AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG045605


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045605 MtrunA17_Chr4g0065141 96.615 384 13 0 1 384 1 384 0.0 769
MsaG045605 MtrunA17_Chr3g0138281 58.689 305 123 2 79 383 76 377 9.12e-130 377
MsaG045605 MtrunA17_Chr5g0407161 52.145 303 139 3 80 382 80 376 3.10e-104 312
MsaG045605 MtrunA17_Chr1g0194191 48.308 325 140 6 77 383 71 385 1.03e-98 298
MsaG045605 MtrunA17_Chr3g0144111 50.699 286 114 4 98 383 1 259 8.64e-94 281
MsaG045605 MtrunA17_Chr2g0293811 47.321 336 148 6 62 383 46 366 4.13e-89 273
MsaG045605 MtrunA17_Chr5g0430481 36.330 267 134 7 93 348 131 372 4.02e-45 159
MsaG045605 MtrunA17_Chr1g0171571 32.277 347 177 10 16 348 340 642 1.25e-42 157
MsaG045605 MtrunA17_Chr1g0150451 35.206 267 148 5 87 350 79 323 4.01e-42 150
MsaG045605 MtrunA17_Chr3g0105371 33.582 268 148 6 93 352 95 340 3.74e-41 148
MsaG045605 MtrunA17_Chr4g0068971 48.765 162 74 3 226 383 110 266 3.91e-41 145
MsaG045605 MtrunA17_Chr3g0136711 36.402 239 135 4 115 350 56 280 7.67e-41 146
MsaG045605 MtrunA17_Chr1g0212961 36.100 241 133 5 117 354 119 341 4.82e-40 145
MsaG045605 MtrunA17_Chr3g0105351 32.090 268 152 6 93 352 71 316 7.43e-40 144
MsaG045605 MtrunA17_Chr4g0001761 31.661 319 158 5 84 352 22 330 7.68e-40 145
MsaG045605 MtrunA17_Chr6g0483411 30.357 336 186 12 39 351 9 319 6.70e-37 136
MsaG045605 MtrunA17_Chr3g0126511 33.051 236 141 4 121 353 122 343 1.98e-35 133
MsaG045605 MtrunA17_Chr3g0115851 32.979 282 153 11 79 351 28 282 1.08e-34 129
MsaG045605 MtrunA17_Chr4g0050381 33.077 260 143 9 98 351 43 277 1.77e-34 128
MsaG045605 MtrunA17_Chr2g0279151 33.333 261 141 9 98 351 47 281 1.79e-33 125
MsaG045605 MtrunA17_Chr2g0317021 32.584 267 149 9 92 351 91 333 2.24e-33 127
MsaG045605 MtrunA17_Chr1g0150071 35.602 191 114 2 184 369 158 344 1.77e-32 125
MsaG045605 MtrunA17_Chr5g0426141 32.567 261 143 8 98 351 48 282 2.18e-32 123
MsaG045605 MtrunA17_Chr3g0127091 28.808 302 167 8 82 347 57 346 8.52e-32 124
MsaG045605 MtrunA17_Chr8g0360351 32.780 241 139 6 117 351 59 282 1.81e-31 120
MsaG045605 MtrunA17_Chr3g0135961 29.618 314 159 9 93 353 238 542 1.06e-29 120
MsaG045605 MtrunA17_Chr2g0299981 29.363 361 181 11 55 353 190 538 2.70e-29 119
MsaG045605 MtrunA17_Chr1g0150781 29.885 261 138 6 124 348 290 541 2.81e-29 119
MsaG045605 MtrunA17_Chr4g0070871 29.808 312 159 12 87 352 208 505 9.07e-29 117
MsaG045605 MtrunA17_Chr3g0136811 34.104 173 109 1 184 351 158 330 1.20e-28 114
MsaG045605 MtrunA17_Chr1g0158781 31.579 285 157 7 84 348 111 377 1.42e-28 115
MsaG045605 MtrunA17_Chr4g0051661 30.738 244 139 7 113 350 178 397 2.75e-28 114
MsaG045605 MtrunA17_Chr5g0396731 32.016 253 140 7 83 320 70 305 8.41e-28 112
MsaG045605 MtrunA17_Chr3g0112291 28.788 264 144 7 120 348 119 373 1.24e-25 106
MsaG045605 MtrunA17_Chr8g0389921 28.794 257 143 6 122 353 196 437 1.93e-22 98.6
MsaG045605 MtrunA17_Chr5g0435721 30.093 216 126 4 124 323 223 429 8.92e-22 96.7
MsaG045605 MtrunA17_Chr4g0066371 31.250 272 131 13 119 348 81 338 9.64e-22 95.9
MsaG045605 MtrunA17_Chr2g0286951 27.839 273 139 9 119 348 82 339 3.74e-21 94.4
MsaG045605 MtrunA17_Chr7g0263281 28.622 283 146 9 123 353 70 348 3.21e-20 91.3
MsaG045605 MtrunA17_Chr6g0486661 27.666 347 158 16 112 383 116 444 4.56e-20 92.4
MsaG045605 MtrunA17_Chr1g0153671 30.916 262 134 10 123 358 64 304 1.01e-19 90.1
MsaG045605 MtrunA17_Chr2g0295401 29.085 306 156 13 93 354 69 357 4.42e-19 87.8
MsaG045605 MtrunA17_Chr1g0213351 26.531 294 142 11 123 355 79 359 5.98e-19 87.4
MsaG045605 MtrunA17_Chr8g0371321 26.644 289 142 11 123 352 78 355 3.18e-18 85.5
MsaG045605 MtrunA17_Chr7g0256771 29.796 245 124 11 124 328 70 306 3.48e-17 81.6
MsaG045605 MtrunA17_Chr3g0089721 29.661 236 127 10 115 315 60 291 3.88e-17 82.0
MsaG045605 MtrunA17_Chr4g0067711 26.596 282 152 10 118 354 85 356 5.20e-17 81.6
MsaG045605 MtrunA17_Chr3g0089711 29.237 236 128 10 115 315 60 291 1.01e-16 80.9
MsaG045605 MtrunA17_Chr3g0133801 28.309 272 146 11 116 360 56 305 1.78e-16 80.5
MsaG045605 MtrunA17_Chr7g0250061 25.796 314 153 13 123 374 75 370 2.49e-16 79.7
MsaG045605 MtrunA17_Chr1g0211251 26.573 286 146 11 123 352 80 357 3.15e-16 79.7
MsaG045605 MtrunA17_Chr7g0256751 26.502 283 140 12 106 341 52 313 4.70e-16 79.3
MsaG045605 MtrunA17_Chr1g0181901 30.396 227 114 8 123 311 75 295 5.74e-16 79.0
MsaG045605 MtrunA17_Chr7g0272061 27.347 245 119 8 118 312 85 320 6.31e-16 78.6
MsaG045605 MtrunA17_Chr1g0192421 26.882 279 151 13 118 352 83 352 9.86e-16 77.8
MsaG045605 MtrunA17_Chr1g0209451 27.636 275 153 11 119 367 63 317 5.37e-15 76.3
MsaG045605 MtrunA17_Chr4g0004971 30.088 226 104 8 124 304 78 294 7.53e-15 75.1
MsaG045605 MtrunA17_Chr7g0243571 28.287 251 117 8 115 312 83 323 7.99e-15 75.5
MsaG045605 MtrunA17_Chr7g0271971 29.921 254 133 10 119 348 63 295 9.24e-15 75.5
MsaG045605 MtrunA17_Chr2g0294291 27.059 255 138 8 123 337 74 320 1.21e-14 74.7
MsaG045605 MtrunA17_Chr1g0175381 24.850 334 157 14 99 353 37 355 1.27e-14 74.7
MsaG045605 MtrunA17_Chr4g0063051 30.342 234 133 10 124 341 61 280 4.64e-14 72.8
MsaG045605 MtrunA17_Chr1g0192471 28.854 253 137 9 119 348 63 295 7.83e-14 72.4
MsaG045605 MtrunA17_Chr5g0394181 25.200 250 162 9 120 352 358 599 8.70e-13 69.7
MsaG045605 MtrunA17_Chr4g0063111 26.493 268 145 10 114 344 64 316 2.17e-12 68.6
MsaG045605 MtrunA17_Chr7g0249421 28.516 256 106 10 124 311 96 342 5.50e-12 67.0
MsaG045605 MtrunA17_Chr7g0225501 29.537 281 152 16 121 378 83 340 5.59e-12 67.0
MsaG045605 MtrunA17_Chr7g0238501 24.164 269 159 10 116 341 254 520 3.09e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045605 AT2G25620.1 55.814 344 133 5 44 383 60 388 2.43e-130 379
MsaG045605 AT2G25620.2 55.814 344 133 5 44 383 60 388 2.43e-130 379
MsaG045605 AT2G33700.1 54.934 304 132 2 80 383 79 377 5.04e-116 343
MsaG045605 AT3G51470.2 50.658 304 139 4 79 382 22 314 3.02e-103 308
MsaG045605 AT3G51470.1 50.658 304 139 4 79 382 66 358 7.51e-103 308
MsaG045605 AT3G62260.1 47.256 328 148 6 72 383 64 382 3.15e-90 277
MsaG045605 AT3G62260.2 47.256 328 148 6 72 383 65 383 3.32e-90 277
MsaG045605 AT1G48040.1 43.296 358 183 7 36 382 32 380 8.96e-87 268
MsaG045605 AT3G62260.3 48.344 302 131 6 98 383 1 293 1.83e-82 254
MsaG045605 AT3G17250.1 40.179 336 180 7 61 383 94 421 5.27e-78 247
MsaG045605 AT5G10740.1 37.778 270 137 6 87 350 35 279 8.16e-46 161
MsaG045605 AT5G10740.2 37.778 270 137 6 87 350 35 279 8.16e-46 161
MsaG045605 AT5G24940.1 37.037 270 139 6 87 350 35 279 9.16e-45 160
MsaG045605 AT4G31750.2 36.777 242 136 4 115 353 55 282 7.57e-41 146
MsaG045605 AT4G31750.1 36.777 242 136 4 115 353 55 282 7.87e-41 146
MsaG045605 AT4G31750.3 36.777 242 136 4 115 353 55 282 7.87e-41 146
MsaG045605 AT1G07160.1 34.962 266 142 6 93 348 130 374 8.98e-41 148
MsaG045605 AT1G67820.2 38.222 225 110 5 93 310 92 294 5.43e-39 144
MsaG045605 AT1G67820.1 38.222 225 110 5 93 310 128 330 8.95e-39 144
MsaG045605 AT2G30020.1 34.717 265 143 6 93 348 147 390 1.78e-38 142
MsaG045605 AT1G78200.5 33.077 260 146 8 98 351 1 238 5.59e-38 137
MsaG045605 AT1G78200.4 33.077 260 146 8 98 351 1 238 5.59e-38 137
MsaG045605 AT1G18030.1 27.945 365 220 9 10 351 5 349 1.62e-37 139
MsaG045605 AT1G43900.1 34.836 244 129 7 117 351 147 369 2.95e-37 139
MsaG045605 AT1G78200.1 33.077 260 146 8 98 351 46 283 4.24e-37 136
MsaG045605 AT1G78200.3 33.077 260 146 8 98 351 46 283 4.24e-37 136
MsaG045605 AT1G78200.2 33.077 260 146 8 98 351 46 283 4.24e-37 136
MsaG045605 AT5G53140.1 32.245 245 145 5 114 351 118 348 1.17e-36 138
MsaG045605 AT5G53140.2 32.245 245 145 5 114 351 118 348 1.17e-36 138
MsaG045605 AT2G40180.1 33.091 275 152 7 93 355 136 390 4.32e-36 136
MsaG045605 AT1G22280.1 32.567 261 143 9 98 351 47 281 1.50e-35 132
MsaG045605 AT2G40860.4 32.746 284 152 9 80 348 289 548 5.24e-35 135
MsaG045605 AT2G40860.1 32.746 284 152 9 80 348 387 646 6.08e-35 136
MsaG045605 AT2G20630.1 32.210 267 143 10 94 351 42 279 2.80e-34 128
MsaG045605 AT2G20630.2 31.955 266 143 10 94 350 42 278 4.34e-34 128
MsaG045605 AT1G22280.3 31.835 267 143 10 98 351 47 287 3.27e-33 125
MsaG045605 AT4G28400.3 33.891 239 129 7 122 351 43 261 3.70e-33 125
MsaG045605 AT4G28400.1 33.891 239 129 7 122 351 65 283 8.31e-33 124
MsaG045605 AT1G34750.2 32.946 258 140 10 98 348 48 279 1.45e-32 124
MsaG045605 AT1G34750.1 32.946 258 140 10 98 348 48 279 1.45e-32 124
MsaG045605 AT1G34750.3 32.946 258 140 10 98 348 48 279 1.45e-32 124
MsaG045605 AT2G25070.1 36.158 177 108 1 184 355 158 334 1.88e-32 125
MsaG045605 AT2G25070.2 36.158 177 108 1 184 355 158 334 1.88e-32 125
MsaG045605 AT4G27800.1 26.765 340 202 7 68 372 43 370 2.71e-31 122
MsaG045605 AT2G34740.1 31.535 241 140 8 117 350 112 334 1.20e-30 120
MsaG045605 AT4G31860.1 34.463 177 111 1 184 355 158 334 1.21e-30 120
MsaG045605 AT3G15260.2 33.195 241 138 6 117 351 66 289 2.43e-30 118
MsaG045605 AT3G15260.1 33.195 241 138 6 117 351 66 289 2.43e-30 118
MsaG045605 AT2G40860.2 31.868 273 147 9 80 337 387 635 3.37e-30 122
MsaG045605 AT4G26080.1 29.114 316 169 8 75 348 118 420 5.19e-29 117
MsaG045605 AT1G18030.2 27.532 316 187 8 10 303 5 300 2.20e-28 113
MsaG045605 AT5G51760.2 29.487 312 158 7 87 348 80 379 4.48e-28 114
MsaG045605 AT5G51760.1 32.143 252 131 5 98 321 121 360 6.97e-28 114
MsaG045605 AT4G27800.2 27.517 298 169 7 68 330 43 328 1.28e-27 111
MsaG045605 AT4G27800.3 27.797 295 166 7 68 327 43 325 1.46e-27 111
MsaG045605 AT4G31860.2 29.167 264 131 4 84 301 22 275 2.14e-27 109
MsaG045605 AT1G17550.1 27.798 277 144 6 124 353 237 504 3.34e-27 113
MsaG045605 AT1G17550.2 27.798 277 144 6 124 353 237 504 3.34e-27 113
MsaG045605 AT2G29380.1 31.518 257 134 9 124 348 112 358 1.66e-26 109
MsaG045605 AT1G07430.1 32.692 208 114 5 124 314 157 355 1.88e-26 110
MsaG045605 AT4G31860.3 40.299 134 80 0 184 317 158 291 2.11e-26 107
MsaG045605 AT5G57050.2 28.165 316 190 9 49 338 33 337 2.51e-26 108
MsaG045605 AT5G57050.1 28.165 316 190 9 49 338 73 377 4.03e-26 108
MsaG045605 AT1G72770.4 27.174 276 146 6 124 353 238 504 4.53e-26 109
MsaG045605 AT1G72770.1 27.174 276 146 6 124 353 238 504 4.53e-26 109
MsaG045605 AT1G72770.3 27.174 276 146 6 124 353 238 504 4.53e-26 109
MsaG045605 AT4G28400.2 35.079 191 99 6 122 303 65 239 3.68e-25 103
MsaG045605 AT2G34740.3 33.505 194 108 7 117 303 108 287 1.67e-24 102
MsaG045605 AT2G34740.2 33.505 194 108 7 117 303 126 305 2.40e-24 102
MsaG045605 AT1G34750.4 33.333 213 113 9 98 303 48 238 3.47e-24 100
MsaG045605 AT3G11410.1 30.556 216 116 5 124 314 137 343 1.29e-23 101
MsaG045605 AT5G59220.1 32.195 205 116 4 124 314 148 343 1.82e-23 101
MsaG045605 AT2G20050.1 29.054 296 138 13 124 361 143 424 5.93e-23 101
MsaG045605 AT2G20050.2 29.054 296 138 13 124 361 143 424 6.26e-23 101
MsaG045605 AT2G40860.3 32.174 230 120 8 80 294 387 595 1.87e-22 99.8
MsaG045605 AT4G08260.1 31.579 228 115 7 123 348 18 206 8.88e-22 92.8
MsaG045605 AT5G02760.1 28.975 283 145 10 123 354 71 348 1.15e-21 95.9
MsaG045605 AT3G16800.2 30.147 272 143 11 118 351 87 349 3.82e-20 91.3
MsaG045605 AT3G16800.1 30.147 272 143 11 118 351 87 349 3.82e-20 91.3
MsaG045605 AT3G16800.3 30.147 272 143 11 118 351 87 349 3.82e-20 91.3
MsaG045605 AT1G47380.1 28.819 288 153 12 121 384 61 320 4.30e-18 85.9
MsaG045605 AT1G09160.2 30.709 254 131 10 119 348 63 295 7.65e-18 85.1
MsaG045605 AT1G09160.1 30.709 254 131 10 119 348 63 295 7.65e-18 85.1
MsaG045605 AT3G27140.1 28.099 242 108 6 123 362 18 195 8.86e-18 82.4
MsaG045605 AT3G51370.1 26.645 304 144 13 123 360 78 368 1.54e-17 84.0
MsaG045605 AT3G51370.3 26.645 304 144 13 123 360 78 368 1.54e-17 84.0
MsaG045605 AT4G32950.1 26.207 290 171 10 93 356 50 322 2.28e-17 82.8
MsaG045605 AT3G16800.4 29.658 263 138 11 127 351 1 254 4.14e-17 80.9
MsaG045605 AT3G16800.6 29.658 263 138 11 127 351 1 254 4.14e-17 80.9
MsaG045605 AT5G57050.3 28.571 238 142 8 49 260 73 308 6.01e-17 81.3
MsaG045605 AT4G38520.2 26.573 286 146 9 123 352 80 357 8.99e-17 81.6
MsaG045605 AT4G38520.1 26.573 286 146 9 123 352 80 357 8.99e-17 81.6
MsaG045605 AT3G12620.2 26.712 292 140 11 123 353 82 360 1.26e-16 81.3
MsaG045605 AT3G12620.1 26.712 292 140 11 123 353 82 360 1.26e-16 81.3
MsaG045605 AT1G22280.2 31.544 149 87 5 98 244 47 182 2.55e-16 77.4
MsaG045605 AT3G05640.2 26.374 273 153 10 118 351 87 350 3.48e-16 79.7
MsaG045605 AT3G05640.1 26.374 273 153 10 118 351 87 350 3.48e-16 79.7
MsaG045605 AT3G05640.3 26.374 273 153 10 118 351 87 350 3.48e-16 79.7
MsaG045605 AT5G66080.1 27.668 253 138 11 123 337 81 326 1.14e-15 78.2
MsaG045605 AT3G55050.1 27.273 286 144 11 123 352 83 360 1.72e-15 77.8
MsaG045605 AT3G55050.2 27.273 286 144 11 123 352 83 360 1.72e-15 77.8
MsaG045605 AT5G59220.2 34.000 150 85 3 124 259 148 297 3.69e-15 75.9
MsaG045605 AT1G72770.2 30.488 164 85 3 124 258 238 401 1.10e-13 72.4
MsaG045605 AT1G72770.5 30.488 164 85 3 124 258 238 401 1.10e-13 72.4
MsaG045605 AT5G19280.1 27.757 263 152 11 109 352 336 579 3.90e-13 71.2
MsaG045605 AT3G16560.1 28.977 176 96 6 162 310 247 420 6.40e-13 70.5
MsaG045605 AT3G16560.4 28.977 176 96 6 162 310 247 420 6.40e-13 70.5
MsaG045605 AT3G16560.2 28.977 176 96 6 162 310 247 420 6.40e-13 70.5
MsaG045605 AT3G16560.3 28.977 176 96 6 162 310 247 420 7.15e-13 70.1
MsaG045605 AT4G32950.2 28.571 231 125 9 93 300 50 263 7.54e-13 68.9
MsaG045605 AT5G26010.1 24.290 317 175 11 81 356 38 330 8.88e-13 69.3
MsaG045605 AT5G01700.1 27.313 227 115 8 124 310 29 245 4.58e-12 67.0
MsaG045605 AT5G01700.2 27.313 227 115 8 124 310 78 294 9.02e-12 66.6
MsaG045605 AT5G27930.3 30.088 226 105 11 118 300 86 301 2.94e-11 64.3
MsaG045605 AT1G79630.6 29.714 175 96 5 156 312 83 248 5.84e-11 63.9
MsaG045605 AT1G79630.3 29.714 175 96 5 156 312 83 248 5.84e-11 63.9
MsaG045605 AT1G79630.4 29.714 175 96 5 156 312 83 248 5.84e-11 63.9
MsaG045605 AT1G79630.5 29.714 175 96 5 156 312 83 248 5.84e-11 63.9
MsaG045605 AT1G79630.2 29.714 175 96 5 156 312 123 288 7.03e-11 63.9
MsaG045605 AT1G79630.7 29.714 175 96 5 156 312 123 288 7.03e-11 63.9

Find 88 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGACTGCAATTATATT+TGG 0.135131 8:+74990481 MsaT045605.1:CDS
GAGGACTTGGCAAAGAAATT+TGG 0.243759 8:+74990060 MsaT045605.1:CDS
ATTGAGTCTTCCCTGTCTTC+TGG 0.285045 8:+74990451 MsaT045605.1:CDS
TAATTGGAAGTGATGGAATA+TGG 0.292557 8:+74991096 MsaT045605.1:CDS
TAGATGGCATACACCATAAA+AGG 0.303590 8:-74990112 None:intergenic
ATCCTTTCTTTCATGCATAA+AGG 0.303955 8:-74990891 None:intergenic
ACACTAACAGGAAATGAATT+AGG 0.317080 8:-74989153 None:intergenic
TAGCAAAATCTACAGCGTTT+TGG 0.332140 8:-74991133 None:intergenic
GCATAAAGGCCTATGATCTT+TGG 0.333154 8:-74990877 None:intergenic
TAGCCAATGCCGGGGACTGC+AGG 0.348722 8:+74990817 MsaT045605.1:CDS
TGATCAAGATAATAATAATA+TGG 0.349493 8:+74989014 MsaT045605.1:CDS
CAATGTTGCAAGGAAATAAT+AGG 0.358586 8:+74991188 MsaT045605.1:CDS
TTGATAACAGAAGGATTTCA+TGG 0.366492 8:+74989043 MsaT045605.1:CDS
ATCAGAACCACCACCACCTT+TGG 0.374581 8:+74991268 MsaT045605.1:CDS
ATTGATGATGGTTACTTGAA+TGG 0.410247 8:+74990939 MsaT045605.1:CDS
ATGCTTCTCCTGACTCTGTT+AGG 0.416065 8:-74991302 None:intergenic
TTCGTCCCTACACTTCGGTC+GGG 0.430679 8:+74989982 MsaT045605.1:CDS
GAATAATCTATCTTTCTAAC+AGG 0.434832 8:-74991355 None:intergenic
ATGTGAGTATCTTCCATGTA+AGG 0.437191 8:-74990030 None:intergenic
TTCTATTACCCCTCCAGCTC+GGG 0.442074 8:-74990850 None:intergenic
TATTCTGTGCAGGTATTTGA+TGG 0.443156 8:+74990283 MsaT045605.1:intron
TCACATATGCATTGAGGACT+TGG 0.445711 8:+74990047 MsaT045605.1:CDS
ATGAATTAGGAGCACTGATC+TGG 0.445790 8:-74989140 None:intergenic
CTTTACTTGTAGCCAATGCC+GGG 0.446990 8:+74990808 MsaT045605.1:CDS
AAGGAAGTGAGTGGAAGAAA+TGG 0.449462 8:+74991011 MsaT045605.1:CDS
TCGTCCCTACACTTCGGTCG+GGG 0.449528 8:+74989983 MsaT045605.1:CDS
CACCACCTTTGGTTGTTGAA+AGG 0.451444 8:+74991279 MsaT045605.1:CDS
AGTTCTGGCTCAGCACTTAG+TGG 0.454686 8:-74991035 None:intergenic
AGCCCTGCAGTCCCCGGCAT+TGG 0.455154 8:-74990820 None:intergenic
TATTGGAGGTCGCCCTTACA+TGG 0.456928 8:+74990017 MsaT045605.1:CDS
TCTTTACTTGTAGCCAATGC+CGG 0.457915 8:+74990807 MsaT045605.1:CDS
TGACGCGGGCTCTAGGCAAC+TGG 0.460183 8:+74990973 MsaT045605.1:CDS
TTGAAAGGCCTAACAGAGTC+AGG 0.464128 8:+74991294 MsaT045605.1:CDS
CTAGGCGTGACGCGGGCTCT+AGG 0.464525 8:+74990966 MsaT045605.1:CDS
AATGTCATCAATTTAAGTTC+TGG 0.464919 8:-74991050 None:intergenic
CTTGGCGGATTTATTGATGA+TGG 0.469287 8:+74990927 MsaT045605.1:CDS
TAGAATTGTCCAAAGATCAT+AGG 0.470481 8:+74990868 MsaT045605.1:CDS
CTAGGCAACTGGCATCTTGA+AGG 0.481839 8:+74990984 MsaT045605.1:CDS
GGCCTTTATGCATGAAAGAA+AGG 0.485159 8:+74990889 MsaT045605.1:CDS
CAAAACAGCCCTGCAGTCCC+CGG 0.507129 8:-74990826 None:intergenic
GTGTAGGGACGAAATTCATC+AGG 0.507331 8:-74989972 None:intergenic
TTTCGTCCCTACACTTCGGT+CGG 0.513079 8:+74989981 MsaT045605.1:CDS
AAGCAGTTGTACCAGAAGAC+AGG 0.513476 8:-74990462 None:intergenic
CTGGCATCTTGAAGGAATGA+AGG 0.515181 8:+74990992 MsaT045605.1:CDS
TCAACAACCAAAGGTGGTGG+TGG 0.531756 8:-74991275 None:intergenic
AATTGGAAGTGATGGAATAT+GGG 0.533968 8:+74991097 MsaT045605.1:CDS
AGGAGCACTGATCTGGTCAC+TGG 0.548106 8:-74989133 None:intergenic
AGCCAATGCCGGGGACTGCA+GGG 0.552576 8:+74990818 MsaT045605.1:CDS
AGATAATTTAACTGTTGTGA+TGG 0.557874 8:+74991235 MsaT045605.1:CDS
TTGTTCGCGATCATCTGCCG+AGG 0.564331 8:+74990332 MsaT045605.1:CDS
TGGAGAAACTTGATAACAGA+AGG 0.570639 8:+74989034 MsaT045605.1:CDS
TATGCATGAAAGAAAGGATG+AGG 0.570968 8:+74990895 MsaT045605.1:CDS
ATTCTATTACCCCTCCAGCT+CGG 0.573089 8:-74990851 None:intergenic
CTTCCCTCTTGAACTCGAGA+AGG 0.574740 8:+74990375 MsaT045605.1:CDS
ATGAGGATCGAGTCTCTTGG+CGG 0.579884 8:+74990912 MsaT045605.1:CDS
CGTCCCTACACTTCGGTCGG+GGG 0.582208 8:+74989984 MsaT045605.1:CDS
GTGCAGGTATTTGATGGACA+TGG 0.586679 8:+74990289 MsaT045605.1:intron
TGACTGCAATTATATTTGGA+CGG 0.586908 8:+74990485 MsaT045605.1:CDS
TTAGGCCTTTCAACAACCAA+AGG 0.587308 8:-74991284 None:intergenic
ACCACCTTCTCGAGTTCAAG+AGG 0.589310 8:-74990379 None:intergenic
AGGATGAGGATCGAGTCTCT+TGG 0.591958 8:+74990909 MsaT045605.1:CDS
AACTCGAGAAGGTGGTCACA+AGG 0.594388 8:+74990386 MsaT045605.1:CDS
CTTTCAACAACCAAAGGTGG+TGG 0.598090 8:-74991278 None:intergenic
TGAATTTCGTCCCTACACTT+CGG 0.599296 8:+74989977 MsaT045605.1:CDS
TGTGAGTATCTTCCATGTAA+GGG 0.599872 8:-74990029 None:intergenic
CAGGAGAAGCATATCTGCTG+AGG 0.600005 8:+74991313 MsaT045605.1:CDS
GGTTACTTGAATGGACAACT+AGG 0.600765 8:+74990948 MsaT045605.1:CDS
CCCTCTTGAACTCGAGAAGG+TGG 0.601383 8:+74990378 MsaT045605.1:CDS
AGCAGTTGTACCAGAAGACA+GGG 0.602803 8:-74990461 None:intergenic
TGCAAAAGATCACAATGCAA+TGG 0.604015 8:-74989066 None:intergenic
GCATCCTCAACAATCACCCT+CGG 0.609381 8:-74990349 None:intergenic
TGGACAACTAGGCGTGACGC+GGG 0.612422 8:+74990959 MsaT045605.1:CDS
GGCCTTTCAACAACCAAAGG+TGG 0.612573 8:-74991281 None:intergenic
GAAGGAATGAAGGAAGTGAG+TGG 0.614412 8:+74991002 MsaT045605.1:CDS
TTAGCTGGAAAGCATTTGTG+AGG 0.615709 8:+74989921 MsaT045605.1:intron
AGGAGAAGCATATCTGCTGA+GGG 0.620558 8:+74991314 MsaT045605.1:CDS
GGGGAGTGGTCTGATATTGG+AGG 0.624136 8:+74990003 MsaT045605.1:CDS
TGTTCGCGATCATCTGCCGA+GGG 0.626852 8:+74990333 MsaT045605.1:CDS
ATGGACAACTAGGCGTGACG+CGG 0.641869 8:+74990958 MsaT045605.1:CDS
AGATACTCACATATGCATTG+AGG 0.642485 8:+74990041 MsaT045605.1:CDS
GTCAACATGTGTGTGCAAGA+AGG 0.652909 8:+74988982 None:intergenic
TGATGTGAAACAATGTTGCA+AGG 0.658172 8:+74991178 MsaT045605.1:CDS
CCACCTTCTCGAGTTCAAGA+GGG 0.662371 8:-74990378 None:intergenic
TTTACTTGTAGCCAATGCCG+GGG 0.668453 8:+74990809 MsaT045605.1:CDS
AGGTATTTGATGGACATGGA+GGG 0.676243 8:+74990293 MsaT045605.1:intron
TCTGCCGAGGGTGATTGTTG+AGG 0.686396 8:+74990345 MsaT045605.1:CDS
CAGGTATTTGATGGACATGG+AGG 0.705749 8:+74990292 MsaT045605.1:intron
ATAGGCGAAGCAATAAAGCG+AGG 0.718434 8:+74991206 MsaT045605.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 74988988 74991370 74988988 ID=MsaG045605
Chr8 mRNA 74988988 74991370 74988988 ID=MsaT045605.1;Parent=MsaG045605
Chr8 exon 74988988 74989167 74988988 ID=MsaT045605.1.exon1;Parent=MsaT045605.1
Chr8 CDS 74988988 74989167 74988988 ID=cds.MsaT045605.1;Parent=MsaT045605.1
Chr8 exon 74989925 74990122 74989925 ID=MsaT045605.1.exon2;Parent=MsaT045605.1
Chr8 CDS 74989925 74990122 74989925 ID=cds.MsaT045605.1;Parent=MsaT045605.1
Chr8 exon 74990295 74990506 74990295 ID=MsaT045605.1.exon3;Parent=MsaT045605.1
Chr8 CDS 74990295 74990506 74990295 ID=cds.MsaT045605.1;Parent=MsaT045605.1
Chr8 exon 74990806 74991370 74990806 ID=MsaT045605.1.exon4;Parent=MsaT045605.1
Chr8 CDS 74990806 74991370 74990806 ID=cds.MsaT045605.1;Parent=MsaT045605.1
Gene Sequence

>MsaT045605.1

ATGTGTGTGCAAGAAGGTGAACAAGTTGATCAAGATAATAATAATATGGAGAAACTTGATAACAGAAGGATTTCATGGCCATTGCATTGTGATCTTTTGCATGCTCAAATGGATAAATCAGAAAGAGACTCTTCTATTAGAATTTCCAGTGACCAGATCAGTGCTCCTAATTCATTTCCTCTGGAAAGCATTTGTGAGGATGCAGTGATTGCTGATAAAAAACAGAACCTGATGAATTTCGTCCCTACACTTCGGTCGGGGGAGTGGTCTGATATTGGAGGTCGCCCTTACATGGAAGATACTCACATATGCATTGAGGACTTGGCAAAGAAATTTGGTTACGATGTTGTCTGCAACGAAGCTATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCGCAATTTGTTCGCGATCATCTGCCGAGGGTGATTGTTGAGGATGCTGACTTCCCTCTTGAACTCGAGAAGGTGGTCACAAGGTCATTTTTGGAGACTGATTCAGAGTTTGCAAAAACATGCTCTATTGAGTCTTCCCTGTCTTCTGGTACAACTGCTTTGACTGCAATTATATTTGGACGGTCTTTACTTGTAGCCAATGCCGGGGACTGCAGGGCTGTTTTGTCCCGAGCTGGAGGGGTAATAGAATTGTCCAAAGATCATAGGCCTTTATGCATGAAAGAAAGGATGAGGATCGAGTCTCTTGGCGGATTTATTGATGATGGTTACTTGAATGGACAACTAGGCGTGACGCGGGCTCTAGGCAACTGGCATCTTGAAGGAATGAAGGAAGTGAGTGGAAGAAATGGACCACTAAGTGCTGAGCCAGAACTTAAATTGATGACATTGACAAAAGACGACGAGTTTTTGATAATTGGAAGTGATGGAATATGGGATGTTTTTCGTAGCCAAAACGCTGTAGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGTGAAACAATGTTGCAAGGAAATAATAGGCGAAGCAATAAAGCGAGGAGCAACAGATAATTTAACTGTTGTGATGGTATGTTTTCAATCAGAACCACCACCACCTTTGGTTGTTGAAAGGCCTAACAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATACCTGTTAGAAAGATAG

Protein sequence

>MsaT045605.1

MCVQEGEQVDQDNNNMEKLDNRRISWPLHCDLLHAQMDKSERDSSIRISSDQISAPNSFPLESICEDAVIADKKQNLMNFVPTLRSGEWSDIGGRPYMEDTHICIEDLAKKFGYDVVCNEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLETDSEFAKTCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRAGGVIELSKDHRPLCMKERMRIESLGGFIDDGYLNGQLGVTRALGNWHLEGMKEVSGRNGPLSAEPELKLMTLTKDDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKRGATDNLTVVMVCFQSEPPPPLVVERPNRVRRSISAEGLQNLKYLLER*