AlfalfaGEDB | MsaG045465

M. sativa ssp. caerulea / MsaG045465

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
PFAM: PF18345.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045465	RHN63911.1	84.043	94	15	0	1	94	118	211	2.35e-48	163

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045465	sp\|Q9LT81\|C3H39_ARATH	39.640	111	46	2	1	90	186	296	6.61e-18	79.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045465	tr\|A0A396IGG1\|A0A396IGG1_MEDTR	84.043	94	15	0	1	94	118	211	1.12e-48	163

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TFs/TRs:

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Gene ID	Type	Classification
MsaG045465	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG045465	0.822906	3.252850e-53	7.729720e-51
MsaG000113	MsaG045465	0.810894	1.573757e-50	2.746727e-48
MsaG000151	MsaG045465	0.823588	2.258421e-53	5.466899e-51
MsaG000153	MsaG045465	0.805622	2.066332e-49	3.178358e-47
MsaG000188	MsaG045465	0.823857	1.954023e-53	4.764635e-51
MsaG000213	MsaG045465	0.809998	2.450889e-50	4.185262e-48
MsaG000235	MsaG045465	0.805317	2.392342e-49	3.653783e-47
MsaG000271	MsaG045465	0.802178	1.065580e-48	1.513524e-46
MsaG000344	MsaG045465	0.800296	2.575497e-48	3.505480e-46
MsaG000400	MsaG045465	0.814616	2.432148e-51	4.656129e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045465	MtrunA17_Chr4g0063391	84.043	94	15	0	1	94	118	211	2.16e-52	163
MsaG045465	MtrunA17_Chr4g0063401	59.406	101	29	2	1	90	147	246	8.61e-32	111
MsaG045465	MtrunA17_Chr4g0063371	54.945	91	11	1	1	91	116	176	2.37e-25	94.4
MsaG045465	MtrunA17_Chr4g0063361	51.579	95	41	1	1	90	146	240	1.11e-23	90.5
MsaG045465	MtrunA17_Chr3g0098251	49.474	95	30	3	1	90	95	176	2.17e-18	75.9
MsaG045465	MtrunA17_Chr8g0360671	53.947	76	24	2	1	69	80	151	8.51e-17	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045465	AT3G19360.1	39.640	111	46	2	1	90	186	296	6.72e-19	79.7
MsaG045465	AT3G19360.2	39.640	111	46	2	1	90	186	296	6.72e-19	79.7

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Find 24 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGACAGTTCATTCCAA+AGG	0.613697	8:-73088258	None:intergenic
AATCATTGGAACTAATAATT+TGG	0.190712	8:+73088148	MsaT045465.1:CDS
AATTTACAGTTATCTCTATA+TGG	0.334708	8:-73088062	None:intergenic
ACTGTGCAGGATCTTCATGA+AGG	0.599205	8:-73088085	None:intergenic
AGACTAAGCTGTGTCGCAAT+TGG	0.427484	8:+73088216	MsaT045465.1:CDS
AGCAAGCAAGGGGCACTTAT+CGG	0.435970	8:+73088192	MsaT045465.1:CDS
ATGAAGATCCTGCACAGTTT+AGG	0.265678	8:+73088090	MsaT045465.1:CDS
ATTAGTTCCAATGATTATTG+CGG	0.561274	8:-73088141	None:intergenic
CAATAAGTATTGCAATGGGG+AGG	0.655957	8:+73088034	MsaT045465.1:CDS
CATACCGGATATTGTTCCTT+TGG	0.350886	8:+73088242	MsaT045465.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	73088023	73088407	73088023	ID=MsaG045465
Chr8	mRNA	73088023	73088407	73088023	ID=MsaT045465.1;Parent=MsaG045465
Chr8	exon	73088023	73088296	73088023	ID=MsaT045465.1.exon1;Parent=MsaT045465.1
Chr8	CDS	73088023	73088296	73088023	ID=cds.MsaT045465.1;Parent=MsaT045465.1
Chr8	exon	73088397	73088407	73088397	ID=MsaT045465.1.exon2;Parent=MsaT045465.1
Chr8	CDS	73088397	73088407	73088397	ID=cds.MsaT045465.1;Parent=MsaT045465.1

Gene Sequence	>MsaT045465.1 ATGAAACTGTGCAATAAGTATTGCAATGGGGAGGAATATCCATATAGAGATAACTGTAAATTCCTTCATGAAGATCCTGCACAGTTTAGGGATGATTCCTTGAAATCAAGAGAGTACTCCGCAATAATCATTGGAACTAATAATTTGGAAGACAGTAGGGCTGTGAACAAGCAAGCAAGGGGCACTTATCGGAAGACTAAGCTGTGTCGCAATTGGAAGCATACCGGATATTGTTCCTTTGGAATGAACTGTCTCTTTGCTCATGATGAAGAACATGATGTGTAG
Protein sequence	>MsaT045465.1 MKLCNKYCNGEEYPYRDNCKFLHEDPAQFRDDSLKSREYSAIIIGTNNLEDSRAVNKQARGTYRKTKLCRNWKHTGYCSFGMNCLFAHDEEHDV*