AlfalfaGEDB | MsaG045462

M. sativa ssp. caerulea / MsaG045462

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00642.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045462	XP_003609272.1	91.781	146	12	0	1	146	1	146	1.39e-93	280

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045462	sp\|Q9LT81\|C3H39_ARATH	46.667	120	35	1	54	144	95	214	3.68e-31	118

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045462	tr\|G7JVB3\|G7JVB3_MEDTR	91.781	146	12	0	1	146	1	146	6.66e-94	280

TFs/TRs:

Gene ID	Type	Classification
MsaG045462	TF	C3H

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG019764	MsaG045462	0.812206	8.184938e-51	1.475273e-48
MsaG027152	MsaG045462	0.840505	1.545419e-57	6.129208e-55

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045462	MtrunA17_Chr4g0063371	91.781	146	12	0	1	146	1	146	1.28e-97	280
MsaG045462	MtrunA17_Chr4g0063391	74.675	154	21	2	1	144	1	146	2.96e-76	226
MsaG045462	MtrunA17_Chr4g0063401	55.307	179	41	4	1	144	1	175	4.62e-56	176
MsaG045462	MtrunA17_Chr4g0063361	51.977	177	55	3	1	147	1	177	1.12e-52	167
MsaG045462	MtrunA17_Chr3g0098251	54.867	113	38	2	41	145	17	124	1.89e-34	119
MsaG045462	MtrunA17_Chr8g0366501	33.333	171	63	4	16	143	36	198	5.49e-20	84.7
MsaG045462	MtrunA17_Chr8g0360671	56.522	69	22	1	85	145	41	109	1.39e-19	80.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045462	AT3G19360.1	46.667	120	35	1	54	144	95	214	3.74e-32	118
MsaG045462	AT3G19360.2	46.667	120	35	1	54	144	95	214	3.74e-32	118
MsaG045462	AT1G32360.1	34.167	120	48	2	55	143	83	202	1.51e-17	78.2

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCAACTAGCTTCTGCGAATT+TGG	0.155359	8:-73073438	None:intergenic
CATTGATATGCCCTCCTTCT+AGG	0.200507	8:+73073277	MsaT045462.1:CDS
ATGATGATCCTGCACAGTTT+TGG	0.217299	8:+73073562	MsaT045462.1:CDS
CTTCACTGTTTGATTGAGGC+AGG	0.344430	8:-73073305	None:intergenic
ATTTGTACTAAGTTCAGATT+TGG	0.359410	8:+73073351	MsaT045462.1:CDS
TGAACAACAATGACTTCAAA+AGG	0.386314	8:+73073208	MsaT045462.1:CDS
TTGCGGCGGTGACATCTTAG+AGG	0.443186	8:-73073175	None:intergenic
AGATTTGGTGCTTGTAGAAA+CGG	0.444340	8:+73073366	MsaT045462.1:CDS
TTAGAGGTTGGAATATCATC+TGG	0.452783	8:-73073159	None:intergenic
TGAGGCAGGGTCATCCTAGA+AGG	0.462386	8:-73073291	None:intergenic
ACAAATTGCAACTTTGCTCA+TGG	0.469357	8:+73073390	MsaT045462.1:CDS
TGTGCAAGAAGTATTGCAAT+GGG	0.488339	8:+73073502	MsaT045462.1:CDS
CAAATTGCAACTTTGCTCAT+GGG	0.490368	8:+73073391	MsaT045462.1:CDS
CTCATGGGGCTGAAGAGATA+AGG	0.491985	8:+73073406	MsaT045462.1:CDS
AGCTTCTGCGAATTTGGAGG+TGG	0.504943	8:-73073432	None:intergenic
CCAAATTCGCAGAAGCTAGT+TGG	0.513477	8:+73073438	MsaT045462.1:CDS
ACTAGCTTCTGCGAATTTGG+AGG	0.524749	8:-73073435	None:intergenic
GAATTTACACTTATCTCCAT+AGG	0.538699	8:-73073535	None:intergenic
AGGAGGGCATATCAATGCAT+TGG	0.539478	8:-73073247	None:intergenic
TTGTTCAATGAAGCGAATTG+CGG	0.546451	8:-73073192	None:intergenic
TTCACTGTTTGATTGAGGCA+GGG	0.547475	8:-73073304	None:intergenic
GAACAACAATGACTTCAAAA+GGG	0.550138	8:+73073209	MsaT045462.1:CDS
AAATTGCAACTTTGCTCATG+GGG	0.550865	8:+73073392	MsaT045462.1:CDS
GGCGGTGACATCTTAGAGGT+TGG	0.560713	8:-73073171	None:intergenic
AACAATGACTTCAAAAGGGA+AGG	0.561307	8:+73073213	MsaT045462.1:CDS
AATTTACACTTATCTCCATA+GGG	0.569227	8:-73073534	None:intergenic
CTGTGCAAGAAGTATTGCAA+TGG	0.572239	8:+73073501	MsaT045462.1:CDS
TTGCCTTCACTGTTTGATTG+AGG	0.577263	8:-73073309	None:intergenic
GGGCATATCAATGCATCAGA+AGG	0.578406	8:-73073267	None:intergenic
CATATCAATGCATCAGAAGG+AGG	0.594047	8:-73073264	None:intergenic
ACTGTGCAGGATCATCATGA+AGG	0.596122	8:-73073557	None:intergenic
TTCAATGAAGCGAATTGCGG+CGG	0.605113	8:-73073189	None:intergenic
GGCAGGGTCATCCTAGAAGG+AGG	0.615017	8:-73073288	None:intergenic
AATGGGGAGGAATGTCCCTA+TGG	0.622726	8:+73073519	MsaT045462.1:CDS
AATATCATCTGGAAAAGCCA+TGG	0.624162	8:-73073148	None:intergenic
CTGCCTCAATCAAACAGTGA+AGG	0.629009	8:+73073306	MsaT045462.1:CDS
ATATCAATGCATCAGAAGGA+GGG	0.639941	8:-73073263	None:intergenic
CAAGAAGTATTGCAATGGGG+AGG	0.655957	8:+73073506	MsaT045462.1:CDS
GCAGGGTCATCCTAGAAGGA+GGG	0.663053	8:-73073287	None:intergenic
GTGCAAGAAGTATTGCAATG+GGG	0.763140	8:+73073503	MsaT045462.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	73073150	73073605	73073150	ID=MsaG045462
Chr8	mRNA	73073150	73073605	73073150	ID=MsaT045462.1;Parent=MsaG045462
Chr8	exon	73073150	73073605	73073150	ID=MsaT045462.1.exon1;Parent=MsaT045462.1
Chr8	CDS	73073150	73073605	73073150	ID=cds.MsaT045462.1;Parent=MsaT045462.1

Gene Sequence

>MsaT045462.1

ATGGCTTTTCCAGATGATATTCCAACCTCTAAGATGTCACCGCCGCAATTCGCTTCATTGAACAACAATGACTTCAAAAGGGAAGGAACTTCTCATTCCAATGCATTGATATGCCCTCCTTCTGATGCATTGATATGCCCTCCTTCTAGGATGACCCTGCCTCAATCAAACAGTGAAGGCAACATTTTCTATAAAACACGAATTTGTACTAAGTTCAGATTTGGTGCTTGTAGAAACGGAACAAATTGCAACTTTGCTCATGGGGCTGAAGAGATAAGGCAACCACCTCCAAATTCGCAGAAGCTAGTTGGTCCGTGCAACGAAGATAAAAAAATCATAAACAAGATGAAACTGTGCAAGAAGTATTGCAATGGGGAGGAATGTCCCTATGGAGATAAGTGTAAATTCCTTCATGATGATCCTGCACAGTTTTGGGGGCACTTATCGGAAGACTAA

Protein sequence

>MsaT045462.1

MAFPDDIPTSKMSPPQFASLNNNDFKREGTSHSNALICPPSDALICPPSRMTLPQSNSEGNIFYKTRICTKFRFGACRNGTNCNFAHGAEEIRQPPPNSQKLVGPCNEDKKIINKMKLCKKYCNGEECPYGDKCKFLHDDPAQFWGHLSED*