 | 67.4 |
MsaG045408 | AT2G01760.3 | 50.769 | 65 | 31 | 1 | 234 | 298 | 134 | 197 | 5.19e-12 | 67.0 |
MsaG045408 | AT3G13040.3 | 51.613 | 62 | 30 | 0 | 233 | 294 | 239 | 300 | 5.42e-12 | 67.8 |
MsaG045408 | AT3G13040.1 | 51.613 | 62 | 30 | 0 | 233 | 294 | 239 | 300 | 5.42e-12 | 67.8 |
MsaG045408 | AT3G13040.2 | 51.613 | 62 | 30 | 0 | 233 | 294 | 239 | 300 | 5.42e-12 | 67.8 |
MsaG045408 | AT2G01760.2 | 50.769 | 65 | 31 | 1 | 234 | 298 | 227 | 290 | 7.64e-12 | 67.0 |
MsaG045408 | AT2G01760.1 | 50.769 | 65 | 31 | 1 | 234 | 298 | 199 | 262 | 7.94e-12 | 66.6 |
MsaG045408 | AT2G01060.1 | 49.296 | 71 | 35 | 1 | 230 | 299 | 9 | 79 | 9.87e-12 | 65.9 |
MsaG045408 | AT5G45580.1 | 56.364 | 55 | 24 | 0 | 235 | 289 | 7 | 61 | 1.30e-11 | 65.1 |
MsaG045408 | AT5G45580.2 | 56.364 | 55 | 24 | 0 | 235 | 289 | 23 | 77 | 1.47e-11 | 65.1 |
MsaG045408 | AT3G16857.3 | 53.333 | 60 | 27 | 1 | 234 | 293 | 166 | 224 | 1.78e-11 | 66.2 |
MsaG045408 | AT1G14600.1 | 55.769 | 52 | 23 | 0 | 237 | 288 | 25 | 76 | 2.10e-11 | 64.3 |
MsaG045408 | AT3G16857.2 | 53.333 | 60 | 27 | 1 | 234 | 293 | 236 | 294 | 2.43e-11 | 65.9 |
MsaG045408 | AT3G16857.1 | 53.333 | 60 | 27 | 1 | 234 | 293 | 236 | 294 | 2.47e-11 | 65.9 |
MsaG045408 | AT3G04450.3 | 51.667 | 60 | 29 | 0 | 235 | 294 | 238 | 297 | 2.51e-11 | 64.7 |
MsaG045408 | AT5G06800.3 | 51.667 | 60 | 29 | 0 | 235 | 294 | 192 | 251 | 2.63e-11 | 64.3 |
MsaG045408 | AT3G04450.1 | 45.833 | 72 | 39 | 0 | 235 | 306 | 238 | 309 | 2.66e-11 | 65.5 |
MsaG045408 | AT3G04450.4 | 45.833 | 72 | 39 | 0 | 235 | 306 | 198 | 269 | 2.99e-11 | 65.1 |
MsaG045408 | AT3G04450.2 | 45.833 | 72 | 39 | 0 | 235 | 306 | 198 | 269 | 2.99e-11 | 65.1 |
MsaG045408 | AT2G42660.1 | 46.250 | 80 | 41 | 1 | 225 | 302 | 38 | 117 | 5.15e-11 | 63.2 |
MsaG045408 | AT1G67710.2 | 47.887 | 71 | 37 | 0 | 223 | 293 | 116 | 186 | 6.84e-11 | 64.3 |
MsaG045408 | AT1G67710.3 | 47.887 | 71 | 37 | 0 | 223 | 293 | 107 | 177 | 6.95e-11 | 64.3 |
MsaG045408 | AT5G06800.1 | 51.667 | 60 | 29 | 0 | 235 | 294 | 192 | 251 | 7.09e-11 | 63.9 |
MsaG045408 | AT5G06800.2 | 51.667 | 60 | 29 | 0 | 235 | 294 | 192 | 251 | 7.17e-11 | 63.9 |
MsaG045408 | AT4G18020.8 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.47e-11 | 64.3 |
MsaG045408 | AT4G18020.11 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.47e-11 | 64.3 |
MsaG045408 | AT4G18020.4 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.47e-11 | 64.3 |
MsaG045408 | AT4G18020.5 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.47e-11 | 64.3 |
MsaG045408 | AT4G18020.10 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.47e-11 | 64.3 |
MsaG045408 | AT4G18020.7 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.47e-11 | 64.3 |
MsaG045408 | AT4G18020.3 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.98e-11 | 64.3 |
MsaG045408 | AT4G18020.2 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.98e-11 | 64.3 |
MsaG045408 | AT4G18020.1 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.98e-11 | 64.3 |
MsaG045408 | AT4G18020.6 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.98e-11 | 64.3 |
MsaG045408 | AT4G18020.9 | 36.364 | 110 | 67 | 3 | 187 | 296 | 250 | 356 | 7.98e-11 | 64.3 |
MsaG045408 | AT1G32240.2 | 51.724 | 58 | 28 | 0 | 231 | 288 | 209 | 266 | 9.37e-11 | 63.5 |
MsaG045408 | AT1G67710.1 | 47.887 | 71 | 37 | 0 | 223 | 293 | 181 | 251 | 9.86e-11 | 63.9 |
Find 86 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAACTCCCTTATCTGTTT+TGG | 0.218983 | 8:-72435014 | None:intergenic |
AATGATAACAATAACAATAT+TGG | 0.280258 | 8:+72434117 | MsaT045408.1:CDS |
TGGAGCCAAACAAGTGAATT+AGG | 0.287496 | 8:+72434060 | MsaT045408.1:CDS |
TTGTTCCTAATTCACTTGTT+TGG | 0.309917 | 8:-72434065 | None:intergenic |
TTCTTGCTTTCCTATGAGTT+TGG | 0.321167 | 8:-72434389 | None:intergenic |
GGATGACAAGTGCACAATTA+TGG | 0.322662 | 8:+72434040 | MsaT045408.1:CDS |
AGGGAGTTGATGAAGGTTGA+TGG | 0.335126 | 8:+72435026 | MsaT045408.1:CDS |
GGTATGAATTCTTCTAGAAT+TGG | 0.343936 | 8:-72433946 | None:intergenic |
GCTCCACCATTTCTATGTTT+AGG | 0.345291 | 8:-72434153 | None:intergenic |
TGTGCTGCAGTTGCATATTC+TGG | 0.345650 | 8:-72435375 | None:intergenic |
CATGCTGGAGAGGTAGAAAA+AGG | 0.354964 | 8:+72434276 | MsaT045408.1:CDS |
TTATTATTGAACAGAAATAT+AGG | 0.370436 | 8:+72435268 | MsaT045408.1:intron |
TCCATGTTACTGAAATCATT+TGG | 0.380670 | 8:+72433591 | MsaT045408.1:CDS |
ATGTATGTGATAAGGCAAAT+TGG | 0.383284 | 8:+72434019 | MsaT045408.1:CDS |
GAAGTTGATCATCAAGGAAA+AGG | 0.397063 | 8:+72434318 | MsaT045408.1:CDS |
CCAAGTCCAAGTGCACAAAA+TGG | 0.410271 | 8:+72435306 | MsaT045408.1:CDS |
ACAAATCTACGGTGCAAGTC+TGG | 0.427901 | 8:-72434423 | None:intergenic |
GGAGGAACCCCTACTCTCTA+TGG | 0.427913 | 8:+72435402 | MsaT045408.1:CDS |
GATGATGCTAATTGCTTCAC+TGG | 0.429693 | 8:-72433967 | None:intergenic |
GGGTTGGAGAGTATCGAAAA+TGG | 0.429853 | 8:+72435600 | MsaT045408.1:CDS |
GTAGAAGCTAGTGCTAGTTC+AGG | 0.432544 | 8:-72434231 | None:intergenic |
GGAAGTAGCTGCTGCGGCGG+CGG | 0.442713 | 8:-72435504 | None:intergenic |
ACAATTCAAACCAAACTCAT+AGG | 0.443130 | 8:+72434379 | MsaT045408.1:CDS |
GTTAATGCTCTTCAAATGCT+TGG | 0.449127 | 8:+72434444 | MsaT045408.1:CDS |
AAATAATAATGTATGTGATA+AGG | 0.450078 | 8:+72434011 | MsaT045408.1:CDS |
ATTAGTCCTAAACATAGAAA+TGG | 0.460300 | 8:+72434147 | MsaT045408.1:CDS |
CACATGTCTCCGGTGAACCT+TGG | 0.465967 | 8:-72435572 | None:intergenic |
GGCAACACCAAAACAGATAA+GGG | 0.469043 | 8:+72435007 | MsaT045408.1:CDS |
AACCCGTCTCCACATGTCTC+CGG | 0.479058 | 8:-72435582 | None:intergenic |
TGAGTTTGTGATGATGCTAC+TGG | 0.486233 | 8:-72434345 | None:intergenic |
CAGTAGTGTAGTACTGATCT+TGG | 0.489595 | 8:-72435479 | None:intergenic |
TTCACCATCTGAACTAGGCT+TGG | 0.491547 | 8:+72433548 | MsaT045408.1:CDS |
CCACATTACTGCACTGCTCC+AGG | 0.496026 | 8:+72435456 | MsaT045408.1:CDS |
GCCACACGGCCAAGGTTCAC+CGG | 0.500443 | 8:+72435563 | MsaT045408.1:CDS |
ATTAGCATCATCAGAAACAT+TGG | 0.504933 | 8:+72433978 | MsaT045408.1:CDS |
CAAATGCTTGGTGGATCTCA+AGG | 0.514435 | 8:+72434456 | MsaT045408.1:CDS |
GATGACCACCATAGAGAGTA+GGG | 0.520807 | 8:-72435410 | None:intergenic |
GAAGAGGATAAGAAACATGC+TGG | 0.521576 | 8:+72434261 | MsaT045408.1:CDS |
GTGTAGTACTGATCTTGGCC+TGG | 0.523675 | 8:-72435474 | None:intergenic |
TGGCAACACCAAAACAGATA+AGG | 0.524534 | 8:+72435006 | MsaT045408.1:CDS |
GGCGGAAGTAGCTGCTGCGG+CGG | 0.525740 | 8:-72435507 | None:intergenic |
AAGTTGATCATCAAGGAAAA+GGG | 0.527682 | 8:+72434319 | MsaT045408.1:CDS |
TGCATGCAACTTCTCACAAA+CGG | 0.528281 | 8:+72433711 | MsaT045408.1:CDS |
AGAGTGAGATGATGAGAAGT+AGG | 0.531857 | 8:-72435432 | None:intergenic |
AAAACTACTAGCTGTGCTGC+TGG | 0.531932 | 8:-72435333 | None:intergenic |
CAAGCGTTTAGATCGAATCA+AGG | 0.533730 | 8:+72433916 | MsaT045408.1:CDS |
GAAGAGCATTAACAAATCTA+CGG | 0.536877 | 8:-72434434 | None:intergenic |
TCCAAATGATTTCAGTAACA+TGG | 0.537583 | 8:-72433592 | None:intergenic |
CACCGGAGACATGTGGAGAC+GGG | 0.540363 | 8:+72435580 | MsaT045408.1:CDS |
ATGGCTTCACCATCTGAACT+AGG | 0.543239 | 8:+72433543 | MsaT045408.1:CDS |
CAATCCAAGCCTAGTTCAGA+TGG | 0.544635 | 8:-72433552 | None:intergenic |
TGAAGTTAAAAGCCATCTGC+AGG | 0.544962 | 8:+72435061 | MsaT045408.1:CDS |
AATGCTCTTCAAATGCTTGG+TGG | 0.549954 | 8:+72434447 | MsaT045408.1:CDS |
ACAGATAAGGGAGTTGATGA+AGG | 0.551674 | 8:+72435019 | MsaT045408.1:CDS |
GGATGACCACCATAGAGAGT+AGG | 0.564523 | 8:-72435411 | None:intergenic |
GGATAAGAAACATGCTGGAG+AGG | 0.570240 | 8:+72434266 | MsaT045408.1:CDS |
TATGCAACTGCAGCACATGC+AGG | 0.576335 | 8:+72435381 | MsaT045408.1:CDS |
GAGAGAGAATTACCTGCAGA+TGG | 0.576980 | 8:-72435073 | None:intergenic |
TCACCGGAGACATGTGGAGA+CGG | 0.576988 | 8:+72435579 | MsaT045408.1:CDS |
GGGAATGAAGTTGATCATCA+AGG | 0.578253 | 8:+72434312 | MsaT045408.1:CDS |
AGTCCTAAACATAGAAATGG+TGG | 0.579197 | 8:+72434150 | MsaT045408.1:CDS |
GGAGACATGTGGAGACGGGT+TGG | 0.587274 | 8:+72435584 | MsaT045408.1:CDS |
AGAAATAACTCCTCTTGTCA+AGG | 0.588185 | 8:+72434198 | MsaT045408.1:CDS |
GCTGCAGTTGCATATTCTGG+TGG | 0.594788 | 8:-72435372 | None:intergenic |
TGAACCTTGGCCGTGTGGCG+TGG | 0.595965 | 8:-72435559 | None:intergenic |
ATAGGAAAGCAAGAAGGTGT+TGG | 0.602381 | 8:+72434397 | MsaT045408.1:CDS |
AAGACCACGCCACACGGCCA+AGG | 0.603883 | 8:+72435555 | MsaT045408.1:CDS |
CTGCAGTTGCATATTCTGGT+GGG | 0.605931 | 8:-72435371 | None:intergenic |
AGTAACATGGAGTAGCTATG+TGG | 0.617118 | 8:-72433579 | None:intergenic |
TGGTGCATGTGATGAGGTGG+CGG | 0.620813 | 8:-72435525 | None:intergenic |
AACTCCTCTTGTCAAGGACA+AGG | 0.622383 | 8:+72434204 | MsaT045408.1:CDS |
GTGGCGTGGTCTTGTAGACA+TGG | 0.624325 | 8:-72435545 | None:intergenic |
GGTGGCGGAAGTAGCTGCTG+CGG | 0.626284 | 8:-72435510 | None:intergenic |
AAGACCTTGTCCTTGACAAG+AGG | 0.632597 | 8:-72434208 | None:intergenic |
AAACTCATAGGAAAGCAAGA+AGG | 0.642113 | 8:+72434391 | MsaT045408.1:CDS |
TCCGGTGAACCTTGGCCGTG+TGG | 0.647253 | 8:-72435564 | None:intergenic |
GTCTACAAGACCACGCCACA+CGG | 0.648472 | 8:+72435549 | MsaT045408.1:CDS |
ACATGGTGCATGTGATGAGG+TGG | 0.655489 | 8:-72435528 | None:intergenic |
CCTGGAGCAGTGCAGTAATG+TGG | 0.657609 | 8:-72435456 | None:intergenic |
GTGAGAAGTTGCATGCAGAG+AGG | 0.660628 | 8:-72433705 | None:intergenic |
CAAGGTTCACCGGAGACATG+TGG | 0.663048 | 8:+72435573 | MsaT045408.1:CDS |
TAGACATGGTGCATGTGATG+AGG | 0.673422 | 8:-72435531 | None:intergenic |
GCAACTGCAGCACATGCAGG+AGG | 0.687455 | 8:+72435384 | MsaT045408.1:CDS |
GGAACCCCTACTCTCTATGG+TGG | 0.690464 | 8:+72435405 | MsaT045408.1:CDS |
TATCGAAAATGGAAAGACGT+CGG | 0.698881 | 8:+72435611 | MsaT045408.1:CDS |
ATGACCACCATAGAGAGTAG+GGG | 0.721767 | 8:-72435409 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 72433543 | 72435638 | 72433543 | ID=MsaG045408 |
Chr8 | mRNA | 72433543 | 72435638 | 72433543 | ID=MsaT045408.1;Parent=MsaG045408 |
Chr8 | exon | 72433543 | 72433732 | 72433543 | ID=MsaT045408.1.exon1;Parent=MsaT045408.1 |
Chr8 | CDS | 72433543 | 72433732 | 72433543 | ID=cds.MsaT045408.1;Parent=MsaT045408.1 |
Chr8 | exon | 72433890 | 72434477 | 72433890 | ID=MsaT045408.1.exon2;Parent=MsaT045408.1 |
Chr8 | CDS | 72433890 | 72434477 | 72433890 | ID=cds.MsaT045408.1;Parent=MsaT045408.1 |
Chr8 | exon | 72435006 | 72435082 | 72435006 | ID=MsaT045408.1.exon3;Parent=MsaT045408.1 |
Chr8 | CDS | 72435006 | 72435082 | 72435006 | ID=cds.MsaT045408.1;Parent=MsaT045408.1 |
Chr8 | exon | 72435282 | 72435638 | 72435282 | ID=MsaT045408.1.exon4;Parent=MsaT045408.1 |
Chr8 | CDS | 72435282 | 72435638 | 72435282 | ID=cds.MsaT045408.1;Parent=MsaT045408.1 |
Gene Sequence |
Protein sequence |