AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG045456


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045456 MtrunA17_Chr4g0063311 98.980 490 3 1 1 488 1 490 0.0 1002
MsaG045456 MtrunA17_Chr2g0290691 56.219 402 147 7 64 455 179 561 1.37e-156 458
MsaG045456 MtrunA17_Chr8g0335351 55.335 403 157 6 56 454 337 720 1.11e-150 448
MsaG045456 MtrunA17_Chr7g0250631 53.941 406 159 7 56 455 331 714 1.50e-150 447
MsaG045456 MtrunA17_Chr7g0227331 55.750 400 152 7 64 455 207 589 1.64e-148 437
MsaG045456 MtrunA17_Chr7g0266031 54.637 399 154 8 63 455 466 843 2.32e-144 435
MsaG045456 MtrunA17_Chr6g0449401 50.000 458 162 8 42 455 216 650 2.42e-144 429
MsaG045456 MtrunA17_Chr1g0179101 53.676 408 160 8 56 455 435 821 1.53e-143 432
MsaG045456 MtrunA17_Chr8g0381091 50.995 402 167 6 64 460 52 428 5.82e-139 407
MsaG045456 MtrunA17_Chr2g0285711 49.188 431 180 7 64 488 57 454 8.50e-138 404
MsaG045456 MtrunA17_Chr3g0080101 51.117 403 168 8 61 455 387 768 8.80e-138 416
MsaG045456 MtrunA17_Chr8g0356291 47.748 444 198 8 25 455 56 478 1.67e-133 396
MsaG045456 MtrunA17_Chr2g0309421 46.085 447 210 9 17 455 103 526 4.69e-133 397
MsaG045456 MtrunA17_Chr2g0321101 50.129 387 157 8 73 447 71 433 3.25e-123 367
MsaG045456 MtrunA17_Chr2g0312641 44.941 425 186 9 33 454 40 419 1.03e-121 364
MsaG045456 MtrunA17_Chr8g0369091 41.388 389 168 6 64 452 572 900 5.72e-101 323
MsaG045456 MtrunA17_Chr4g0030361 41.944 391 164 7 64 454 282 609 1.32e-100 315
MsaG045456 MtrunA17_Chr2g0327561 42.711 391 172 7 64 454 601 939 5.52e-95 308
MsaG045456 MtrunA17_Chr2g0329011 39.037 374 174 6 86 456 12 334 9.05e-79 250
MsaG045456 MtrunA17_Chr4g0032761 37.500 392 189 10 88 456 12 370 1.73e-77 248
MsaG045456 MtrunA17_Chr8g0338741 38.281 384 176 11 91 455 20 361 3.41e-73 238
MsaG045456 MtrunA17_Chr7g0234641 35.806 391 202 11 81 458 1 355 7.87e-67 221
MsaG045456 MtrunA17_Chr4g0018201 31.818 374 196 9 83 456 751 1065 1.01e-51 189
MsaG045456 MtrunA17_Chr5g0428981 31.818 374 196 9 83 456 755 1069 2.46e-51 187
MsaG045456 MtrunA17_Chr6g0478601 30.000 390 213 9 83 471 103 433 8.30e-51 181
MsaG045456 MtrunA17_Chr1g0183651 31.316 380 206 12 79 455 108 435 3.87e-47 171
MsaG045456 MtrunA17_Chr1g0187581 31.135 379 209 11 79 455 105 433 2.62e-46 169
MsaG045456 MtrunA17_Chr1g0167311 30.025 393 220 10 74 464 101 440 2.23e-45 166
MsaG045456 MtrunA17_Chr7g0261491 30.909 385 205 13 79 455 108 439 6.41e-43 160
MsaG045456 MtrunA17_Chr3g0135951 29.650 371 209 13 79 443 82 406 7.48e-42 156
MsaG045456 MtrunA17_Chr1g0167351 29.427 384 217 11 74 455 96 427 7.02e-40 151
MsaG045456 MtrunA17_Chr1g0153321 28.158 380 222 10 79 456 96 426 1.22e-39 150
MsaG045456 MtrunA17_Chr2g0299781 28.184 369 217 9 79 443 101 425 8.09e-38 145
MsaG045456 MtrunA17_Chr1g0197721 26.790 377 194 7 79 454 39 334 7.94e-35 136
MsaG045456 MtrunA17_Chr7g0245031 38.509 161 92 4 85 245 142 295 8.76e-25 107
MsaG045456 MtrunA17_Chr7g0245031 37.179 156 82 5 327 479 301 443 1.29e-21 97.4
MsaG045456 MtrunA17_Chr4g0059751 39.552 134 69 3 327 457 249 373 2.04e-23 102
MsaG045456 MtrunA17_Chr4g0059751 32.727 165 103 3 83 243 81 241 4.89e-22 98.2
MsaG045456 MtrunA17_Chr8g0351491 26.923 338 151 12 88 423 13 256 4.99e-20 90.1
MsaG045456 MtrunA17_Chr3g0140631 31.720 186 116 3 61 244 7 183 1.73e-18 85.9
MsaG045456 MtrunA17_Chr3g0140631 35.052 97 56 1 327 423 188 277 7.17e-12 66.2
MsaG045456 MtrunA17_Chr3g0125381 39.496 119 61 2 321 439 100 207 8.63e-18 82.0
MsaG045456 MtrunA17_Chr6g0486661 37.226 137 71 4 325 456 910 1036 1.13e-17 86.7
MsaG045456 MtrunA17_Chr2g0286501 24.405 336 164 8 88 423 46 291 3.29e-17 85.1
MsaG045456 MtrunA17_Chr4g0013131 26.904 197 122 5 84 279 5 180 1.07e-15 79.3
MsaG045456 MtrunA17_Chr7g0244521 26.396 197 125 5 83 279 4 180 2.26e-15 78.2
MsaG045456 MtrunA17_Chr3g0107051 29.630 189 113 5 91 279 21 189 7.89e-15 76.6
MsaG045456 MtrunA17_Chr1g0188031 27.861 201 109 7 88 279 17 190 2.04e-14 75.1
MsaG045456 MtrunA17_Chr5g0432491 29.101 189 115 5 91 279 23 192 2.80e-14 74.7
MsaG045456 MtrunA17_Chr3g0114511 26.396 197 123 5 83 279 24 198 3.72e-14 74.3
MsaG045456 MtrunA17_Chr2g0304111 25.758 198 128 5 82 279 14 192 5.42e-14 73.9
MsaG045456 MtrunA17_Chr4g0074111 28.042 189 116 5 91 279 18 186 7.35e-14 73.2
MsaG045456 MtrunA17_Chr8g0353621 30.189 159 102 3 88 245 7 157 9.34e-14 71.6
MsaG045456 MtrunA17_Chr8g0353621 39.175 97 52 1 327 423 161 250 1.55e-13 70.9
MsaG045456 MtrunA17_Chr2g0302431 27.500 200 126 6 80 279 9 189 1.39e-13 72.8
MsaG045456 MtrunA17_Chr3g0107011 26.000 200 116 6 86 279 9 182 1.73e-13 72.4
MsaG045456 MtrunA17_Chr1g0203881 31.447 159 98 4 89 243 39 190 2.44e-13 72.0
MsaG045456 MtrunA17_Chr1g0200601 30.000 190 114 6 59 244 6 180 3.53e-13 71.6
MsaG045456 MtrunA17_Chr1g0205421 27.500 200 119 7 83 279 4 180 4.72e-13 71.2
MsaG045456 MtrunA17_Chr2g0284031 27.604 192 119 4 88 279 28 199 6.03e-13 70.9
MsaG045456 MtrunA17_Chr5g0428031 25.397 189 120 4 91 279 9 176 6.30e-13 70.5
MsaG045456 MtrunA17_Chr8g0346071 25.641 195 122 5 85 279 13 184 7.45e-13 70.5
MsaG045456 MtrunA17_Chr1g0190831 27.215 158 106 4 88 243 1 151 7.84e-13 70.9
MsaG045456 MtrunA17_Chr5g0441011 26.667 195 122 6 85 279 9 182 9.17e-13 70.1
MsaG045456 MtrunA17_Chr7g0274941 44.211 95 47 2 332 425 176 265 1.57e-12 68.2
MsaG045456 MtrunA17_Chr2g0321841 26.380 163 111 4 88 247 1 157 1.65e-12 70.1
MsaG045456 MtrunA17_Chr5g0432471 25.381 197 123 6 85 279 6 180 1.66e-12 69.3
MsaG045456 MtrunA17_Chr4g0001331 25.510 196 122 5 86 279 15 188 2.14e-12 68.9
MsaG045456 MtrunA17_Chr8g0346081 25.128 195 123 5 85 279 13 184 3.87e-12 68.2
MsaG045456 MtrunA17_Chr2g0284011 26.263 198 126 6 82 279 3 180 4.16e-12 68.2
MsaG045456 MtrunA17_Chr3g0091311 28.571 161 107 4 83 243 4 156 4.35e-12 66.2
MsaG045456 MtrunA17_Chr1g0166101 27.723 202 113 7 85 279 18 193 6.71e-12 67.4
MsaG045456 MtrunA17_Chr8g0379091 26.804 194 118 5 88 279 23 194 1.03e-11 67.0
MsaG045456 MtrunA17_Chr1g0150321 24.855 173 105 4 117 279 24 181 3.80e-11 65.1
MsaG045456 MtrunA17_Chr4g0025671 25.478 157 110 3 88 243 5 155 4.33e-11 65.5
MsaG045456 MtrunA17_Chr4g0047191 32.000 100 68 0 144 243 95 194 8.11e-11 63.5
MsaG045456 MtrunA17_Chr4g0047211 32.000 100 68 0 144 243 90 189 8.12e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045456 AT2G26700.1 59.515 536 158 15 1 488 1 525 0.0 599
MsaG045456 AT4G26610.1 53.153 444 188 5 15 455 47 473 4.64e-158 458
MsaG045456 AT5G47750.1 57.250 400 144 7 64 455 164 544 1.46e-156 457
MsaG045456 AT5G55910.2 53.670 436 172 10 64 488 82 498 1.70e-154 449
MsaG045456 AT5G55910.1 53.670 436 172 10 64 488 82 498 1.70e-154 449
MsaG045456 AT5G40030.1 54.478 402 148 8 63 455 85 460 6.49e-148 432
MsaG045456 AT3G52890.2 52.656 433 181 8 30 455 481 896 2.02e-143 435
MsaG045456 AT3G52890.4 52.656 433 181 8 30 455 481 896 2.02e-143 435
MsaG045456 AT3G52890.1 52.656 433 181 8 30 455 481 896 2.02e-143 435
MsaG045456 AT3G52890.3 52.656 433 181 8 30 455 481 896 2.02e-143 435
MsaG045456 AT2G44830.2 52.607 422 177 7 39 455 311 714 3.01e-143 429
MsaG045456 AT2G44830.3 52.607 422 177 7 39 455 311 714 3.01e-143 429
MsaG045456 AT2G44830.1 52.607 422 177 7 39 455 311 714 3.01e-143 429
MsaG045456 AT2G36350.1 55.025 398 159 7 64 455 532 915 1.31e-140 428
MsaG045456 AT5G03640.2 48.465 456 176 10 15 455 484 895 3.07e-140 426
MsaG045456 AT5G03640.1 48.465 456 176 10 15 455 484 895 3.07e-140 426
MsaG045456 AT2G34650.1 48.946 427 178 8 64 488 50 438 1.38e-138 406
MsaG045456 AT3G12690.1 50.000 406 177 6 53 455 144 526 1.75e-137 408
MsaG045456 AT3G12690.3 50.000 406 177 6 53 455 144 526 1.75e-137 408
MsaG045456 AT3G12690.2 50.000 406 177 6 53 455 144 526 1.75e-137 408
MsaG045456 AT1G79250.1 50.990 404 163 6 63 455 118 497 2.13e-137 407
MsaG045456 AT1G79250.3 50.990 404 163 6 63 455 118 497 2.13e-137 407
MsaG045456 AT1G79250.2 50.990 404 163 6 63 455 118 497 2.13e-137 407
MsaG045456 AT1G79250.4 50.990 404 163 6 63 455 118 497 2.13e-137 407
MsaG045456 AT1G16440.1 50.255 392 171 5 64 455 86 453 5.29e-134 397
MsaG045456 AT3G27580.2 50.739 406 161 10 64 455 153 533 4.93e-132 394
MsaG045456 AT3G27580.1 50.739 406 161 10 64 455 153 533 4.93e-132 394
MsaG045456 AT3G44610.1 49.867 377 142 9 91 446 71 421 1.15e-120 361
MsaG045456 AT3G14370.1 43.207 449 207 7 7 453 9 411 3.68e-117 353
MsaG045456 AT1G53700.1 49.600 375 143 7 83 454 85 416 3.78e-117 353
MsaG045456 AT5G58140.6 44.473 389 154 9 65 452 551 878 4.62e-105 334
MsaG045456 AT5G58140.7 44.473 389 154 9 65 452 551 878 4.62e-105 334
MsaG045456 AT5G58140.5 44.473 389 154 9 65 452 551 878 4.62e-105 334
MsaG045456 AT5G58140.2 44.473 389 154 9 65 452 551 878 4.62e-105 334
MsaG045456 AT5G58140.1 44.473 389 154 9 65 452 551 878 4.62e-105 334
MsaG045456 AT5G58140.3 44.531 384 151 9 65 447 551 873 4.03e-103 328
MsaG045456 AT3G45780.2 41.432 391 171 7 64 454 636 968 9.64e-94 305
MsaG045456 AT3G45780.1 41.432 391 171 7 64 454 636 968 9.64e-94 305
MsaG045456 AT1G51170.1 40.160 376 185 10 86 455 17 358 1.84e-73 238
MsaG045456 AT4G13000.1 36.802 394 187 12 86 470 15 355 2.67e-72 234
MsaG045456 AT3G20830.1 38.095 378 188 11 88 455 18 359 1.06e-66 220
MsaG045456 AT3G25250.1 37.209 387 177 11 87 456 11 348 7.95e-66 218
MsaG045456 AT1G48490.3 31.383 376 192 11 85 459 822 1132 1.52e-49 183
MsaG045456 AT1G48490.2 31.383 376 192 11 85 459 822 1132 1.52e-49 183
MsaG045456 AT1G48490.1 31.383 376 192 11 85 459 822 1132 1.52e-49 183
MsaG045456 AT1G48490.4 31.383 376 192 11 85 459 823 1133 1.55e-49 183
MsaG045456 AT1G45160.1 32.615 371 188 7 85 455 664 972 6.45e-49 181
MsaG045456 AT1G45160.2 32.615 371 188 7 85 455 664 972 6.83e-49 181
MsaG045456 AT1G30640.3 31.026 390 217 11 76 461 12 353 2.52e-48 173
MsaG045456 AT3G17850.1 29.293 396 220 8 85 479 876 1212 2.57e-48 179
MsaG045456 AT1G30640.2 31.026 390 217 11 76 461 105 446 1.08e-47 173
MsaG045456 AT1G30640.1 31.026 390 217 11 76 461 105 446 1.08e-47 173
MsaG045456 AT4G33080.2 30.081 369 211 10 79 443 82 407 3.50e-47 171
MsaG045456 AT4G33080.1 30.081 369 211 10 79 443 82 407 3.96e-47 171
MsaG045456 AT5G62310.1 29.383 405 222 12 58 456 715 1061 8.08e-45 169
MsaG045456 AT2G20470.3 29.815 379 212 10 79 455 112 438 1.62e-42 159
MsaG045456 AT3G23310.1 29.134 381 216 12 79 455 108 438 2.82e-42 158
MsaG045456 AT2G20470.2 29.815 379 212 10 79 455 112 438 3.66e-42 158
MsaG045456 AT2G20470.1 29.815 379 212 10 79 455 112 438 3.66e-42 158
MsaG045456 AT4G14350.2 29.319 382 214 12 79 456 107 436 1.11e-41 156
MsaG045456 AT4G14350.1 29.319 382 214 12 79 456 107 436 1.11e-41 156
MsaG045456 AT4G14350.4 29.319 382 214 12 79 456 107 436 1.11e-41 156
MsaG045456 AT4G14350.3 29.319 382 214 12 79 456 107 436 1.48e-41 156
MsaG045456 AT5G04510.2 29.080 337 162 6 122 457 70 330 1.45e-40 150
MsaG045456 AT5G04510.1 29.080 337 162 6 122 457 70 330 2.51e-40 152
MsaG045456 AT3G10540.1 28.783 337 163 6 122 457 71 331 1.01e-39 150
MsaG045456 AT5G09890.2 28.997 369 209 9 79 443 90 409 4.25e-39 149
MsaG045456 AT5G09890.1 28.997 369 209 9 79 443 90 409 4.28e-39 149
MsaG045456 AT1G03920.2 29.275 386 213 12 79 457 12 344 4.65e-39 147
MsaG045456 AT1G03920.1 29.275 386 213 12 79 457 125 457 1.80e-38 148
MsaG045456 AT1G03920.3 29.275 386 213 12 79 457 125 457 1.80e-38 148
MsaG045456 AT2G19400.1 28.108 370 216 9 80 443 94 419 4.15e-37 143
MsaG045456 AT5G58140.4 41.912 136 74 2 65 200 551 681 4.00e-30 124
MsaG045456 AT5G04510.3 27.365 296 139 5 122 417 70 289 7.01e-30 119
MsaG045456 AT3G08730.1 37.500 160 93 3 84 243 127 279 1.19e-24 107
MsaG045456 AT3G08730.1 42.222 135 62 6 326 454 286 410 1.03e-22 101
MsaG045456 AT3G08730.2 37.500 160 93 3 84 243 127 279 1.19e-24 107
MsaG045456 AT3G08730.2 42.222 135 62 6 326 454 286 410 1.03e-22 101
MsaG045456 AT3G08720.1 37.500 160 93 3 84 243 133 285 1.91e-24 106
MsaG045456 AT3G08720.1 40.602 133 66 5 327 456 293 415 9.19e-22 98.2
MsaG045456 AT3G08720.3 37.500 160 93 3 84 243 133 285 1.91e-24 106
MsaG045456 AT3G08720.3 40.602 133 66 5 327 456 293 415 9.19e-22 98.2
MsaG045456 AT3G08720.4 37.500 160 93 3 84 243 133 285 1.91e-24 106
MsaG045456 AT3G08720.4 40.602 133 66 5 327 456 293 415 9.19e-22 98.2
MsaG045456 AT3G08720.2 37.500 160 93 3 84 243 133 285 1.91e-24 106
MsaG045456 AT3G08720.2 40.602 133 66 5 327 456 293 415 9.19e-22 98.2
MsaG045456 AT2G20050.1 41.353 133 66 3 327 457 934 1056 1.14e-21 99.4
MsaG045456 AT2G20050.2 41.353 133 66 3 327 457 931 1053 1.20e-21 99.4
MsaG045456 AT2G45490.1 26.113 337 155 10 88 423 19 262 1.70e-19 89.4
MsaG045456 AT5G18700.1 33.735 166 93 5 88 251 1 151 8.59e-18 87.4
MsaG045456 AT2G45490.2 24.918 305 142 8 88 391 19 237 2.07e-15 76.6
MsaG045456 AT4G24400.2 28.571 189 114 6 91 279 9 176 1.14e-14 76.3
MsaG045456 AT4G24400.1 28.571 189 114 6 91 279 9 176 1.31e-14 76.3
MsaG045456 AT1G12680.1 31.013 158 94 4 89 245 105 248 2.01e-14 75.9
MsaG045456 AT5G45820.1 26.904 197 124 5 83 279 4 180 2.23e-14 75.5
MsaG045456 AT5G28290.1 28.481 158 104 4 88 243 1 151 2.68e-14 75.9
MsaG045456 AT5G28290.2 28.481 158 104 4 88 243 1 151 2.68e-14 75.9
MsaG045456 AT5G28290.3 28.481 158 104 4 88 243 1 151 3.01e-14 75.5
MsaG045456 AT4G32830.1 32.927 164 99 3 83 244 23 177 3.51e-14 73.6
MsaG045456 AT4G32830.1 34.021 97 57 1 327 423 182 271 7.79e-11 63.5
MsaG045456 AT2G34180.1 28.500 200 123 5 80 279 46 225 4.45e-14 74.7
MsaG045456 AT5G45810.1 28.125 192 118 5 88 279 25 196 1.09e-13 73.6
MsaG045456 AT2G26980.3 25.980 204 130 6 76 279 1 183 1.34e-13 73.2
MsaG045456 AT2G26980.4 25.980 204 130 6 76 279 11 193 1.37e-13 73.2
MsaG045456 AT5G01810.3 22.449 343 177 8 83 425 4 257 1.51e-13 72.4
MsaG045456 AT2G26980.1 25.980 204 130 6 76 279 1 183 1.67e-13 72.4
MsaG045456 AT5G01810.1 22.449 343 177 8 83 425 4 257 1.79e-13 72.8
MsaG045456 AT5G01810.2 22.449 343 177 8 83 425 4 257 1.79e-13 72.8
MsaG045456 AT3G04810.2 27.215 158 106 4 88 243 1 151 2.16e-13 73.2
MsaG045456 AT3G04810.1 27.215 158 106 4 88 243 1 151 2.16e-13 73.2
MsaG045456 AT3G04810.3 27.215 158 106 4 88 243 1 151 2.16e-13 73.2
MsaG045456 AT1G30270.1 26.455 189 120 5 91 279 31 200 2.72e-13 72.4
MsaG045456 AT2G26980.5 25.980 204 130 6 76 279 1 183 3.25e-13 72.0
MsaG045456 AT1G30270.2 26.455 189 120 5 91 279 31 200 3.25e-13 72.0
MsaG045456 AT2G26980.2 25.980 204 130 6 76 279 1 183 3.43e-13 70.1
MsaG045456 AT1G35670.1 31.250 160 99 5 89 244 24 176 3.77e-13 72.0
MsaG045456 AT2G25880.1 30.864 162 105 2 83 244 17 171 3.96e-13 70.5
MsaG045456 AT2G25880.1 33.673 98 58 1 327 424 176 266 1.96e-11 65.1
MsaG045456 AT3G17510.1 28.125 192 119 6 88 279 17 189 4.76e-13 71.6
MsaG045456 AT5G10930.1 26.131 199 126 8 82 279 3 181 6.13e-13 71.2
MsaG045456 AT1G54510.4 26.582 158 107 4 88 243 1 151 7.24e-13 71.2
MsaG045456 AT1G54510.2 26.582 158 107 4 88 243 1 151 7.24e-13 71.2
MsaG045456 AT1G54510.1 26.582 158 107 4 88 243 1 151 7.24e-13 71.2
MsaG045456 AT1G54510.3 26.582 158 107 4 88 243 1 151 7.24e-13 71.2
MsaG045456 AT4G18700.1 28.125 192 118 5 88 279 23 194 7.94e-13 70.9
MsaG045456 AT2G25880.4 30.864 162 105 2 83 244 30 184 8.20e-13 69.7
MsaG045456 AT2G25880.4 33.673 98 58 1 327 424 189 279 1.67e-11 65.5
MsaG045456 AT4G09570.1 31.250 160 99 5 89 244 23 175 9.41e-13 70.9
MsaG045456 AT5G25110.1 24.873 197 128 5 83 279 35 211 1.09e-12 70.5
MsaG045456 AT2G25880.3 30.864 162 105 2 83 244 78 232 1.36e-12 69.3
MsaG045456 AT2G25880.3 33.673 98 58 1 327 424 237 327 3.73e-11 65.1
MsaG045456 AT5G57630.2 31.056 161 89 7 121 279 37 177 1.37e-12 69.7
MsaG045456 AT5G57630.1 33.083 133 78 5 121 251 37 160 1.47e-12 69.7
MsaG045456 AT1G29230.1 28.125 192 118 5 88 279 71 242 1.55e-12 70.1
MsaG045456 AT1G08650.1 37.624 101 52 2 328 425 172 264 1.73e-12 68.6
MsaG045456 AT1G08650.2 37.624 101 52 2 328 425 172 264 2.15e-12 67.8
MsaG045456 AT1G01140.1 25.641 195 124 6 85 279 15 188 4.97e-12 68.2
MsaG045456 AT1G01140.2 25.641 195 124 6 85 279 15 188 5.42e-12 68.2
MsaG045456 AT5G21326.1 28.426 197 120 8 83 279 7 182 5.59e-12 68.2
MsaG045456 AT1G01140.3 25.641 195 124 6 85 279 15 188 6.11e-12 68.2
MsaG045456 AT3G04530.1 34.000 100 57 2 328 425 168 260 8.10e-12 66.2
MsaG045456 AT2G30360.1 27.979 193 113 6 91 279 21 191 8.23e-12 67.4
MsaG045456 AT5G35410.2 28.025 157 97 3 123 279 38 178 9.39e-12 67.0
MsaG045456 AT3G23000.1 26.601 203 116 7 84 279 18 194 1.10e-11 67.0
MsaG045456 AT2G38490.1 30.208 192 108 7 91 279 28 196 1.28e-11 67.0
MsaG045456 AT5G35410.1 28.025 157 97 3 123 279 38 178 1.37e-11 67.0
MsaG045456 AT2G25880.2 33.673 98 58 1 327 424 144 234 1.48e-11 65.1
MsaG045456 AT4G14580.1 27.919 197 122 6 84 279 14 191 2.70e-11 65.9
MsaG045456 AT5G58380.1 26.289 194 117 7 89 279 10 180 4.31e-11 65.5
MsaG045456 AT3G44200.2 26.380 163 111 4 88 247 5 161 4.61e-11 65.9
MsaG045456 AT3G44200.1 26.380 163 111 4 88 247 5 161 4.61e-11 65.9
MsaG045456 AT3G63280.2 26.582 158 107 4 88 243 1 151 5.53e-11 65.5
MsaG045456 AT3G63280.3 26.582 158 107 4 88 243 1 151 5.53e-11 65.5
MsaG045456 AT3G63280.1 26.582 158 107 4 88 243 1 151 5.53e-11 65.5
MsaG045456 AT2G46700.1 28.662 157 105 4 91 243 143 296 5.98e-11 65.1
MsaG045456 AT3G63280.4 26.582 158 107 4 88 243 55 205 8.85e-11 64.7
MsaG045456 AT5G66210.3 28.931 159 104 4 89 243 60 213 8.89e-11 64.3
MsaG045456 AT5G66210.6 28.931 159 104 4 89 243 60 213 8.93e-11 64.3
MsaG045456 AT5G66210.4 28.931 159 104 4 89 243 60 213 8.93e-11 64.3

Find 105 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTCCAATTCTCTTATT+TGG 0.104650 8:-73025789 None:intergenic
AGAGATGGAGAAGGAGATTT+TGG 0.135883 8:+73024252 MsaT045456.1:CDS
TCATTACTCTTGTTTGGTTA+TGG 0.210794 8:+73024327 MsaT045456.1:CDS
TCATTATTCTCACCTTTAAA+TGG 0.217434 8:-73025642 None:intergenic
CTATCTTTCTTGCTTAATTT+AGG 0.246885 8:-73025936 None:intergenic
CGACTTGGAAGCGGCGATAT+AGG 0.269325 8:+73024115 MsaT045456.1:CDS
TTAGCACCAGAAGTTATATT+AGG 0.281277 8:+73025546 MsaT045456.1:CDS
TAAGAGAATTGGAAGTTGTT+TGG 0.283584 8:+73025794 MsaT045456.1:CDS
TATGGAAGAACACCATTTAA+AGG 0.284829 8:+73025630 MsaT045456.1:CDS
GACTTGGAAGCGGCGATATA+GGG 0.314753 8:+73024116 MsaT045456.1:CDS
TGCTTCTCATTACTCTTGTT+TGG 0.315005 8:+73024321 MsaT045456.1:CDS
TAAGATTAGGAATAGAGTTT+TGG 0.318605 8:+73025911 MsaT045456.1:CDS
AAGAGAATTGGAAGTTGTTT+GGG 0.326939 8:+73025795 MsaT045456.1:CDS
ATTGGTTCAGCTACAAAATC+AGG 0.339583 8:-73025483 None:intergenic
CGCCGCTTCCAAGTCGCTTA+AGG 0.364380 8:-73024108 None:intergenic
AAGAATCCAAATAAGAGAAT+TGG 0.366255 8:+73025783 MsaT045456.1:CDS
GCAACTTGGTTTGCCTTATG+AGG 0.367291 8:-73024022 None:intergenic
TTCTTGTCACTAGGAACCTC+AGG 0.376281 8:-73025888 None:intergenic
TTCAATATCTATGTAAGGTT+TGG 0.384816 8:-73023843 None:intergenic
TTATGCAGCTGAAACACTAT+TGG 0.390562 8:+73025134 MsaT045456.1:CDS
AGATCTTATAAGCAAATTGT+TGG 0.395181 8:+73025758 MsaT045456.1:CDS
AATTGATGTTTAAGCTGAAA+TGG 0.406023 8:-73025966 None:intergenic
TCTCTTACTAAAACATTCTC+TGG 0.406082 8:-73025204 None:intergenic
ATAGAGAAGCACTTGCTATA+AGG 0.417338 8:+73024212 MsaT045456.1:CDS
ATCCAGCTACGGGTTGATTC+AGG 0.423573 8:-73023902 None:intergenic
AAATGTTCAAGAAGAGTTTG+AGG 0.433930 8:+73025449 MsaT045456.1:CDS
CAGATAAGAAACCCTGTAGT+TGG 0.438439 8:+73024154 MsaT045456.1:CDS
GCTTGTCGCCAACGCCAGCC+TGG 0.445242 8:+73024376 MsaT045456.1:CDS
GAGGAGCTGCTGTCGTAGTC+AGG 0.447051 8:-73023866 None:intergenic
ACATACACCTCTTCTGTACT+AGG 0.447372 8:+73023986 MsaT045456.1:CDS
TCAGGTTCAATATCTATGTA+AGG 0.451180 8:-73023848 None:intergenic
GCAGTGGATTGGTGGACATT+TGG 0.454096 8:+73025585 MsaT045456.1:CDS
CCTTGTCCTAATATAACTTC+TGG 0.456195 8:-73025552 None:intergenic
GTCGCTTAAGGAGGCGGAAG+TGG 0.457883 8:-73024096 None:intergenic
AGCAAGATCAAAATCATTTG+TGG 0.461809 8:+73025509 MsaT045456.1:CDS
TTCCGCCTCCTTAAGCGACT+TGG 0.472352 8:+73024100 MsaT045456.1:CDS
GCAAGATCAAAATCATTTGT+GGG 0.479256 8:+73025510 MsaT045456.1:CDS
TACCTGAATCAACCCGTAGC+TGG 0.485635 8:+73023900 MsaT045456.1:CDS
CTAGTGACAAGAATAAGATT+AGG 0.493204 8:+73025898 MsaT045456.1:CDS
GATAATGAAAAGCGCTTCCC+AGG 0.495751 8:-73024394 None:intergenic
CACTGAGGCAAACCAACTAC+AGG 0.497046 8:-73024166 None:intergenic
AGAAGAGGTGTATGTGGTGG+TGG 0.497776 8:-73023978 None:intergenic
AAGAAACGGAGACGGAGCTT+CGG 0.498607 8:-73023955 None:intergenic
AGCGCTTCCCAGGCTGGCGT+TGG 0.504146 8:-73024384 None:intergenic
TAATTATGAGTTTGAAGAGA+TGG 0.506598 8:+73025725 MsaT045456.1:CDS
CAAGACAGAACTGGTTGCAT+GGG 0.507128 8:-73025369 None:intergenic
TTCCAAGTCGCTTAAGGAGG+CGG 0.508552 8:-73024102 None:intergenic
GGTAAGAAACAAGACAGAAC+TGG 0.508827 8:-73025378 None:intergenic
ATGAAAAGCGCTTCCCAGGC+TGG 0.509245 8:-73024390 None:intergenic
GAAAAGTCAAAGGTTGTTTG+AGG 0.510384 8:-73025683 None:intergenic
TCATAGCCTCCCATGCAACT+TGG 0.510555 8:-73024036 None:intergenic
CTTGTCGCCAACGCCAGCCT+GGG 0.511567 8:+73024377 MsaT045456.1:CDS
TGGATGAGTAACCTCAGCTT+CGG 0.512390 8:+73023920 MsaT045456.1:CDS
GAAGCTACAAAGAGCAGAGA+TGG 0.513111 8:+73024237 MsaT045456.1:CDS
TTCCAACGCTAAGCCTCATA+AGG 0.515710 8:+73024009 MsaT045456.1:CDS
CTCCTTAAGCGACTTGGAAG+CGG 0.516348 8:+73024106 MsaT045456.1:CDS
ACAAGACAGAACTGGTTGCA+TGG 0.516518 8:-73025370 None:intergenic
TCAAAATCAGTATACAAAGT+AGG 0.517482 8:-73024298 None:intergenic
CTAATCTTATTCTTGTCACT+AGG 0.518832 8:-73025897 None:intergenic
ACTAGAGTATCTACACATGA+TGG 0.520536 8:+73025158 MsaT045456.1:CDS
TTACTACTAACACCAATCCT+AGG 0.521295 8:-73025705 None:intergenic
TGAGGTTACTCATCCAGCTA+CGG 0.539825 8:-73023913 None:intergenic
GAGGTTACTCATCCAGCTAC+GGG 0.545283 8:-73023912 None:intergenic
ATGGAAGTGCAGTGGATTGG+TGG 0.547132 8:+73025577 MsaT045456.1:CDS
GTATGTGGTGGTGGAAGAAA+CGG 0.548796 8:-73023969 None:intergenic
TTCAGGTACGGTGATGGAAG+AGG 0.559712 8:-73023885 None:intergenic
CGACTCGACCTTGGTCGAGC+CGG 0.560840 8:-73024066 None:intergenic
GGTCGAGTCCGACTCGACCT+TGG 0.560883 8:-73024075 None:intergenic
GGCAAACCAAGTTGCATGGG+AGG 0.562597 8:+73024030 MsaT045456.1:CDS
CGCTTCCAAGTCGCTTAAGG+AGG 0.566941 8:-73024105 None:intergenic
TGCCTTATGAGGCTTAGCGT+TGG 0.567734 8:-73024011 None:intergenic
TGAGAATAATGAGAAAACAT+TGG 0.570745 8:+73025653 MsaT045456.1:CDS
GGTTGATTCAGGTACGGTGA+TGG 0.577257 8:-73023891 None:intergenic
TAAGGCAAACCAAGTTGCAT+GGG 0.586093 8:+73024027 MsaT045456.1:CDS
ATAAGGCAAACCAAGTTGCA+TGG 0.590080 8:+73024026 MsaT045456.1:CDS
CGGAGACGGAGCTTCGGCGA+CGG 0.591780 8:-73023949 None:intergenic
GTTATATTAGGACAAGGTCA+TGG 0.596123 8:+73025558 MsaT045456.1:CDS
TAGTACAGAAGAGGTGTATG+TGG 0.597102 8:-73023984 None:intergenic
TCTTGTCACTAGGAACCTCA+GGG 0.600591 8:-73025887 None:intergenic
CTAGAGTATCTACACATGAT+GGG 0.602972 8:+73025159 MsaT045456.1:CDS
GTCATGGAAGTGCAGTGGAT+TGG 0.604377 8:+73025574 MsaT045456.1:CDS
AGTCGACTCCGGCTCGACCA+AGG 0.606976 8:+73024058 MsaT045456.1:CDS
ACAAAGAGCAGAGATGGAGA+AGG 0.609995 8:+73024243 MsaT045456.1:CDS
TATGTAAGGTTTGGTGATGG+TGG 0.612123 8:-73023834 None:intergenic
GACGGCGGCTTCCGAAGCTG+AGG 0.616563 8:-73023931 None:intergenic
AGACGGAGCTTCGGCGACGG+CGG 0.619092 8:-73023946 None:intergenic
CGGCTCGACCAAGGTCGAGT+CGG 0.626857 8:+73024067 MsaT045456.1:CDS
AAGACAGAACTGGTTGCATG+GGG 0.627836 8:-73025368 None:intergenic
ACAAGGTCATGGAAGTGCAG+TGG 0.630518 8:+73025569 MsaT045456.1:CDS
AGGTTTGGTGATGGTGGCCA+TGG 0.631006 8:-73023828 None:intergenic
CAAGATCAAAATCATTTGTG+GGG 0.639484 8:+73025511 MsaT045456.1:CDS
CAAGCATACAAATCACCACC+AGG 0.639865 8:-73024358 None:intergenic
CCAGAAGTTATATTAGGACA+AGG 0.641637 8:+73025552 MsaT045456.1:CDS
CCAATCCTAGGAAAAGTCAA+AGG 0.642603 8:-73025693 None:intergenic
GCTACGGGTTGATTCAGGTA+CGG 0.644920 8:-73023897 None:intergenic
GTTGGAACCTAGTACAGAAG+AGG 0.654189 8:-73023993 None:intergenic
ATCTATGTAAGGTTTGGTGA+TGG 0.663222 8:-73023837 None:intergenic
GGGAGGCTATGAGTCGACTC+CGG 0.665447 8:+73024047 MsaT045456.1:CDS
ACTGAGGCAAACCAACTACA+GGG 0.691651 8:-73024165 None:intergenic
GGTGGTGGAAGAAACGGAGA+CGG 0.694142 8:-73023963 None:intergenic
TTGTCACTAGGAACCTCAGG+GGG 0.705548 8:-73025885 None:intergenic
CTTGTCACTAGGAACCTCAG+GGG 0.731271 8:-73025886 None:intergenic
TACAGAAGAGGTGTATGTGG+TGG 0.741171 8:-73023981 None:intergenic
TTCATAGCATAGAAACACTG+AGG 0.749139 8:-73024181 None:intergenic
AGACAGAACTGGTTGCATGG+GGG 0.753672 8:-73025367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 73023830 73026001 73023830 ID=MsaG045456
Chr8 mRNA 73023830 73026001 73023830 ID=MsaT045456.1;Parent=MsaG045456
Chr8 exon 73023830 73024425 73023830 ID=MsaT045456.1.exon1;Parent=MsaT045456.1
Chr8 CDS 73023830 73024425 73023830 ID=cds.MsaT045456.1;Parent=MsaT045456.1
Chr8 exon 73025131 73026001 73025131 ID=MsaT045456.1.exon2;Parent=MsaT045456.1
Chr8 CDS 73025131 73026001 73025131 ID=cds.MsaT045456.1;Parent=MsaT045456.1
Gene Sequence

>MsaT045456.1

ATGGCCACCATCACCAAACCTTACATAGATATTGAACCTGACTACGACAGCAGCTCCTCTTCCATCACCGTACCTGAATCAACCCGTAGCTGGATGAGTAACCTCAGCTTCGGAAGCCGCCGTCGCCGAAGCTCCGTCTCCGTTTCTTCCACCACCACATACACCTCTTCTGTACTAGGTTCCAACGCTAAGCCTCATAAGGCAAACCAAGTTGCATGGGAGGCTATGAGTCGACTCCGGCTCGACCAAGGTCGAGTCGGACTCGACCACTTCCGCCTCCTTAAGCGACTTGGAAGCGGCGATATAGGGAATGTTTATCTTTGTCAGATAAGAAACCCTGTAGTTGGTTTGCCTCAGTGTTTCTATGCTATGAAAGTTGTTGATAGAGAAGCACTTGCTATAAGGAAGAAGCTACAAAGAGCAGAGATGGAGAAGGAGATTTTGGGGATGCTTGATCATCCTTTTTTGCCTACTTTGTATACTGATTTTGATGCTTCTCATTACTCTTGTTTGGTTATGGAGTTTTGTCCTGGTGGTGATTTGTATGCTTGTCGCCAACGCCAGCCTGGGAAGCGCTTTTCATTATCATCCTCCAAGTTTTATGCAGCTGAAACACTATTGGCACTAGAGTATCTACACATGATGGGAATAGTATACAGAGATTTAAAGCCAGAGAATGTTTTAGTAAGAGAAGATGGACACATAATGCTTTCAGATTTTGATCTTTCACTCAAATGTGACGTTGTTCCAAAGCTCTTAAGAAGCAAAACAAGATTAGAACGAAGTATCAAAACAACTACTACAATGAGATGTTCAACACCTTCTTGCATTTCCCCCATGCAACCAGTTCTGTCTTGTTTCTTACCATCATCAACAAAGAAAAAGAAAACTAAACTTGAAACTGTTATTAGAGAAAATGTTCAAGAAGAGTTTGAGGTTGATCTTGATCCTGATTTTGTAGCTGAACCAATTGAAGCAAGATCAAAATCATTTGTGGGGACACATGAATATTTAGCACCAGAAGTTATATTAGGACAAGGTCATGGAAGTGCAGTGGATTGGTGGACATTTGGTGTTTTTTTGTACGAAATGTTATATGGAAGAACACCATTTAAAGGTGAGAATAATGAGAAAACATTGGTTAATATCCTCAAACAACCTTTGACTTTTCCTAGGATTGGTGTTAGTAGTAATTATGAGTTTGAAGAGATGGTGAAAGTTCAAGATCTTATAAGCAAATTGTTGGTGAAGAATCCAAATAAGAGAATTGGAAGTTGTTTGGGTTCTGTTGAGATTAAAAGACATGAGTTTTTTAAGGGTGTTAATTGGGCTTTGATTAGATCAGTTAGACCCCCTGAGGTTCCTAGTGACAAGAATAAGATTAGGAATAGAGTTTTGGTGCCTAAATTAAGCAAGAAAGATAGAGATCAACCATTTCAGCTTAAACATCAATTTGATTACTTCTAA

Protein sequence

>MsaT045456.1

MATITKPYIDIEPDYDSSSSSITVPESTRSWMSNLSFGSRRRRSSVSVSSTTTYTSSVLGSNAKPHKANQVAWEAMSRLRLDQGRVGLDHFRLLKRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILGMLDHPFLPTLYTDFDASHYSCLVMEFCPGGDLYACRQRQPGKRFSLSSSKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRLERSIKTTTTMRCSTPSCISPMQPVLSCFLPSSTKKKKTKLETVIRENVQEEFEVDLDPDFVAEPIEARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLTFPRIGVSSNYEFEEMVKVQDLISKLLVKNPNKRIGSCLGSVEIKRHEFFKGVNWALIRSVRPPEVPSDKNKIRNRVLVPKLSKKDRDQPFQLKHQFDYF*